Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0193371 Rosa chinensis HOM05D000922 ORTHO05D007418 0.0e+00 2146.7 1122 100.0
FAN18G1332 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1811.2 1130 81.7
FvH4_5g05470 Fragaria vesca HOM05D000922 ORTHO05D007418 0.0e+00 1805.0 1130 81.6
FAN13G2825 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1792.7 1177 82.4
FAN08G1289 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1766.9 1130 81.6
FAN18G2587 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1762.3 1208 76.2
FAN04G3074 Fragaria x ananassa HOM05D000922 ORTHO05D007418 0.0e+00 1577.4 965 83.9
Prupe.5G171800 Prunus persica HOM05D000922 ORTHO05D007418 0.0e+00 1485.7 1159 73.0
MD06G1172500 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1474.9 1139 68.8
MD14G1178400 Malus domestica HOM05D000922 ORTHO05D007418 0.0e+00 1439.5 1137 71.3
Cfa019149 Carpinus fangiana HOM05D000922 ORTHO05D007418 0.0e+00 1119.8 1156 59.3
Haze_07516 Corylus avellana HOM05D000922 ORTHO05D007418 0.0e+00 1094.3 1190 57.1
CANSAT80G2096 Cannabis sativa HOM05D000922 ORTHO05D007418 0.0e+00 1083.2 1151 54.6
QL10p011002 Quercus lobata HOM05D000922 ORTHO05D007418 4.6e-307 1058.1 1129 58.5
CiPaw.11G024700 Carya illinoinensis HOM05D000922 ORTHO05D007418 5.6e-305 1051.2 1165 54.8
GSVIVG01007724001 Vitis vinifera HOM05D000922 ORTHO05D007418 2.0e-294 1016.1 1144 52.0
Atru.chr9.2494 Acer truncatum HOM05D000922 ORTHO05D007418 1.7e-293 1013.1 1141 56.7
Manes.14G064400 Manihot esculenta HOM05D000922 ORTHO05D007418 2.6e-286 989.2 1145 52.2
Potri.015G078300 Populus trichocarpa HOM05D000922 ORTHO05D007418 1.3e-277 960.3 1143 51.9
Thecc.03G014400 Theobroma cacao HOM05D000922 ORTHO05D007418 1.4e-276 956.8 1139 51.0
CSS0017974 Camellia sinensis var. sinensis HOM05D000922 ORTHO05D007418 2.3e-274 949.5 1181 49.4
Potri.012G082500 Populus trichocarpa HOM05D000922 ORTHO05D007418 2.3e-274 949.5 1140 52.1
Sabra15G0102900 Salix brachista HOM05D000922 ORTHO05D007418 6.7e-274 948.0 1135 53.0
Hma1.2p1_2469F.1_g322680 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 3.7e-272 942.2 1168 49.4
Duzib205G1607 Durio zibethinus HOM05D000922 ORTHO05D007418 9.1e-271 937.6 1113 50.5
Ciclev10018588m.g Citrus clementina HOM05D000922 ORTHO05D007418 2.9e-269 932.6 1162 53.8
TAR622G0946 Trochodendron aralioides HOM05D000922 ORTHO05D007418 1.4e-266 923.7 1203 48.4
TWI23G1000 Tripterygium wilfordii HOM05D000922 ORTHO05D007418 4.8e-264 915.2 1122 49.8
Sabra12G0059200 Salix brachista HOM05D000922 ORTHO05D007418 2.4e-263 912.9 1139 50.1
arahy.Tifrunner.gnm1.ann1.F0ZNJX Arachis hypogaea HOM05D000922 ORTHO05D007418 3.5e-262 909.1 1165 48.7
PGR083G1532 Punica granatum HOM05D000922 ORTHO05D007418 1.7e-261 906.7 1136 47.2
arahy.Tifrunner.gnm1.ann1.9TFG5W Arachis hypogaea HOM05D000922 ORTHO05D007418 2.2e-261 906.4 1167 48.8
Gorai.008G296200 Gossypium raimondii HOM05D000922 ORTHO05D007418 1.4e-260 903.7 1135 48.5
Rhsim08G0173800 Rhododendron simsii HOM05D000922 ORTHO05D007418 1.9e-260 903.3 1179 47.9
ClCG06G017060 Citrullus lanatus HOM05D000922 ORTHO05D007418 2.5e-260 902.9 1172 46.8
Gohir.D12G275700 Gossypium hirsutum HOM05D000922 ORTHO05D007418 3.6e-259 899.0 1135 48.4
Eucgr.B00297 Eucalyptus grandis HOM05D000922 ORTHO05D007418 2.8e-256 889.4 1138 47.6
Duzib068G1349 Durio zibethinus HOM05D000922 ORTHO05D007418 1.1e-255 887.5 1135 48.0
Hma1.2p1_2165F.1_g315780 Hydrangea macrophylla HOM05D000922 ORTHO05D007418 5.0e-253 878.6 920 54.0
Lj9A446G57 Lonicera japonica HOM05D000922 ORTHO05D007418 6.5e-253 878.2 1135 48.4
Glyma.04G184600 Glycine max HOM05D000922 ORTHO05D007418 3.2e-252 875.9 1109 50.1
Glyma.06G181100 Glycine max HOM05D000922 ORTHO05D007418 1.4e-250 870.5 1122 50.4
Ca_16166_v3 Cicer arietinum L. HOM05D000922 ORTHO05D007418 1.3e-248 864.0 1151 47.3
VMungo1309G1607 Vigna mungo HOM05D000922 ORTHO05D007418 4.2e-244 849.0 1150 46.6
Lj1g0015886 Lotus japonicus HOM05D000922 ORTHO05D007418 1.2e-243 847.4 1150 47.6
Psat0ss3962g0400 Pisum sativum HOM05D000922 ORTHO05D007418 4.7e-243 845.5 1135 46.7
Medtr3g077620 Medicago truncatula HOM05D000922 ORTHO05D007418 3.0e-242 842.8 1127 46.5
TPR.G20687 Trifolium pratense HOM05D000922 ORTHO05D007418 1.2e-241 840.9 1149 45.8
Phvul.009G177300 Phaseolus vulgaris HOM05D000922 ORTHO05D007418 1.5e-241 840.5 1140 46.1
DCAR_016480 Daucus carota HOM05D000922 ORTHO05D007418 2.6e-241 839.7 1162 45.7
Nn4g22714 Nelumbo nucifera HOM05D000922 ORTHO05D007418 2.6e-241 839.7 1238 44.7
MELO3C017091.2 Cucumis melo HOM05D000922 ORTHO05D007418 9.8e-241 837.8 1201 44.3
PSO017G6576 Papaver somniferum HOM05D000922 ORTHO05D007418 3.5e-238 829.3 1185 44.0
PSO478G1387 Papaver somniferum HOM05D000922 ORTHO05D007418 1.7e-237 827.0 1181 43.5
Sed0021678 Sechium edule HOM05D000922 ORTHO05D007418 5.0e-237 825.5 1131 45.3
vmacro19399 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 8.0e-235 818.1 559 71.2
Lalb_Chr23g0273281 Lupinus albus HOM05D000922 ORTHO05D007418 1.0e-229 801.2 554 70.6
Sc04g0001750 Simmondsia chinensis HOM05D000922 ORTHO05D007418 5.0e-229 798.9 1164 44.6
Aqoxy3G02884 Aquilegia oxysepala HOM05D000922 ORTHO05D007418 4.0e-226 789.3 1188 43.2
Lsat_1_v5_gn_5_15041 Lactuca sativa HOM05D000922 ORTHO05D007418 9.8e-225 784.6 1108 44.2
Migut.O00098 Erythranthe guttata HOM05D000922 ORTHO05D007418 2.2e-224 783.5 1130 44.3
Cc04_g12110 Coffea canephora HOM05D000922 ORTHO05D007418 7.0e-223 778.5 1125 43.1
MSTRG.23139 Avicennia marina HOM05D000922 ORTHO05D007418 1.1e-220 771.2 1150 43.3
HanXRQChr05g0155771 Helianthus annuus HOM05D000922 ORTHO05D007418 1.6e-219 767.3 1125 42.6
Thhalv10010097m.g Eutrema salsugineum HOM05D000922 ORTHO05D007418 8.9e-218 761.5 1119 43.4
Carub.0005s1432 Capsella rubella HOM05D000922 ORTHO05D007418 1.5e-217 760.8 1141 43.2
EL10Ac5g10730 Beta vulgaris HOM05D000922 ORTHO05D007418 2.9e-216 756.5 1144 43.1
Oeu016401.1 Olea europaea HOM05D000922 ORTHO05D007418 8.3e-216 755.0 1024 47.1
Peaxi162Scf00255g01019 Petunia axillaris HOM05D000922 ORTHO05D007418 1.4e-215 754.2 1181 43.4
Sp5g13830 Schrenkiella parvula HOM05D000922 ORTHO05D007418 1.4e-215 754.2 1115 43.2
Nitab4.5_0001514g0050 Nicotiana tabacum HOM05D000922 ORTHO05D007418 1.9e-215 753.8 1169 43.6
Hund02754 Selenicereus undatus HOM05D000922 ORTHO05D007418 2.4e-215 753.4 1140 42.6
CAN.G1166.3 Capsicum annuum HOM05D000922 ORTHO05D007418 4.6e-214 749.2 917 47.9
Aa31LG4G16800 Aethionema arabicum HOM05D000922 ORTHO05D007418 3.0e-213 746.5 1125 42.2
CARHR156940 Cardamine hirsuta HOM05D000922 ORTHO05D007418 8.6e-213 745.0 1140 41.8
AUR62008194 Chenopodium quinoa HOM05D000922 ORTHO05D007418 1.1e-210 738.0 1129 43.3
AL5G27540 Arabidopsis lyrata HOM05D000922 ORTHO05D007418 1.2e-209 734.6 1133 42.7
Sopen03g031910 Solanum pennellii HOM05D000922 ORTHO05D007418 9.9e-209 731.5 965 45.5
SGA_v2.0_scaffold90G27900 Striga asiatica HOM05D000922 ORTHO05D007418 8.3e-208 728.4 1135 41.6
BcaB05g22925 Brassica carinata HOM05D000922 ORTHO05D007418 2.4e-207 726.9 1132 42.3
Peaxi162Scf00089g01840 Petunia axillaris HOM05D000922 ORTHO05D007418 2.4e-207 726.9 952 44.7
SalBow5G3118 Salvia bowleyana HOM05D000922 ORTHO05D007418 9.2e-207 724.9 1034 45.0
AUR62030946 Chenopodium quinoa HOM05D000922 ORTHO05D007418 7.3e-204 715.3 1126 42.2
SalBow5G1735 Salvia bowleyana HOM05D000922 ORTHO05D007418 7.3e-204 715.3 1031 45.3
Dinv38573 Davidia involucrata HOM05D000922 ORTHO05D007418 3.6e-203 713.0 829 51.5
BcaC09g49852 Brassica carinata HOM05D000922 ORTHO05D007418 1.1e-202 711.4 1136 41.2
AT3G48195 Arabidopsis thaliana HOM05D000922 ORTHO05D007418 1.4e-202 711.1 1103 42.1
A01p25510 Brassica napus HOM05D000922 ORTHO05D007418 3.1e-202 709.9 555 63.1
BraA01t02462Z Brassica rapa HOM05D000922 ORTHO05D007418 8.9e-202 708.4 1117 40.9
BolC1t03155H Brassica oleracea HOM05D000922 ORTHO05D007418 2.0e-201 707.2 1139 40.9
THA.LOC104798972 Tarenaya hassleriana HOM05D000922 ORTHO05D007418 6.0e-198 695.7 1076 42.5
Gohir.A12G275000 Gossypium hirsutum HOM05D000922 ORTHO05D007418 1.3e-197 694.5 966 45.1
ATR1091G081 Amborella trichopoda HOM05D000922 ORTHO05D007418 1.7e-197 694.1 1178 43.6
Ah.02g110580 Amaranthus hybridus HOM05D000922 ORTHO05D007418 5.8e-193 679.1 1202 40.1
Actinidia04732 Actinidia chinensis HOM05D000922 ORTHO05D007418 7.1e-191 672.2 1155 41.0
unitig_26.g9619 Utricularia gibba HOM05D000922 ORTHO05D007418 1.3e-187 661.4 1134 39.3
Solyc03g112830.4 Solanum lycopersicum HOM05D000922 ORTHO05D007418 3.5e-182 643.3 949 41.8
HPP92_009707 Vanilla planifolia HOM05D000922 ORTHO05D007418 3.1e-178 630.2 1061 39.7
CDE06G1806 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 2.2e-176 624.0 1094 39.2
Os01g0549500 Oryza sativa ssp. japonica HOM05D000922 ORTHO05D007418 9.3e-175 618.6 572 53.8
CsaV3_1G001450 Cucumis sativus L. HOM05D000922 ORTHO05D007418 7.1e-167 592.4 938 41.7
Actinidia33077 Actinidia chinensis HOM05D000922 ORTHO05D007418 8.5e-152 542.3 512 56.4
Nitab4.5_0000025g0520 Nicotiana tabacum HOM05D000922 ORTHO05D007418 4.7e-142 510.0 1164 35.2
Zm00001eb162380 Zea mays HOM05D000922 ORTHO05D007418 5.9e-137 493.0 440 57.0
SHI17077 Sapria himalayana HOM05D000922 ORTHO05D007418 2.1e-134 484.6 740 39.3
Cpa.g.sc2974.2 Carica papaya HOM05D000922 ORTHO05D007418 1.3e-131 475.3 316 73.1
Actinidia19330 Actinidia chinensis HOM05D000922 ORTHO05D007418 3.7e-131 473.8 918 39.0
COL.COLO4_30068 Corchorus olitorius HOM05D000922 ORTHO05D007418 3.8e-128 463.8 876 38.5
Mapoly0023s0026 Marchantia polymorpha HOM05D000922 ORTHO05D007418 1.4e-125 455.3 586 44.9
SEGI_19196 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 9.8e-124 449.1 437 53.5
SEGI_24933 Sequoiadendron giganteum HOM05D000922 ORTHO05D007418 1.3e-123 448.7 551 45.4
SMO367G0209 Selaginella moellendorffii HOM05D000922 ORTHO05D007418 1.1e-119 435.6 512 43.2
Pp3c26_1280 Physcomitrium patens HOM05D000922 ORTHO05D007418 5.7e-116 423.3 519 46.2
Cpa.g.sc2974.1 Carica papaya HOM05D000922 ORTHO05D007418 5.0e-104 383.6 791 38.6
ECA246G0682 Erigeron canadensis HOM05D000922 ORTHO05D007418 9.3e-82 309.7 712 34.8
Dinv20638 Davidia involucrata HOM05D000922 ORTHO05D007418 4.8e-78 297.4 228 68.4
ECA246G4214 Erigeron canadensis HOM05D000922 ORTHO05D007418 4.0e-69 267.7 222 60.8
C01p31950 Brassica napus HOM05D000922 ORTHO05D007418 2.6e-68 265.0 770 31.7
FAN04G1664 Fragaria x ananassa HOM05D000922 ORTHO05D007418 1.7e-51 209.1 160 75.6
CDE07G0520 Ceratophyllum demersum HOM05D000922 ORTHO05D007418 6.5e-35 154.1 290 35.2
Lalb_Chr23g0273291 Lupinus albus HOM05D000922 ORTHO05D007418 2.5e-26 125.6 433 33.3
Psat4g066520 Pisum sativum HOM05D001026 ORTHO05D007418 2.8e-22 112.1 80 71.2
vmacro19400 Vaccinium macrocarpon HOM05D000922 ORTHO05D007418 1.0e-19 103.6 625 27.0
PRCOL_00005721 Prasinoderma coloniale HOM05D000922 ORTHO05D007418 1.6e-17 96.3 188 32.4
Actinidia33076 Actinidia chinensis HOM05D000922 ORTHO05D007418 9.8e-15 87.0 173 38.2
Peaxi162Scf00397g00009 Petunia axillaris HOM05D000922 ORTHO05D015732 4.8e-14 84.7 57 64.9
Peaxi162Scf00009g02111 Petunia axillaris HOM05D000861 ORTHO05D007418 8.3e-14 84.0 98 42.9
Peaxi162Scf00470g00024 Petunia axillaris HOM05D000861 ORTHO05D007418 8.3e-14 84.0 87 49.4
CAN.G1651.1 Capsicum annuum HOM05D003439 ORTHO05D000484 1.8e-13 82.8 80 53.8
Peaxi162Scf01130g00212 Petunia axillaris HOM05D000861 ORTHO05D007418 2.4e-13 82.4 51 70.6
Cfa000646 Carpinus fangiana HOM05D000922 ORTHO05D007418 2.7e-12 79.0 151 41.7
Dinv38572 Davidia involucrata HOM05D000922 ORTHO05D008200 3.5e-12 78.6 88 55.7
Peaxi162Scf00304g01332 Petunia axillaris HOM05D000922 ORTHO05D007418 3.5e-12 78.6 55 61.8


User provided reference genes

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