Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0193891 Rosa chinensis HOM05D007596 ORTHO05D009672 1.5e-155 552.7 264 100.0
FAN13G0067 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.0e-140 503.4 264 89.4
FAN08G2413 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.1e-139 500.0 264 88.6
FAN18G0106 Fragaria x ananassa HOM05D007596 ORTHO05D009672 5.6e-139 497.7 264 88.6
FvH4_5g05110 Fragaria vesca HOM05D007596 ORTHO05D009672 7.4e-139 497.3 264 88.3
FAN18G0038 Fragaria x ananassa HOM05D007596 ORTHO05D009672 6.7e-132 474.2 256 87.1
CiPaw.11G029100 Carya illinoinensis HOM05D007596 ORTHO05D009672 6.9e-113 411.0 264 73.5
MD06G1177600 Malus domestica HOM05D007596 ORTHO05D009672 4.5e-112 408.3 262 74.4
Potri.012G078600 Populus trichocarpa HOM05D007596 ORTHO05D009672 8.5e-111 404.1 262 71.0
CANSAT80G2510 Cannabis sativa HOM05D007596 ORTHO05D009672 3.0e-108 395.6 262 71.4
TWI15G1048 Tripterygium wilfordii HOM05D007596 ORTHO05D009672 3.0e-108 395.6 262 73.7
Lj4g0018893 Lotus japonicus HOM05D007596 ORTHO05D009672 1.5e-107 393.3 262 68.3
GSVIVG01007788001 Vitis vinifera HOM05D007596 ORTHO05D009672 4.4e-107 391.7 256 70.3
Thecc.03G008700 Theobroma cacao HOM05D007596 ORTHO05D009672 2.2e-106 389.4 252 74.6
Manes.06G103100 Manihot esculenta HOM05D007596 ORTHO05D009672 6.3e-106 387.9 262 69.8
Ciclev10021737m.g Citrus clementina HOM05D007596 ORTHO05D009672 3.1e-105 385.6 262 70.2
Duzib205G0154 Durio zibethinus HOM05D007596 ORTHO05D009672 4.1e-105 385.2 252 73.0
Eucgr.K02859 Eucalyptus grandis HOM05D007596 ORTHO05D009672 5.3e-105 384.8 262 70.2
EL10Ac5g10784 Beta vulgaris HOM05D007596 ORTHO05D009672 2.0e-104 382.9 256 69.1
Rhsim12G0163300 Rhododendron simsii HOM05D007596 ORTHO05D009672 1.0e-103 380.6 258 67.8
PGR044G0668 Punica granatum HOM05D007596 ORTHO05D009672 1.7e-103 379.8 263 68.8
Sabra12G0056400 Salix brachista HOM05D007596 ORTHO05D009672 2.2e-103 379.4 304 61.5
ClCG01G013000 Citrullus lanatus HOM05D007596 ORTHO05D009672 5.0e-103 378.3 262 67.2
Nn4g22825 Nelumbo nucifera HOM05D007596 ORTHO05D009672 1.1e-102 377.1 257 67.7
CsaV3_1G008350 Cucumis sativus L. HOM05D007596 ORTHO05D009672 1.5e-102 376.7 262 66.4
vmacro16599 Vaccinium macrocarpon HOM05D007596 ORTHO05D009672 1.5e-102 376.7 258 67.8
Lj9A451T97 Lonicera japonica HOM05D007596 ORTHO05D009672 1.9e-102 376.3 254 69.3
CSS0015692 Camellia sinensis var. sinensis HOM05D007596 ORTHO05D009672 5.5e-102 374.8 258 68.2
Sed0010804 Sechium edule HOM05D007596 ORTHO05D009672 7.2e-102 374.4 262 66.0
TAR374G1438 Trochodendron aralioides HOM05D007596 ORTHO05D009672 4.7e-101 371.7 256 66.4
Glyma.05G036200 Glycine max HOM05D007596 ORTHO05D009672 8.0e-101 370.9 262 64.9
Atru.chr9.2439 Acer truncatum HOM05D007596 ORTHO05D009672 1.0e-100 370.5 264 68.9
Medtr4g106630 Medicago truncatula HOM05D007596 ORTHO05D009672 1.0e-100 370.5 265 64.9
Hma1.2p1_0701F.1_g205970 Hydrangea macrophylla HOM05D007596 ORTHO05D009672 2.3e-100 369.4 262 67.9
Oeu041561.1 Olea europaea HOM05D007596 ORTHO05D009672 5.2e-100 368.2 254 66.9
arahy.Tifrunner.gnm1.ann1.3E9X4W Arachis hypogaea HOM05D007596 ORTHO05D009672 6.7e-100 367.9 262 65.3
PSO063G6591 Papaver somniferum HOM05D007596 ORTHO05D009672 2.6e-99 365.9 254 66.9
Lalb_Chr13g0297881 Lupinus albus HOM05D007596 ORTHO05D009672 3.3e-99 365.5 254 66.9
arahy.Tifrunner.gnm1.ann1.8F9XT7 Arachis hypogaea HOM05D007596 ORTHO05D009672 4.4e-99 365.2 262 64.9
Gorai.006G187000 Gossypium raimondii HOM05D007596 ORTHO05D009672 5.7e-99 364.8 252 71.0
Psat4g056920 Pisum sativum HOM05D007596 ORTHO05D009672 7.5e-99 364.4 264 64.8
SGA_v2.0_scaffold90G27960 Striga asiatica HOM05D007596 ORTHO05D009672 7.5e-99 364.4 254 68.1
Gohir.A09G169500 Gossypium hirsutum HOM05D007596 ORTHO05D009672 9.7e-99 364.0 252 70.2
ECA232G2922 Erigeron canadensis HOM05D007596 ORTHO05D009672 1.7e-98 363.2 253 67.2
Phvul.003G198900 Phaseolus vulgaris HOM05D007596 ORTHO05D009672 1.1e-97 360.5 262 64.9
HanXRQChr16g0503661 Helianthus annuus HOM05D007596 ORTHO05D009672 2.4e-97 359.4 261 67.4
DCAR_026124 Daucus carota HOM05D007596 ORTHO05D009672 4.1e-97 358.6 252 66.3
Hund02735 Selenicereus undatus HOM05D007596 ORTHO05D009672 9.1e-97 357.5 262 66.4
Migut.I00032 Erythranthe guttata HOM05D007596 ORTHO05D009672 2.0e-96 356.3 252 67.9
Cc04_g12800 Coffea canephora HOM05D007596 ORTHO05D009672 5.9e-96 354.8 254 66.1
Nitab4.5_0000003g0490 Nicotiana tabacum HOM05D007596 ORTHO05D009672 2.2e-95 352.8 260 64.2
Aqoxy3G00967 Aquilegia oxysepala HOM05D007596 ORTHO05D009672 5.0e-95 351.7 254 64.6
Nitab4.5_0007803g0020 Nicotiana tabacum HOM05D007596 ORTHO05D009672 1.5e-94 350.1 260 63.8
PGSC0003DMG400027097 Solanum tuberosum HOM05D007596 ORTHO05D009672 2.5e-94 349.4 260 63.8
Sopen06g027660 Solanum pennellii HOM05D007596 ORTHO05D009672 3.2e-94 349.0 260 64.2
SalBow5G3112 Salvia bowleyana HOM05D007596 ORTHO05D009672 7.2e-94 347.8 254 64.6
MBI15_g31109_MAGBIO Magnolia biondii HOM05D007596 ORTHO05D009672 9.4e-94 347.4 256 62.9
Solyc06g071380.3 Solanum lycopersicum HOM05D007596 ORTHO05D009672 1.2e-93 347.1 260 64.2
MSTRG.11436 Avicennia marina HOM05D007596 ORTHO05D009672 6.1e-93 344.7 253 65.6
HPP92_019181 Vanilla planifolia HOM05D007596 ORTHO05D009672 6.1e-93 344.7 258 61.2
TPR.G37562 Trifolium pratense HOM05D007596 ORTHO05D009672 2.3e-92 342.8 263 61.6
Dinv20674 Davidia involucrata HOM05D007596 ORTHO05D009672 9.8e-91 337.4 222 72.5
COL.COLO4_34057 Corchorus olitorius HOM05D007596 ORTHO05D009672 2.8e-90 335.9 260 64.6
Psat4g101560 Pisum sativum HOM05D007596 ORTHO05D009672 8.3e-90 334.3 254 64.6
Cfa019092 Carpinus fangiana HOM05D007596 ORTHO05D009672 4.1e-89 332.0 219 74.9
PSO832G1789 Papaver somniferum HOM05D007596 ORTHO05D009672 2.5e-86 322.8 227 66.1
Gohir.D09G165200 Gossypium hirsutum HOM05D007596 ORTHO05D009672 1.2e-80 303.9 252 61.9
Prupe.5G176300 Prunus persica HOM05D007596 ORTHO05D009672 3.8e-79 298.9 179 78.2
VMungo1215G2651 Vigna mungo HOM05D007596 ORTHO05D009672 3.8e-79 298.9 262 56.9
ATR0691G114 Amborella trichopoda HOM05D007596 ORTHO05D009672 6.6e-79 298.1 222 60.8
Peaxi162Scf00689g00036 Petunia axillaris HOM05D007596 ORTHO05D009672 1.5e-78 297.0 260 57.7
Lsat_1_v5_gn_4_73100 Lactuca sativa HOM05D007596 ORTHO05D009672 4.3e-78 295.4 252 57.5
Os04g0465800 Oryza sativa ssp. japonica HOM05D007596 ORTHO05D009672 5.7e-75 285.0 229 59.8
Zm00001eb080350 Zea mays HOM05D007596 ORTHO05D009672 7.5e-75 284.6 226 61.1
Ca_21906_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 3.5e-64 249.2 208 60.1
Ca_21924_v3 Cicer arietinum L. HOM05D007596 ORTHO05D009672 3.5e-64 249.2 208 60.1
Sc04g0001910 Simmondsia chinensis HOM05D007596 ORTHO05D009672 7.8e-64 248.1 180 65.6
FAN04G0664 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.1e-54 217.6 118 86.4
QL10p012241 Quercus lobata HOM05D007596 ORTHO05D009672 1.5e-54 217.2 133 74.4
SMO347G0014 Selaginella moellendorffii HOM05D007596 ORTHO05D009672 3.6e-53 212.6 180 56.1
CiPaw.11G029000 Carya illinoinensis HOM05D007596 ORTHO05D009672 2.2e-50 203.4 131 72.5
unitig_26.g8797 Utricularia gibba HOM05D007596 ORTHO05D009672 4.9e-50 202.2 290 41.7
Ah.13g077910 Amaranthus hybridus HOM05D007596 ORTHO05D004562 5.4e-49 198.7 211 49.3
Haze_07490 Corylus avellana HOM05D007596 ORTHO05D009672 1.2e-48 197.6 132 73.5
Glyma.17G091200 Glycine max HOM05D007596 ORTHO05D009672 2.8e-45 186.4 201 47.8
SGA_v2.0_scaffold90G27962 Striga asiatica HOM05D007596 ORTHO05D009672 9.9e-43 177.9 162 54.3
CBR_g18641 Chara braunii HOM05D007596 ORTHO05D009672 1.7e-39 167.2 154 51.9
AUR62030990 Chenopodium quinoa HOM05D007596 ORTHO05D009672 1.8e-36 157.1 101 72.3
COL.COLO4_33480 Corchorus olitorius HOM05D007596 ORTHO05D009672 2.7e-32 143.3 103 64.1
FvH4_5g16630 Fragaria vesca HOM05D007596 ORTHO05D009672 6.0e-32 142.1 312 31.7
FAN18G2080 Fragaria x ananassa HOM05D007596 ORTHO05D009672 1.7e-31 140.6 312 31.7
Cpa.g.c40406 Carica papaya HOM05D007596 ORTHO05D009672 4.9e-26 122.5 104 56.7
Sc11g0005570 Simmondsia chinensis HOM05D007596 ORTHO05D009672 1.2e-16 91.3 53 69.8
SGA_v2.0_scaffold90G27974 Striga asiatica HOM05D001155 ORTHO05D001080 2.7e-16 90.1 93 49.5
Sc11g0005890 Simmondsia chinensis HOM05D007596 ORTHO05D009672 6.0e-16 89.0 53 67.9
SGA_v2.0_scaffold90G27967 Striga asiatica HOM05D007596 ORTHO05D009672 1.0e-15 88.2 75 57.3
EL10Ac4g09605 Beta vulgaris HOM05D004918 ORTHO05D005706 5.3e-12 75.9 65 58.5


User provided reference genes

Program Settings