Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0194911 Rosa chinensis HOM05D000354 ORTHO05D000181 4.6e-61 237.7 116 100.0
FvH4_5g04531 Fragaria vesca HOM05D000354 ORTHO05D000181 2.5e-51 205.3 116 84.5
FAN18G3208 Fragaria x ananassa HOM05D000354 ORTHO05D000717 1.3e-50 203.0 112 86.6
FAN04G3100 Fragaria x ananassa HOM05D000354 ORTHO05D000181 4.8e-50 201.1 112 84.8
FAN08G2372 Fragaria x ananassa HOM05D000354 ORTHO05D000717 8.2e-50 200.3 111 86.5
Prupe.5G119200 Prunus persica HOM05D000354 ORTHO05D000181 3.5e-16 88.6 126 41.3
Prupe.5G119400 Prunus persica HOM05D000354 ORTHO05D000181 1.0e-15 87.0 124 41.1
Actinidia22157 Actinidia chinensis HOM05D000275 ORTHO05D000181 8.5e-15 84.0 118 38.1
MD06G1106500 Malus domestica HOM05D009669 ORTHO05D000181 1.9e-14 82.8 122 39.3
TAR636G0501 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.1e-13 79.3 114 39.5
Prupe.5G118600 Prunus persica HOM05D000275 ORTHO05D000181 4.7e-13 78.2 118 40.7
Sc01g0002760 Simmondsia chinensis HOM05D000275 ORTHO05D000181 4.0e-12 75.1 112 35.7
GSVIVG01027088001 Vitis vinifera HOM05D009669 ORTHO05D000181 4.4e-11 71.6 107 33.6
CiPaw.02G040200 Carya illinoinensis HOM05D000275 ORTHO05D000181 5.7e-11 71.2 105 39.0
Actinidia22158 Actinidia chinensis HOM05D000275 ORTHO05D000181 7.5e-11 70.9 98 35.7
Ah.05g179640 Amaranthus hybridus HOM05D000275 ORTHO05D000181 7.5e-11 70.9 102 34.3
Medtr1g040330 Medicago truncatula HOM05D000275 ORTHO05D000181 2.8e-10 68.9 110 38.2
Ah.05g179650 Amaranthus hybridus HOM05D000275 ORTHO05D000181 6.3e-10 67.8 100 33.0
Os11g0115100 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 6.3e-10 67.8 112 34.8
Os12g0114800 Oryza sativa ssp. japonica HOM05D000275 ORTHO05D000181 6.3e-10 67.8 112 34.8
Peaxi162Scf00786g00431 Petunia axillaris HOM05D000275 ORTHO05D000181 8.3e-10 67.4 117 30.8
MSTRG.4810 Avicennia marina HOM05D009669 ORTHO05D000181 1.1e-09 67.0 119 33.6
Zm00001eb383600 Zea mays HOM05D000275 ORTHO05D000181 1.1e-09 67.0 111 34.2
Actinidia08273 Actinidia chinensis HOM05D000275 ORTHO05D000181 1.4e-09 66.6 109 37.6
CANSAT56G2214 Cannabis sativa HOM05D000275 ORTHO05D000181 1.8e-09 66.2 112 34.8
Psat3g118200 Pisum sativum HOM05D000275 ORTHO05D000181 2.4e-09 65.9 99 40.4
FvH4_7g16320 Fragaria vesca HOM05D000275 ORTHO05D000181 3.1e-09 65.5 115 33.9
FAN06G2922 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.1e-09 65.5 115 33.9
FAN06G3596 Fragaria x ananassa HOM05D000275 ORTHO05D000181 3.1e-09 65.5 115 33.9
Medtr7g072993 Medicago truncatula HOM05D000275 ORTHO05D000181 3.1e-09 65.5 110 36.4
CANSAT56G1709 Cannabis sativa HOM05D000275 ORTHO05D000181 5.4e-09 64.7 96 37.5
SalBow3G1637 Salvia bowleyana HOM05D009669 ORTHO05D000181 7.0e-09 64.3 105 33.3
CAN.G986.13 Capsicum annuum HOM05D000275 ORTHO05D000181 1.2e-08 63.5 110 30.0
Solyc01g081600.3 Solanum lycopersicum HOM05D000275 ORTHO05D000181 1.6e-08 63.2 107 31.8
Sopen01g033150 Solanum pennellii HOM05D000275 ORTHO05D000181 1.6e-08 63.2 107 31.8
Thecc.01G343500 Theobroma cacao HOM05D000275 ORTHO05D000181 1.6e-08 63.2 111 31.5
MD01G1079700 Malus domestica HOM05D000275 ORTHO05D000181 2.0e-08 62.8 108 34.3
TAR374G1222 Trochodendron aralioides HOM05D000275 ORTHO05D000181 2.0e-08 62.8 112 34.8
Prupe.2G187100 Prunus persica HOM05D000275 ORTHO05D000181 2.7e-08 62.4 114 32.5
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 3.5e-08 62.0 102 35.3
Haze_25363 Corylus avellana HOM05D033107 ORTHO05D000181 4.5e-08 61.6 118 34.7
Sabra14G0071800 Salix brachista HOM05D009669 ORTHO05D000181 4.5e-08 61.6 109 32.1
EL10Ac9g21666 Beta vulgaris HOM05D000275 ORTHO05D000181 5.9e-08 61.2 99 36.4
CiPaw.12G083200 Carya illinoinensis HOM05D033107 ORTHO05D000181 7.7e-08 60.8 118 31.4
AUR62006385 Chenopodium quinoa HOM05D000275 ORTHO05D000181 7.7e-08 60.8 108 35.2
Sabra09G0016700 Salix brachista HOM05D000275 ORTHO05D000181 7.7e-08 60.8 113 38.1
Psat7g228160 Pisum sativum HOM05D000275 ORTHO05D000181 1.0e-07 60.5 108 34.3
RcHm_v2.0_Chr1g0359331 Rosa chinensis HOM05D000275 ORTHO05D000181 1.0e-07 60.5 117 33.3
MBI04_g37006_MAGBIO Magnolia biondii HOM05D000275 ORTHO05D000181 1.3e-07 60.1 119 34.5
AUR62029724 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.7e-07 59.7 108 34.3
AUR62029726 Chenopodium quinoa HOM05D000275 ORTHO05D000181 1.7e-07 59.7 112 30.4
arahy.Tifrunner.gnm1.ann1.5IM6J0 Arachis hypogaea HOM05D000275 ORTHO05D000181 2.3e-07 59.3 115 35.7
FAN01G1361 Fragaria x ananassa HOM05D009669 ORTHO05D000181 2.9e-07 58.9 115 31.3
FAN03G3319 Fragaria x ananassa HOM05D000275 ORTHO05D000181 2.9e-07 58.9 110 33.6
MD07G1148600 Malus domestica HOM05D000275 ORTHO05D000181 3.8e-07 58.5 114 32.5
Medtr7g072900 Medicago truncatula HOM05D000275 ORTHO05D000181 5.0e-07 58.2 110 34.5
PSO832G3328 Papaver somniferum HOM05D000275 ORTHO05D003378 5.0e-07 58.2 112 32.1
Prupe.2G000900 Prunus persica HOM05D000275 ORTHO05D000181 5.0e-07 58.2 114 32.5
SEGI_33977 Sequoiadendron giganteum HOM05D000275 ORTHO05D000181 5.0e-07 58.2 75 38.7
ATR0765G001 Amborella trichopoda HOM05D000275 ORTHO05D000181 6.6e-07 57.8 117 36.8
SGA_v2.0_scaffold153G36907 Striga asiatica HOM05D000275 ORTHO05D000181 6.6e-07 57.8 117 30.8
Gohir.A07G138100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 8.6e-07 57.4 115 31.3
Gorai.001G155200 Gossypium raimondii HOM05D000275 ORTHO05D000181 8.6e-07 57.4 115 31.3
Medtr4g027800 Medicago truncatula HOM05D000275 ORTHO05D000181 8.6e-07 57.4 112 33.0
Nitab4.5_0001821g0020 Nicotiana tabacum HOM05D000275 ORTHO05D003378 8.6e-07 57.4 115 30.4
Nitab4.5_0010416g0010 Nicotiana tabacum HOM05D000275 ORTHO05D003378 8.6e-07 57.4 93 33.3
PGSC0003DMG400000218 Solanum tuberosum HOM05D009669 ORTHO05D000181 8.6e-07 57.4 111 31.5
Medtr4g027840 Medicago truncatula HOM05D000275 ORTHO05D000181 1.1e-06 57.0 112 32.1
HanXRQChr01g0000161 Helianthus annuus HOM05D000275 ORTHO05D000181 1.9e-06 56.2 112 33.9
Cpa.g.sc96.4 Carica papaya HOM05D002290 ORTHO05D002532 2.5e-06 55.8 111 34.2
Ca_07200_v3 Cicer arietinum L. HOM05D000275 ORTHO05D000181 2.5e-06 55.8 112 29.5
Oeu057988.1 Olea europaea HOM05D000275 ORTHO05D000181 2.5e-06 55.8 112 31.2
RcHm_v2.0_Chr2g0127591 Rosa chinensis HOM05D007676 ORTHO05D009456 2.5e-06 55.8 119 31.9
CAN.G1473.25 Capsicum annuum HOM05D000275 ORTHO05D000181 3.3e-06 55.5 116 35.3
Glyma.03G257200 Glycine max HOM05D000275 ORTHO05D000181 3.3e-06 55.5 112 27.7
Lj3g0010875 Lotus japonicus HOM05D000275 ORTHO05D000181 3.3e-06 55.5 113 32.7
Gohir.D07G143100 Gossypium hirsutum HOM05D000275 ORTHO05D000181 4.2e-06 55.1 115 30.4
Nitab4.5_0003696g0070 Nicotiana tabacum HOM05D000275 ORTHO05D000181 4.2e-06 55.1 116 32.8
Psat0s6176g0040 Pisum sativum HOM05D000275 ORTHO05D000181 4.2e-06 55.1 113 34.5
Psat3g120240 Pisum sativum HOM05D000275 ORTHO05D000181 4.2e-06 55.1 114 34.2
Migut.N01745 Erythranthe guttata HOM05D000275 ORTHO05D000181 9.5e-06 53.9 115 32.2


User provided reference genes

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