Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.7e-182 642.1 387 100.0
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 4.4e-140 501.9 400 76.8
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 1.4e-138 496.9 404 78.7
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.8e-138 496.5 401 77.6
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.9e-135 486.5 395 81.8
FAN08G2142 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.0e-104 382.9 372 71.5
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 7.4e-79 298.5 425 53.9
FAN21G1455 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.3e-78 297.7 371 62.8
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 1.7e-75 287.3 302 60.6
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 3.2e-74 283.1 393 54.2
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 3.0e-72 276.6 423 48.9
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.1e-72 275.8 416 50.0
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 1.1e-71 274.6 405 53.1
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 7.4e-71 271.9 396 52.0
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.8e-70 270.0 414 49.8
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 6.2e-70 268.9 405 50.1
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 1.8e-69 267.3 415 49.2
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 6.9e-69 265.4 401 50.6
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.5e-68 264.2 419 48.9
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 3.4e-68 263.1 419 48.7
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 4.5e-68 262.7 422 47.9
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 7.6e-68 261.9 407 49.1
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 7.6e-68 261.9 397 50.4
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 2.2e-67 260.4 414 49.0
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 2.9e-67 260.0 422 47.4
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 3.8e-67 259.6 298 55.7
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 6.5e-67 258.8 419 47.7
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 6.5e-67 258.8 423 46.6
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.4e-66 257.7 418 47.8
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 3.2e-66 256.5 271 60.1
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 3.2e-66 256.5 409 49.1
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 4.2e-66 256.1 414 48.6
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 5.5e-66 255.8 419 48.2
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 5.5e-66 255.8 451 44.6
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 7.1e-66 255.4 277 59.2
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 7.1e-66 255.4 431 47.6
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 9.3e-66 255.0 422 46.9
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 9.3e-66 255.0 418 47.8
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.6e-65 254.2 407 47.9
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 2.7e-65 253.4 386 51.0
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 4.6e-65 252.7 292 57.2
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 6.0e-65 252.3 453 43.7
Medtr2g008810 Medicago truncatula HOM05D004981 ORTHO05D005635 1.0e-64 251.5 378 49.5
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 1.3e-64 251.1 423 48.2
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 1.3e-64 251.1 430 47.0
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 3.0e-64 250.0 290 54.5
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.1e-63 248.1 396 49.5
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 1.5e-63 247.7 285 56.5
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 1.5e-63 247.7 294 54.8
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 5.7e-63 245.7 411 44.8
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 7.4e-63 245.4 403 49.1
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 4.8e-62 242.7 395 47.8
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 8.2e-62 241.9 401 47.1
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.4e-61 241.1 304 52.0
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 1.8e-61 240.7 430 46.5
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 3.1e-61 240.0 270 55.6
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 4.1e-61 239.6 412 46.8
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 6.9e-61 238.8 403 47.1
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 6.9e-61 238.8 412 46.6
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 2.0e-60 237.3 432 45.4
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 5.9e-60 235.7 277 56.0
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.0e-59 235.0 378 49.2
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 1.3e-59 234.6 391 46.3
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 1.7e-59 234.2 423 44.7
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 2.2e-59 233.8 420 46.2
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.2e-59 233.8 247 59.1
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 6.5e-59 232.3 443 42.9
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 8.5e-59 231.9 414 44.7
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 1.4e-58 231.1 264 56.1
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.6e-57 227.6 265 55.5
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 1.6e-57 227.6 401 43.6
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 2.7e-57 226.9 400 45.5
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 1.8e-56 224.2 354 49.7
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 1.8e-56 224.2 348 47.4
Lsat_1_v5_gn_5_107300 Lactuca sativa HOM05D004981 ORTHO05D005635 5.1e-56 222.6 373 49.1
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 8.8e-56 221.9 252 56.0
ECA234G4021 Erigeron canadensis HOM05D004981 ORTHO05D005635 8.8e-56 221.9 384 47.1
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 3.3e-55 219.9 324 51.2
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 9.7e-55 218.4 387 45.2
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 1.7e-54 217.6 382 45.5
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.7e-54 217.6 252 56.3
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 2.8e-54 216.9 377 46.4
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 2.4e-53 213.8 268 50.7
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 3.1e-53 213.4 305 47.5
BraA10t44837Z Brassica rapa HOM05D004981 ORTHO05D005635 9.1e-53 211.8 382 44.2
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 9.1e-53 211.8 389 45.8
A10p27880 Brassica napus HOM05D004981 ORTHO05D005635 1.2e-52 211.5 382 44.0
Sp6g33940 Schrenkiella parvula HOM05D004981 ORTHO05D005635 2.0e-52 210.7 382 44.5
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 4.5e-52 209.5 297 51.5
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.9e-52 209.1 306 49.0
C09p67980 Brassica napus HOM05D004981 ORTHO05D005635 7.7e-52 208.8 261 51.0
PSO541G0435 Papaver somniferum HOM05D004981 ORTHO05D005635 7.7e-52 208.8 404 43.6
BolC9t59557H Brassica oleracea HOM05D004981 ORTHO05D005635 1.0e-51 208.4 277 49.1
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 2.2e-51 207.2 526 39.2
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 8.5e-51 205.3 438 40.2
RcHm_v2.0_Chr7g0224681 Rosa chinensis HOM05D004981 ORTHO05D005635 1.6e-49 201.1 215 58.1
AUR62013118 Chenopodium quinoa HOM05D004981 ORTHO05D005635 4.7e-49 199.5 417 39.6
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 4.7e-49 199.5 410 42.2
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 1.4e-48 198.0 241 55.2
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 3.0e-48 196.8 224 56.2
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 5.1e-48 196.1 404 45.0
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 8.8e-48 195.3 307 43.3
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 8.8e-48 195.3 283 48.1
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 1.5e-47 194.5 384 42.2
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 8.2e-46 188.7 361 43.2
AT5G09390 Arabidopsis thaliana HOM05D004981 ORTHO05D005635 1.1e-45 188.3 394 40.9
AL6G19780 Arabidopsis lyrata HOM05D004981 ORTHO05D005635 9.1e-45 185.3 384 43.0
Thhalv10013574m.g Eutrema salsugineum HOM05D004981 ORTHO05D005635 1.5e-44 184.5 381 42.3
FvH4_4g13240 Fragaria vesca HOM05D004981 ORTHO05D005635 2.6e-44 183.7 269 47.6
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 3.5e-44 183.3 268 49.3
Os09g0372400 Oryza sativa ssp. japonica HOM05D004981 ORTHO05D005635 7.7e-44 182.2 324 47.5
Carub.0006s0794 Capsella rubella HOM05D004981 ORTHO05D005635 2.5e-42 177.2 381 41.5
Medtr5g017190 Medicago truncatula HOM05D004981 ORTHO05D005635 7.2e-42 175.6 240 49.2
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 9.4e-42 175.3 259 45.9
CARHR204020 Cardamine hirsuta HOM05D004981 ORTHO05D005635 3.3e-39 166.8 363 38.0
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 2.8e-38 163.7 233 47.6
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 1.2e-36 158.3 246 44.7
FAN17G2803 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.2e-35 154.1 146 59.6
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 1.2e-33 148.3 240 45.4
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 1.2e-33 148.3 283 38.9
Lj1g0016172 Lotus japonicus HOM05D004981 ORTHO05D005635 1.0e-32 145.2 255 44.3
FAN12G0625 Fragaria x ananassa HOM05D004981 ORTHO05D005635 3.4e-31 140.2 107 74.8
HPP92_013085 Vanilla planifolia HOM05D004981 ORTHO05D005635 1.3e-30 138.3 313 36.1
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 3.7e-30 136.7 233 43.3
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 3.0e-24 117.1 268 35.4
VMungo1383G1991 Vigna mungo HOM05D004981 ORTHO05D005635 1.7e-19 101.3 146 50.0
FAN07G1886 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.5e-15 88.2 70 74.3
Ah.01g009610 Amaranthus hybridus HOM05D004981 ORTHO05D005635 9.8e-15 85.5 162 42.6
Thecc.06G050700 Theobroma cacao HOM05D004981 ORTHO05D005635 3.7e-14 83.6 91 52.7
Lsat_1_v5_gn_5_82561 Lactuca sativa HOM05D004981 ORTHO05D005635 4.1e-13 80.1 79 60.8
C05p07220 Brassica napus HOM05D001624 ORTHO05D005635 3.3e-10 70.5 106 43.4
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 1.5e-07 61.6 98 39.8
Dinv07233 Davidia involucrata HOM05D004981 ORTHO05D005635 2.6e-07 60.8 67 50.7
Cre04.g221350 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 4.4e-07 60.1 161 34.8
PRCOL_00000241 Prasinoderma coloniale HOM05D004981 ORTHO05D005635 1.7e-06 58.2 289 24.9


User provided reference genes

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