Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0192171 Rosa chinensis HOM05D001582 ORTHO05D001598 3.7e-34 147.5 69 100.0
RcHm_v2.0_Chr5g0083661 Rosa chinensis HOM05D001582 ORTHO05D001598 3.2e-17 91.3 50 80.0
FvH4_3g45511 Fragaria vesca HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
FAN11G0572 Fragaria x ananassa HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
FAN16G2382 Fragaria x ananassa HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
FAN21G3272 Fragaria x ananassa HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
FAN25G1850 Fragaria x ananassa HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
FAN25G2066 Fragaria x ananassa HOM05D001582 ORTHO05D001598 6.0e-16 87.0 51 74.5
Prupe.2G124200 Prunus persica HOM05D001582 ORTHO05D001598 6.0e-16 87.0 64 59.4
MD09G1283600 Malus domestica HOM05D001582 ORTHO05D001598 1.3e-15 85.9 64 59.4
Sabra14G0040400 Salix brachista HOM05D001582 ORTHO05D001598 1.1e-12 76.3 64 56.2
DCAR_029365 Daucus carota HOM05D001582 ORTHO05D001598 3.1e-12 74.7 53 62.3
Potri.014G054600 Populus trichocarpa HOM05D001582 ORTHO05D001598 3.1e-12 74.7 64 56.2
CiPaw.13G028700 Carya illinoinensis HOM05D001582 ORTHO05D001598 9.0e-12 73.2 51 62.7
CANSAT11G1346 Cannabis sativa HOM05D001582 ORTHO05D001598 1.2e-11 72.8 51 64.7
QL10p050493 Quercus lobata HOM05D001582 ORTHO05D001598 1.5e-11 72.4 51 58.8
Cpa.g.sc101.36 Carica papaya HOM05D001582 ORTHO05D001598 2.0e-11 72.0 51 62.7
Cfa011101 Carpinus fangiana HOM05D001582 ORTHO05D001598 4.5e-11 70.9 51 58.8
Haze_02766 Corylus avellana HOM05D001582 ORTHO05D001598 4.5e-11 70.9 51 58.8
Duzib138G0904 Durio zibethinus HOM05D001582 ORTHO05D001598 2.2e-10 68.6 64 51.6
Haze_01785 Corylus avellana HOM05D001582 ORTHO05D001598 2.9e-10 68.2 51 56.9
Lj8C54G3 Lonicera japonica HOM05D001582 ORTHO05D001598 2.9e-10 68.2 50 62.0
Rhsim07G0034200 Rhododendron simsii HOM05D001582 ORTHO05D001598 2.9e-10 68.2 51 54.9
vmacro13480 Vaccinium macrocarpon HOM05D001582 ORTHO05D001598 2.9e-10 68.2 51 54.9
Ciclev10018658m.g Citrus clementina HOM05D001582 ORTHO05D001598 3.8e-10 67.8 51 58.8
GSVIVG01027211001 Vitis vinifera HOM05D001582 ORTHO05D001598 3.8e-10 67.8 51 54.9
Dinv43643 Davidia involucrata HOM05D001582 ORTHO05D001598 4.9e-10 67.4 51 56.9
Dinv44080 Davidia involucrata HOM05D001582 ORTHO05D001598 4.9e-10 67.4 58 53.4
TWI14G1174 Tripterygium wilfordii HOM05D001582 ORTHO05D001598 6.4e-10 67.0 51 56.9
Gohir.A08G059600 Gossypium hirsutum HOM05D001582 ORTHO05D001598 8.4e-10 66.6 51 58.8
Gohir.D08G068800 Gossypium hirsutum HOM05D001582 ORTHO05D001598 8.4e-10 66.6 51 58.8
Gorai.004G072100 Gossypium raimondii HOM05D001582 ORTHO05D001598 8.4e-10 66.6 51 58.8
TWI14G0381 Tripterygium wilfordii HOM05D001582 ORTHO05D001598 8.4e-10 66.6 47 59.6
CSS0040695 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 1.1e-09 66.2 51 56.9
Potri.002G140800 Populus trichocarpa HOM05D001582 ORTHO05D001598 1.1e-09 66.2 51 56.9
arahy.Tifrunner.gnm1.ann1.DM2MGS Arachis hypogaea HOM05D001582 ORTHO05D001598 2.4e-09 65.1 54 48.1
Hma1.2p1_0004F.1_g003970 Hydrangea macrophylla HOM05D001582 ORTHO05D001598 2.4e-09 65.1 51 58.8
Lalb_Chr08g0234411 Lupinus albus HOM05D001582 ORTHO05D001598 2.4e-09 65.1 51 52.9
Eucgr.D01843 Eucalyptus grandis HOM05D001582 ORTHO05D001598 4.2e-09 64.3 64 46.9
Actinidia40395 Actinidia chinensis HOM05D001582 ORTHO05D001598 5.4e-09 63.9 51 52.9
Nitab4.5_0002601g0050 Nicotiana tabacum HOM05D001582 ORTHO05D001598 5.4e-09 63.9 49 55.1
Sopen08g026740 Solanum pennellii HOM05D001582 ORTHO05D001598 5.4e-09 63.9 57 47.4
arahy.Tifrunner.gnm1.ann1.11C4G0 Arachis hypogaea HOM05D001582 ORTHO05D001598 7.1e-09 63.5 51 49.0
Lj6g0002984 Lotus japonicus HOM05D001582 ORTHO05D001598 7.1e-09 63.5 51 52.9
TAR636G1043 Trochodendron aralioides HOM05D001582 ORTHO05D001598 7.1e-09 63.5 51 52.9
Atru.BG.38.p Acer truncatum HOM05D001582 ORTHO05D001598 9.3e-09 63.2 51 54.9
Manes.05G052400 Manihot esculenta HOM05D001582 ORTHO05D001598 1.2e-08 62.8 51 54.9
Aa31LG9G3600 Aethionema arabicum HOM05D001582 ORTHO05D001598 2.1e-08 62.0 50 52.0
Glyma.07G232200 Glycine max HOM05D001582 ORTHO05D001598 2.1e-08 62.0 51 51.0
Solyc08g078230.4 Solanum lycopersicum HOM05D001582 ORTHO05D001598 2.1e-08 62.0 62 43.5
CSS0050238 Camellia sinensis var. sinensis HOM05D001582 ORTHO05D001598 2.7e-08 61.6 51 52.9
Nitab4.5_0009564g0020 Nicotiana tabacum HOM05D001582 ORTHO05D001598 2.7e-08 61.6 56 48.2
COL.COLO4_12438 Corchorus olitorius HOM05D001582 ORTHO05D001598 3.5e-08 61.2 51 52.9
Peaxi162Scf00346g00315 Petunia axillaris HOM05D001582 ORTHO05D001598 3.5e-08 61.2 56 48.2
PGSC0003DMG402026234 Solanum tuberosum HOM05D001582 ORTHO05D001598 3.5e-08 61.2 56 48.2
arahy.Tifrunner.gnm1.ann1.9B5RRL Arachis hypogaea HOM05D001582 ORTHO05D001598 6.0e-08 60.5 51 49.0
MSTRG.16771 Avicennia marina HOM05D001582 ORTHO05D001598 6.0e-08 60.5 58 44.8
CAN.G1312.11 Capsicum annuum HOM05D001582 ORTHO05D001598 6.0e-08 60.5 56 46.4
PSO210G6686 Papaver somniferum HOM05D001582 ORTHO05D001598 6.0e-08 60.5 64 43.8
PGR102G2019 Punica granatum HOM05D001582 ORTHO05D001598 6.0e-08 60.5 51 51.0
VMungo0540G1315 Vigna mungo HOM05D001582 ORTHO05D001598 6.0e-08 60.5 51 49.0
AUR62004129 Chenopodium quinoa HOM05D001582 ORTHO05D001598 7.9e-08 60.1 58 46.6
Medtr4g080580 Medicago truncatula HOM05D001582 ORTHO05D001598 7.9e-08 60.1 51 47.1
Thecc.01G389500 Theobroma cacao HOM05D001582 ORTHO05D001598 1.0e-07 59.7 51 52.9
A04p08170 Brassica napus HOM05D001582 ORTHO05D001598 1.3e-07 59.3 50 52.0
BraA04t16507Z Brassica rapa HOM05D001582 ORTHO05D001598 1.3e-07 59.3 50 52.0
PSO210G1849 Papaver somniferum HOM05D001582 ORTHO05D001598 1.3e-07 59.3 64 43.8
CARHR219920 Cardamine hirsuta HOM05D001582 ORTHO05D001598 1.8e-07 58.9 50 50.0
Ca_03893_v3 Cicer arietinum L. HOM05D001582 ORTHO05D001598 1.8e-07 58.9 51 47.1
Psat4g087160 Pisum sativum HOM05D001582 ORTHO05D001598 2.3e-07 58.5 51 47.1
Phvul.006G014600 Phaseolus vulgaris HOM05D001582 ORTHO05D001598 3.0e-07 58.2 51 47.1
TPR.G35201 Trifolium pratense HOM05D001582 ORTHO05D001598 3.0e-07 58.2 47 51.1
EL10Ac1g00800 Beta vulgaris HOM05D001582 ORTHO05D001598 3.9e-07 57.8 51 47.1
Sc26g0001430 Simmondsia chinensis HOM05D001582 ORTHO05D001598 5.1e-07 57.4 51 45.1
Thhalv10024472m.g Eutrema salsugineum HOM05D001582 ORTHO05D001598 6.7e-07 57.0 50 48.0
Phvul.009G233100 Phaseolus vulgaris HOM05D001582 ORTHO05D001598 6.7e-07 57.0 51 45.1
Sp2g07340 Schrenkiella parvula HOM05D001582 ORTHO05D001598 6.7e-07 57.0 50 50.0
BcaB02g08642 Brassica carinata HOM05D001582 ORTHO05D001598 8.7e-07 56.6 47 51.1
Cc06_g21000 Coffea canephora HOM05D001582 ORTHO05D001598 1.1e-06 56.2 51 43.1
SGA_v2.0_scaffold32G13122 Striga asiatica HOM05D001582 ORTHO05D001598 1.1e-06 56.2 57 42.1
Glyma.20G041100 Glycine max HOM05D001582 ORTHO05D001598 1.5e-06 55.8 51 49.0
Aqoxy3G02327 Aquilegia oxysepala HOM05D001582 ORTHO05D001598 1.9e-06 55.5 51 45.1
Aqoxy6G00088 Aquilegia oxysepala HOM05D001582 ORTHO05D001598 1.9e-06 55.5 51 45.1
ECA240G3483 Erigeron canadensis HOM05D001582 ORTHO05D001598 1.9e-06 55.5 50 50.0
Ah.03g137200 Amaranthus hybridus HOM05D001582 ORTHO05D001598 3.3e-06 54.7 57 42.1
Carub.0007s2847 Capsella rubella HOM05D001582 ORTHO05D001598 5.6e-06 53.9 50 46.0
Hund27399 Selenicereus undatus HOM05D001582 ORTHO05D001598 5.6e-06 53.9 50 42.0
HanXRQChr03g0087381 Helianthus annuus HOM05D001582 ORTHO05D001598 9.6e-06 53.1 50 50.0


User provided reference genes

Program Settings