Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0191401 Rosa chinensis HOM05D015922 ORTHO05D346943 0.0e+00 1143.6 562 100.0
RcHm_v2.0_Chr1g0357401 Rosa chinensis HOM05D004672 ORTHO05D346782 1.2e-50 205.3 124 81.5
RcHm_v2.0_Chr4g0393431 Rosa chinensis HOM05D001291 ORTHO05D344523 7.5e-24 116.3 164 43.3
FvH4_1g02410 Fragaria vesca HOM05D005706 ORTHO05D025391 1.3e-23 115.5 266 32.7
FAN19G3061 Fragaria x ananassa HOM05D015922 ORTHO05D014694 2.4e-22 111.3 122 47.5
FAN25G2196 Fragaria x ananassa HOM05D015922 ORTHO05D014694 2.4e-22 111.3 122 47.5
RcHm_v2.0_Chr2g0126211 Rosa chinensis HOM05D001115 ORTHO05D001023 4.6e-21 107.1 65 76.9
FvH4_6g26130 Fragaria vesca HOM05D001115 ORTHO05D001023 1.7e-20 105.1 65 76.9
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-19 100.5 111 50.5
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 4.3e-19 100.5 111 50.5
FAN02G3630 Fragaria x ananassa HOM05D001115 ORTHO05D001023 7.3e-19 99.8 63 77.8
FvH4_2g07540 Fragaria vesca HOM05D010612 ORTHO05D196787 4.4e-16 90.5 310 27.1
Duzib248G1488 Durio zibethinus HOM05D001115 ORTHO05D001023 2.4e-14 84.7 68 61.8
TPR.G21758 Trifolium pratense HOM05D001115 ORTHO05D001023 2.4e-14 84.7 69 62.3
Duzib052G0128 Durio zibethinus HOM05D001115 ORTHO05D001023 3.2e-14 84.3 68 60.3
Prupe.3G155500 Prunus persica HOM05D001115 ORTHO05D001023 3.2e-14 84.3 68 57.4
FAN08G2051 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.1e-14 84.0 129 40.3
Ca_25914_v3 Cicer arietinum L. HOM05D001115 ORTHO05D001023 7.1e-14 83.2 69 62.3
Lj3g0023189 Lotus japonicus HOM05D001115 ORTHO05D001023 7.1e-14 83.2 69 62.3
AUR62037360 Chenopodium quinoa HOM05D001115 ORTHO05D001023 9.2e-14 82.8 65 58.5
FvH4_3g30141 Fragaria vesca HOM05D002675 ORTHO05D022630 1.2e-13 82.4 69 52.2
FAN11G0621 Fragaria x ananassa HOM05D002675 ORTHO05D022630 1.2e-13 82.4 69 52.2
THA.LOC104814499 Tarenaya hassleriana HOM05D001115 ORTHO05D001023 2.7e-13 81.3 68 52.9
CiPaw.04G125100 Carya illinoinensis HOM05D001115 ORTHO05D001023 3.5e-13 80.9 68 54.4
FvH4_7g04481 Fragaria vesca HOM05D020505 ORTHO05D198652 3.5e-13 80.9 107 44.9
TAR624G0150 Trochodendron aralioides HOM05D001115 ORTHO05D001023 3.5e-13 80.9 69 55.1
AL3G53850 Arabidopsis lyrata HOM05D001115 ORTHO05D001023 6.0e-13 80.1 68 55.9
AT2G20740 Arabidopsis thaliana HOM05D001115 ORTHO05D001023 6.0e-13 80.1 68 55.9
Carub.0003s3526 Capsella rubella HOM05D001115 ORTHO05D001023 6.0e-13 80.1 68 55.9
Thhalv10002095m.g Eutrema salsugineum HOM05D001115 ORTHO05D001023 6.0e-13 80.1 68 55.9
Glyma.06G293700 Glycine max HOM05D001115 ORTHO05D001023 7.8e-13 79.7 69 59.4
TWI36G0781 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 7.8e-13 79.7 68 58.8
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.0e-12 79.3 58 67.2
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.0e-12 79.3 58 67.2
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.0e-12 79.3 58 67.2
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.0e-12 79.3 58 67.2
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 1.0e-12 79.3 58 67.2
Lalb_Chr19g0135301 Lupinus albus HOM05D001115 ORTHO05D001023 1.0e-12 79.3 69 58.0
Glyma.12G111700 Glycine max HOM05D001115 ORTHO05D001023 1.3e-12 79.0 69 59.4
Phvul.011G117300 Phaseolus vulgaris HOM05D001115 ORTHO05D001023 1.3e-12 79.0 69 59.4
Potri.013G134200 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.3e-12 79.0 66 54.5
Sp3g33990 Schrenkiella parvula HOM05D001115 ORTHO05D001023 1.3e-12 79.0 68 54.4
CANSAT78G1646 Cannabis sativa HOM05D001115 ORTHO05D001023 1.7e-12 78.6 68 57.4
Thecc.02G177800 Theobroma cacao HOM05D001115 ORTHO05D001023 1.7e-12 78.6 69 58.0
Manes.13G147500 Manihot esculenta HOM05D001115 ORTHO05D001023 2.3e-12 78.2 68 58.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 2.3e-12 78.2 58 69.0
RcHm_v2.0_Chr3g0481561 Rosa chinensis HOM05D003404 ORTHO05D029456 2.3e-12 78.2 77 53.2
TAR626G1725 Trochodendron aralioides HOM05D001115 ORTHO05D001023 2.3e-12 78.2 69 58.0
CARHR111410 Cardamine hirsuta HOM05D001115 ORTHO05D001023 3.9e-12 77.4 68 52.9
COL.COLO4_07553 Corchorus olitorius HOM05D001115 ORTHO05D001023 5.1e-12 77.0 68 55.9
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 5.1e-12 77.0 58 65.5
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 5.1e-12 77.0 58 65.5
Potri.019G101800 Populus trichocarpa HOM05D001115 ORTHO05D001023 1.1e-11 75.9 65 53.8
Sabra13G0114000 Salix brachista HOM05D000383 ORTHO05D000730 1.9e-11 75.1 64 53.1
VMungo1127G0219 Vigna mungo HOM05D001115 ORTHO05D001023 2.5e-11 74.7 70 55.7
Atru.chr6.3006 Acer truncatum HOM05D001115 ORTHO05D001023 3.3e-11 74.3 68 57.4
HanXRQChr17g0553551 Helianthus annuus HOM05D001115 ORTHO05D001023 3.3e-11 74.3 61 60.7
TWI18G0226 Tripterygium wilfordii HOM05D001115 ORTHO05D001023 3.3e-11 74.3 68 54.4
MD17G1242500 Malus domestica HOM05D001115 ORTHO05D001023 4.3e-11 73.9 67 53.7
QL08p038410 Quercus lobata HOM05D001115 ORTHO05D001023 5.6e-11 73.6 69 55.1
Sopen07g028090 Solanum pennellii HOM05D001115 ORTHO05D001023 7.3e-11 73.2 70 54.3
MELO3C013608.2 Cucumis melo HOM05D001115 ORTHO05D001023 9.5e-11 72.8 65 50.8
Lsat_1_v5_gn_8_132900 Lactuca sativa HOM05D001115 ORTHO05D001023 9.5e-11 72.8 68 55.9
PGSC0003DMG400018311 Solanum tuberosum HOM05D001115 ORTHO05D001023 9.5e-11 72.8 70 54.3
arahy.Tifrunner.gnm1.ann1.E3DXNV Arachis hypogaea HOM05D001115 ORTHO05D001023 1.2e-10 72.4 69 55.1
CiPaw.03G175400 Carya illinoinensis HOM05D001115 ORTHO05D001023 1.2e-10 72.4 70 51.4
CsaV3_6G013010 Cucumis sativus L. HOM05D007014 ORTHO05D008894 1.2e-10 72.4 65 50.8
Hma1.2p1_1201F.1_g266710 Hydrangea macrophylla HOM05D001115 ORTHO05D001023 1.2e-10 72.4 69 52.2
Nitab4.5_0000512g0160 Nicotiana tabacum HOM05D001115 ORTHO05D001023 1.6e-10 72.0 70 54.3
Nitab4.5_0002526g0050 Nicotiana tabacum HOM05D001115 ORTHO05D001023 1.6e-10 72.0 70 54.3
Peaxi162Scf00132g00422 Petunia axillaris HOM05D001115 ORTHO05D001023 1.6e-10 72.0 69 53.6
RcHm_v2.0_Chr5g0056391 Rosa chinensis HOM05D004963 ORTHO05D006638 1.6e-10 72.0 47 78.7
ClCG02G017570 Citrullus lanatus HOM05D001115 ORTHO05D001023 2.8e-10 71.2 65 50.8
MBI17_g43193_MAGBIO Magnolia biondii HOM05D001115 ORTHO05D001023 2.8e-10 71.2 69 49.3
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 2.8e-10 71.2 74 47.3
Solyc07g054160.3 Solanum lycopersicum HOM05D001115 ORTHO05D001023 3.6e-10 70.9 70 51.4
Duzib235G0287 Durio zibethinus HOM05D001115 ORTHO05D001023 6.2e-10 70.1 64 50.0
Gohir.A10G024600 Gossypium hirsutum HOM05D001115 ORTHO05D001023 6.2e-10 70.1 64 50.0
Gohir.D10G025300 Gossypium hirsutum HOM05D001115 ORTHO05D001023 6.2e-10 70.1 64 50.0
Gorai.011G026600 Gossypium raimondii HOM05D001115 ORTHO05D001023 6.2e-10 70.1 64 50.0
CiPaw.10G047300 Carya illinoinensis HOM05D001115 ORTHO05D001023 8.1e-10 69.7 69 46.4
CAN.G248.20 Capsicum annuum HOM05D001115 ORTHO05D001023 1.1e-09 69.3 70 52.9
Dinv02169 Davidia involucrata HOM05D001115 ORTHO05D001023 1.1e-09 69.3 70 55.7
Dinv12923 Davidia involucrata HOM05D001115 ORTHO05D001023 1.1e-09 69.3 70 55.7
PGR042G0194 Punica granatum HOM05D001115 ORTHO05D001023 1.4e-09 68.9 65 49.2
Sed0008977 Sechium edule HOM05D001115 ORTHO05D001023 1.4e-09 68.9 64 50.0
QL05p039812 Quercus lobata HOM05D001115 ORTHO05D001023 2.3e-09 68.2 68 50.0
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 3.1e-09 67.8 53 62.3
Sabra19G0112900 Salix brachista HOM05D001115 ORTHO05D001023 3.1e-09 67.8 66 50.0
CSS0040668 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 5.2e-09 67.0 68 47.1
Lj2A287T55 Lonicera japonica HOM05D001115 ORTHO05D001023 5.2e-09 67.0 69 49.3
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 5.2e-09 67.0 53 60.4
Aqoxy1G02522 Aquilegia oxysepala HOM05D001115 ORTHO05D001023 8.9e-09 66.2 69 47.8
Eucgr.A01807 Eucalyptus grandis HOM05D001115 ORTHO05D001023 8.9e-09 66.2 70 48.6
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 8.9e-09 66.2 58 60.3
Rhsim04G0067900 Rhododendron simsii HOM05D001115 ORTHO05D001023 8.9e-09 66.2 70 51.4
RhsimUnG0037000 Rhododendron simsii HOM05D001115 ORTHO05D001023 8.9e-09 66.2 70 51.4
Actinidia09860 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.2e-08 65.9 68 51.5
Actinidia11044 Actinidia chinensis HOM05D001115 ORTHO05D001023 1.5e-08 65.5 68 51.5
Aa31LG8G17760 Aethionema arabicum HOM05D001115 ORTHO05D001023 1.5e-08 65.5 97 39.2
vmacro09277 Vaccinium macrocarpon HOM05D001115 ORTHO05D001023 2.0e-08 65.1 70 50.0
Zm00001eb065970 Zea mays HOM05D001115 ORTHO05D001023 2.0e-08 65.1 69 46.4
Migut.H01075 Erythranthe guttata HOM05D001115 ORTHO05D001023 3.4e-08 64.3 68 48.5
PSO675G8670 Papaver somniferum HOM05D001115 ORTHO05D001023 3.4e-08 64.3 69 49.3
GSVIVG01030374001 Vitis vinifera HOM05D001115 ORTHO05D001023 3.4e-08 64.3 69 46.4
Dinv07543 Davidia involucrata HOM05D001115 ORTHO05D001023 4.4e-08 63.9 69 46.4
Duzib160G0769 Durio zibethinus HOM05D001115 ORTHO05D001023 4.4e-08 63.9 64 45.3
Rhsim02G0127800 Rhododendron simsii HOM05D001115 ORTHO05D001023 4.4e-08 63.9 84 36.9
Cpa.g.sc34.143 Carica papaya HOM05D001115 ORTHO05D001023 5.8e-08 63.5 65 47.7
Potri.004G041500 Populus trichocarpa HOM05D001115 ORTHO05D001023 5.8e-08 63.5 69 43.5
CiPaw.09G058100 Carya illinoinensis HOM05D001115 ORTHO05D001023 7.6e-08 63.2 88 40.9
CANSAT35G1125 Cannabis sativa HOM05D001115 ORTHO05D001023 9.9e-08 62.8 68 45.6
HPP92_021013 Vanilla planifolia HOM05D001115 ORTHO05D001023 9.9e-08 62.8 67 49.3
ATR0680G167 Amborella trichopoda HOM05D001115 ORTHO05D001023 1.3e-07 62.4 69 40.6
Sabra11G0034900 Salix brachista HOM05D001115 ORTHO05D001023 1.3e-07 62.4 69 43.5
SGA_v2.0_scaffold109G31116 Striga asiatica HOM05D001115 ORTHO05D001023 1.3e-07 62.4 68 48.5
Cc02_g13180 Coffea canephora HOM05D001115 ORTHO05D001023 2.2e-07 61.6 72 37.5
Rhsim13G0176600 Rhododendron simsii HOM05D001115 ORTHO05D001023 2.2e-07 61.6 69 44.9
BcaC06g36765 Brassica carinata HOM05D001115 ORTHO05D001023 2.9e-07 61.2 68 45.6
C07p00170 Brassica napus HOM05D001115 ORTHO05D001023 2.9e-07 61.2 68 45.6
BolC7t40468H Brassica oleracea HOM05D001115 ORTHO05D001023 2.9e-07 61.2 68 45.6
Cpa.g.sc27.59 Carica papaya HOM05D001115 ORTHO05D001023 2.9e-07 61.2 66 45.5
CAN.G1164.11 Capsicum annuum HOM05D001115 ORTHO05D001023 4.9e-07 60.5 64 40.6
Rhsim10G0080900 Rhododendron simsii HOM05D001115 ORTHO05D001023 6.4e-07 60.1 64 43.8
Dinv14233 Davidia involucrata HOM05D001115 ORTHO05D011468 8.4e-07 59.7 60 45.0
Os04g0679900 Oryza sativa ssp. japonica HOM05D001115 ORTHO05D001023 8.4e-07 59.7 69 42.0
MSTRG.12313 Avicennia marina HOM05D001115 ORTHO05D001023 1.1e-06 59.3 68 50.0
CSS0027947 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 1.1e-06 59.3 67 43.3
FvH4_3g22840 Fragaria vesca HOM05D003404 ORTHO05D004052 1.1e-06 59.3 73 46.6
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 1.1e-06 59.3 137 29.2
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 1.1e-06 59.3 137 29.2
Manes.16G026100 Manihot esculenta HOM05D001115 ORTHO05D001023 1.1e-06 59.3 70 38.6
Nn1g06594 Nelumbo nucifera HOM05D001115 ORTHO05D001023 1.1e-06 59.3 69 42.0
Oeu058381.1 Olea europaea HOM05D001115 ORTHO05D001023 1.1e-06 59.3 68 44.1
SalBow1G1588 Salvia bowleyana HOM05D001115 ORTHO05D001023 1.1e-06 59.3 68 45.6
FvH4_1g15102 Fragaria vesca HOM05D011771 ORTHO05D014214 1.4e-06 58.9 214 26.2
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 1.4e-06 58.9 58 48.3
BraA07t27795Z Brassica rapa HOM05D001115 ORTHO05D001023 1.9e-06 58.5 68 44.1
Eucgr.D00635 Eucalyptus grandis HOM05D001115 ORTHO05D001023 1.9e-06 58.5 65 44.6
BcaB03g16867 Brassica carinata HOM05D001115 ORTHO05D001023 2.4e-06 58.2 68 47.1
A07p00030 Brassica napus HOM05D001115 ORTHO05D001023 2.4e-06 58.2 68 44.1
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 2.4e-06 58.2 60 46.7
DCAR_004081 Daucus carota HOM05D001115 ORTHO05D001023 2.4e-06 58.2 72 40.3
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 3.2e-06 57.8 53 52.8
RhsimUnG0054000 Rhododendron simsii HOM05D001115 ORTHO05D001023 3.2e-06 57.8 64 42.2
CSS0001393 Camellia sinensis var. sinensis HOM05D001115 ORTHO05D001023 4.1e-06 57.4 69 37.7
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 4.1e-06 57.4 60 46.7
PGR004G1130 Punica granatum HOM05D001115 ORTHO05D001023 4.1e-06 57.4 63 46.0
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 4.1e-06 57.4 124 32.3
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 5.4e-06 57.0 58 46.6
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 5.4e-06 57.0 137 29.2
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 7.1e-06 56.6 53 49.1
Ciclev10016622m.g Citrus clementina HOM05D001115 ORTHO05D001023 7.1e-06 56.6 66 42.4
Oeu017970.1 Olea europaea HOM05D001115 ORTHO05D001023 7.1e-06 56.6 68 39.7
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 7.1e-06 56.6 60 48.3


User provided reference genes

Program Settings