Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0193391 Rosa chinensis HOM05D006234 ORTHO05D007813 3.8e-144 515.0 293 100.0
FAN04G0097 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.5e-124 449.9 294 87.8
FvH4_5g05440 Fragaria vesca HOM05D006234 ORTHO05D007813 2.9e-120 435.6 290 89.3
FAN18G0739 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.9e-120 435.6 290 89.3
FAN18G3270 Fragaria x ananassa HOM05D006234 ORTHO05D007813 2.5e-119 432.6 290 89.0
FAN08G0279 Fragaria x ananassa HOM05D006234 ORTHO05D007813 4.7e-118 428.3 307 78.8
MD14G1178600 Malus domestica HOM05D006234 ORTHO05D007813 1.8e-109 399.8 299 78.3
MD06G1172700 Malus domestica HOM05D006234 ORTHO05D007813 6.3e-107 391.3 294 77.2
COL.COLO4_30066 Corchorus olitorius HOM05D006234 ORTHO05D007813 1.0e-96 357.5 305 67.9
CANSAT80G1835 Cannabis sativa HOM05D006234 ORTHO05D007813 6.6e-96 354.8 298 74.5
Thecc.03G014200 Theobroma cacao HOM05D006234 ORTHO05D007813 4.2e-95 352.1 305 75.4
Gohir.A12G274800 Gossypium hirsutum HOM05D006234 ORTHO05D007813 1.2e-94 350.5 306 69.9
CSS0048541 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 2.8e-94 349.4 301 66.1
CSS0047520 Camellia sinensis var. sinensis HOM05D006234 ORTHO05D007813 3.6e-94 349.0 301 66.1
Gohir.D12G275500 Gossypium hirsutum HOM05D006234 ORTHO05D007813 3.6e-94 349.0 301 69.8
Gorai.008G296000 Gossypium raimondii HOM05D006234 ORTHO05D007813 3.6e-94 349.0 301 69.8
GSVIVG01007727001 Vitis vinifera HOM05D006234 ORTHO05D007813 2.0e-92 343.2 293 68.9
Haze_07514 Corylus avellana HOM05D006234 ORTHO05D007813 2.6e-92 342.8 293 76.5
Cfa019148 Carpinus fangiana HOM05D006234 ORTHO05D007813 3.4e-92 342.4 293 76.5
PGR044G0892 Punica granatum HOM05D006234 ORTHO05D007813 4.4e-92 342.0 295 68.1
FAN13G1809 Fragaria x ananassa HOM05D006234 ORTHO05D007813 1.7e-91 340.1 196 87.2
Lj9A446T64 Lonicera japonica HOM05D006234 ORTHO05D007813 2.8e-91 339.3 300 68.7
CiPaw.12G027800 Carya illinoinensis HOM05D006234 ORTHO05D007813 3.7e-91 339.0 294 72.1
Potri.012G082300 Populus trichocarpa HOM05D006234 ORTHO05D007813 3.7e-91 339.0 294 69.0
Sabra12G0058900 Salix brachista HOM05D006234 ORTHO05D007813 1.1e-90 337.4 290 72.1
MELO3C002271.2 Cucumis melo HOM05D006234 ORTHO05D007813 1.8e-90 336.7 288 72.9
CsaV3_1G008570 Cucumis sativus L. HOM05D006234 ORTHO05D007813 2.4e-90 336.3 288 72.9
Rhsim12G0165600 Rhododendron simsii HOM05D006234 ORTHO05D007813 5.4e-90 335.1 267 70.0
Potri.015G078100 Populus trichocarpa HOM05D006234 ORTHO05D007813 7.0e-90 334.7 294 72.1
Manes.14G064600 Manihot esculenta HOM05D006234 ORTHO05D007813 1.2e-89 334.0 254 77.6
Atru.chr9.2492 Acer truncatum HOM05D006234 ORTHO05D007813 3.5e-89 332.4 211 77.3
Hma1.2p1_0592F.1_g185420 Hydrangea macrophylla HOM05D006234 ORTHO05D007813 3.5e-89 332.4 267 68.5
QL10p010716 Quercus lobata HOM05D006234 ORTHO05D007813 1.0e-88 330.9 300 73.3
Sed0024030 Sechium edule HOM05D006234 ORTHO05D007813 1.0e-88 330.9 293 73.0
EL10Ac5g10733 Beta vulgaris HOM05D006234 ORTHO05D007813 6.6e-88 328.2 297 58.9
arahy.Tifrunner.gnm1.ann1.ZL3RZ2 Arachis hypogaea HOM05D006234 ORTHO05D007813 1.5e-87 327.0 271 69.7
Nitab4.5_0000025g0560 Nicotiana tabacum HOM05D006234 ORTHO05D007813 1.5e-87 327.0 293 66.6
Eucgr.K02833 Eucalyptus grandis HOM05D006234 ORTHO05D007813 3.3e-87 325.9 304 65.1
Sc10g0010120 Simmondsia chinensis HOM05D006234 ORTHO05D007813 5.6e-87 325.1 210 76.7
Glyma.17G088400 Glycine max HOM05D006234 ORTHO05D007813 9.5e-87 324.3 244 67.6
Glyma.05G038600 Glycine max HOM05D006234 ORTHO05D007813 1.6e-86 323.6 212 75.5
Nn4g22716 Nelumbo nucifera HOM05D006234 ORTHO05D007813 2.1e-86 323.2 289 66.1
arahy.Tifrunner.gnm1.ann1.I5PLYK Arachis hypogaea HOM05D006234 ORTHO05D007813 2.8e-86 322.8 271 69.4
QL10p011029 Quercus lobata HOM05D006234 ORTHO05D007813 2.8e-86 322.8 274 76.6
Ah.02g110560 Amaranthus hybridus HOM05D006234 ORTHO05D007813 3.6e-86 322.4 309 63.1
Lj4g0025683 Lotus japonicus HOM05D006234 ORTHO05D007813 8.0e-86 321.2 212 79.7
Cc04_g12080 Coffea canephora HOM05D006234 ORTHO05D007813 1.0e-85 320.9 311 63.0
vmacro16618 Vaccinium macrocarpon HOM05D006234 ORTHO05D007813 1.4e-85 320.5 321 58.9
Phvul.003G201500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 6.8e-85 318.2 212 82.1
Medtr4g105610 Medicago truncatula HOM05D006234 ORTHO05D007813 8.9e-85 317.8 212 75.0
Sopen12g011710 Solanum pennellii HOM05D006234 ORTHO05D007813 8.9e-85 317.8 215 73.5
TPR.G37565 Trifolium pratense HOM05D006234 ORTHO05D007813 1.5e-84 317.0 212 74.1
AUR62030948 Chenopodium quinoa HOM05D006234 ORTHO05D007813 2.0e-84 316.6 244 67.2
Ciclev10021475m.g Citrus clementina HOM05D006234 ORTHO05D007813 2.6e-84 316.2 265 66.0
Hund09446 Selenicereus undatus HOM05D006234 ORTHO05D007813 4.4e-84 315.5 308 62.3
Lsat_1_v5_gn_5_15020 Lactuca sativa HOM05D006234 ORTHO05D007813 5.8e-84 315.1 290 67.2
Oeu020907.1 Olea europaea HOM05D006234 ORTHO05D007813 5.8e-84 315.1 303 63.0
Nitab4.5_0001514g0060 Nicotiana tabacum HOM05D006234 ORTHO05D007813 2.2e-83 313.2 293 63.5
Sabra15G0102700 Salix brachista HOM05D006234 ORTHO05D007813 6.4e-83 311.6 316 61.7
Aqoxy3G02888 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 8.3e-83 311.2 247 72.9
ClCG01G013210 Citrullus lanatus HOM05D006234 ORTHO05D007813 1.1e-82 310.8 292 66.1
Peaxi162Scf00255g01121 Petunia axillaris HOM05D006234 ORTHO05D007813 1.1e-82 310.8 293 59.4
Lalb_Chr13g0297731 Lupinus albus HOM05D006234 ORTHO05D007813 4.1e-82 308.9 211 73.5
Migut.O00096 Erythranthe guttata HOM05D006234 ORTHO05D007813 7.0e-82 308.1 288 66.0
unitig_60.g25412 Utricularia gibba HOM05D006234 ORTHO05D007813 1.3e-80 303.9 209 78.9
PSO063G7211 Papaver somniferum HOM05D006234 ORTHO05D007813 5.0e-80 302.0 211 78.2
Hund02751 Selenicereus undatus HOM05D006234 ORTHO05D007813 5.0e-80 302.0 299 56.5
HanXRQChr05g0155761 Helianthus annuus HOM05D006234 ORTHO05D007813 6.6e-80 301.6 297 66.3
PGSC0003DMG401026661 Solanum tuberosum HOM05D006234 ORTHO05D007813 6.6e-80 301.6 249 67.5
PSO832G4587 Papaver somniferum HOM05D006234 ORTHO05D007813 1.5e-79 300.4 211 77.7
MSTRG.9679 Avicennia marina HOM05D006234 ORTHO05D007813 1.9e-79 300.1 288 65.3
Zm00001eb345780 Zea mays HOM05D006234 ORTHO05D007813 2.5e-79 299.7 212 69.3
SGA_v2.0_scaffold90G27902 Striga asiatica HOM05D006234 ORTHO05D007813 5.6e-79 298.5 288 59.4
SalBow5G5218 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.1e-78 296.6 211 70.6
THA.LOC104809262 Tarenaya hassleriana HOM05D006234 ORTHO05D007813 2.8e-78 296.2 240 63.8
Duzib205G1984 Durio zibethinus HOM05D006234 ORTHO05D007813 2.6e-76 289.7 298 58.4
Lj1g0005957 Lotus japonicus HOM05D006234 ORTHO05D007813 4.4e-76 288.9 267 65.2
SalBow6G2400 Salvia bowleyana HOM05D006234 ORTHO05D007813 4.4e-76 288.9 289 62.3
HPP92_001303 Vanilla planifolia HOM05D006234 ORTHO05D007813 2.9e-75 286.2 211 65.9
Glyma.04G184400 Glycine max HOM05D006234 ORTHO05D007813 1.4e-74 283.9 237 67.9
TAR629G2947 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.4e-74 283.9 199 80.4
SGA_v2.0_scaffold114G31825 Striga asiatica HOM05D006234 ORTHO05D007813 5.4e-74 282.0 210 68.1
VMungo1309G2926 Vigna mungo HOM05D006234 ORTHO05D007813 5.4e-74 282.0 248 58.1
ECA246G1070 Erigeron canadensis HOM05D006234 ORTHO05D007813 9.2e-74 281.2 210 75.2
Manes.06G106000 Manihot esculenta HOM05D006234 ORTHO05D007813 2.7e-73 279.6 260 70.0
Os05g0170800 Oryza sativa ssp. japonica HOM05D006234 ORTHO05D007813 2.7e-73 279.6 212 69.8
VMungo1215G2331 Vigna mungo HOM05D006234 ORTHO05D007813 4.6e-73 278.9 215 68.4
MBI10_g27998_MAGBIO Magnolia biondii HOM05D006234 ORTHO05D007813 1.7e-72 276.9 259 60.2
TAR622G1324 Trochodendron aralioides HOM05D006234 ORTHO05D007813 1.7e-72 276.9 179 88.3
SalBow6G3516 Salvia bowleyana HOM05D006234 ORTHO05D007813 3.9e-72 275.8 186 73.7
AUR62008196 Chenopodium quinoa HOM05D006234 ORTHO05D007813 5.1e-72 275.4 244 61.9
Glyma.06G181500 Glycine max HOM05D006234 ORTHO05D007813 5.1e-72 275.4 267 60.7
arahy.Tifrunner.gnm1.ann1.HN9NVD Arachis hypogaea HOM05D006234 ORTHO05D007813 7.3e-71 271.6 247 57.5
Prupe.5G172000 Prunus persica HOM05D006234 ORTHO05D007813 8.1e-70 268.1 227 75.3
SEGI_35494 Sequoiadendron giganteum HOM05D006234 ORTHO05D007813 4.0e-69 265.8 212 62.3
Phvul.009G177500 Phaseolus vulgaris HOM05D006234 ORTHO05D007813 1.5e-68 263.8 255 55.3
Zm00001eb124590 Zea mays HOM05D006234 ORTHO05D007813 1.3e-67 260.8 214 63.6
CAN.G263.4 Capsicum annuum HOM05D006234 ORTHO05D007813 1.7e-67 260.4 213 64.8
Cpa.g.sc685.2 Carica papaya HOM05D006234 ORTHO05D007813 8.3e-67 258.1 142 83.8
Dinv38575 Davidia involucrata HOM05D006234 ORTHO05D007813 5.4e-66 255.4 235 68.5
Nn3g16823 Nelumbo nucifera HOM05D006234 ORTHO05D007813 7.1e-66 255.0 313 49.5
CDE04G1656 Ceratophyllum demersum HOM05D006234 ORTHO05D007813 2.7e-65 253.1 250 60.0
HanXRQChr05g0132691 Helianthus annuus HOM05D006234 ORTHO05D007813 1.5e-63 247.3 215 60.9
arahy.Tifrunner.gnm1.ann1.68I129 Arachis hypogaea HOM05D006234 ORTHO05D007813 2.5e-63 246.5 211 61.6
Actinidia19103 Actinidia chinensis HOM05D006234 ORTHO05D007813 3.6e-54 216.1 137 75.9
Pp3c21_1540 Physcomitrium patens HOM05D006234 ORTHO05D007813 1.9e-47 193.7 202 57.9
SalBow1G2571 Salvia bowleyana HOM05D006234 ORTHO05D007813 5.1e-40 169.1 153 58.8
Aqoxy6G01962 Aquilegia oxysepala HOM05D006234 ORTHO05D007813 1.4e-37 161.0 134 63.4
MCO05G167 Micromonas commoda HOM05D006234 ORTHO05D007813 5.7e-31 139.0 176 43.2
DCAR_026145 Daucus carota HOM05D007767 ORTHO05D010057 1.3e-27 127.9 174 59.2
Cre16.g650500 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 6.5e-27 125.6 204 44.1
Lalb_Chr08g0236591 Lupinus albus HOM05D006234 ORTHO05D007813 6.3e-22 109.0 65 76.9
Ca_21933_v3 Cicer arietinum L. HOM05D000957 ORTHO05D000754 1.4e-21 107.8 89 68.5
SalBow8G5646 Salvia bowleyana HOM05D006234 ORTHO05D007813 2.4e-21 107.1 179 38.5
Psat5g000720 Pisum sativum HOM05D006234 ORTHO05D007813 4.1e-21 106.3 89 67.4
Actinidia19102 Actinidia chinensis HOM05D006234 ORTHO05D007813 2.0e-20 104.0 127 48.8
Solyc12g021360.3 Solanum lycopersicum HOM05D006234 ORTHO05D007813 2.0e-20 104.0 104 57.7
ATR1091G013 Amborella trichopoda HOM05D006234 ORTHO05D007813 6.1e-17 92.4 130 43.8
Cre09.g387134 Chlamydomonas reinhardtii HOM05D006234 ORTHO05D007813 1.0e-16 91.7 131 35.9
SalBow1G3204 Salvia bowleyana HOM05D006234 ORTHO05D007813 1.4e-16 91.3 74 60.8
PRCOL_00003688 Prasinoderma coloniale HOM05D001043 ORTHO05D006432 7.4e-15 85.5 107 41.1
arahy.Tifrunner.gnm1.ann1.AH97YV Arachis hypogaea HOM05D006234 ORTHO05D007813 1.8e-13 80.9 55 69.1
Lalb_Chr08g0236581 Lupinus albus HOM05D006234 ORTHO05D007813 1.9e-10 70.9 52 73.1
Cpa.g.sc685.1 Carica papaya HOM05D006234 ORTHO05D007813 7.2e-10 68.9 109 43.1
RcHm_v2.0_Chr6g0279701 Rosa chinensis HOM05D006234 ORTHO05D007813 7.2e-10 68.9 53 73.6
Manes.11G123700 Manihot esculenta HOM05D001043 ORTHO05D006432 4.7e-09 66.2 138 34.1
CSS0043871 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 1.0e-08 65.1 150 34.0
PSO832G3319 Papaver somniferum HOM05D001043 ORTHO05D006432 1.1e-07 61.6 147 31.3
PSO210G3503 Papaver somniferum HOM05D001043 ORTHO05D006432 1.5e-07 61.2 147 31.3
CSS0016711 Camellia sinensis var. sinensis HOM05D001043 ORTHO05D006432 2.6e-07 60.5 123 35.0
ECA240G3866 Erigeron canadensis HOM05D001043 ORTHO05D006432 2.6e-07 60.5 138 30.4
Potri.017G027000 Populus trichocarpa HOM05D001043 ORTHO05D006432 5.7e-07 59.3 110 32.7
Glyma.12G051100 Glycine max HOM05D001043 ORTHO05D006432 1.3e-06 58.2 112 35.7
AUR62023842 Chenopodium quinoa HOM05D001043 ORTHO05D006432 1.7e-06 57.8 134 28.4
Sabra07G0106300 Salix brachista HOM05D001043 ORTHO05D006432 1.7e-06 57.8 112 31.2
Atru.chr4.1261 Acer truncatum HOM05D001043 ORTHO05D006432 2.8e-06 57.0 116 33.6
HanXRQChr03g0092911 Helianthus annuus HOM05D001043 ORTHO05D006432 4.8e-06 56.2 137 31.4
Potri.007G130900 Populus trichocarpa HOM05D001043 ORTHO05D006432 6.3e-06 55.8 112 32.1
SalBow3G0890 Salvia bowleyana HOM05D001251 ORTHO05D007813 6.3e-06 55.8 30 80.0
PGR142G3303 Punica granatum HOM05D001043 ORTHO05D006432 8.2e-06 55.5 136 31.6
Hund12412 Selenicereus undatus HOM05D001043 ORTHO05D006432 8.2e-06 55.5 136 27.9


User provided reference genes

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