Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0191391 Rosa chinensis HOM05D009383 ORTHO05D011656 1.6e-70 269.2 129 100.0
FAN08G0751 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.3e-23 112.1 112 50.0
FvH4_4g22682 Fragaria vesca HOM05D000003 ORTHO05D011656 6.4e-19 97.8 102 45.1
FvH4_3g29411 Fragaria vesca HOM05D000003 ORTHO05D000006 3.2e-18 95.5 98 46.9
FvH4_4g18821 Fragaria vesca HOM05D000003 ORTHO05D000006 5.4e-18 94.7 95 46.3
FvH4_3g29171 Fragaria vesca HOM05D009383 ORTHO05D011656 9.2e-18 94.0 109 45.0
RcHm_v2.0_Chr4g0417671 Rosa chinensis HOM05D000003 ORTHO05D000004 9.2e-18 94.0 89 52.8
FvH4_5g30171 Fragaria vesca HOM05D000003 ORTHO05D000006 3.5e-17 92.0 98 44.9
FvH4_2g19291 Fragaria vesca HOM05D009383 ORTHO05D011656 3.0e-16 89.0 78 55.1
FAN13G1869 Fragaria x ananassa HOM05D009383 ORTHO05D011656 5.0e-16 88.2 98 43.9
FAN05G3431 Fragaria x ananassa HOM05D009383 ORTHO05D011656 6.6e-16 87.8 101 43.6
RcHm_v2.0_Chr5g0072911 Rosa chinensis HOM05D000003 ORTHO05D011656 5.6e-15 84.7 99 37.4
FAN05G3692 Fragaria x ananassa HOM05D009383 ORTHO05D011656 2.8e-14 82.4 102 41.2
RcHm_v2.0_Chr7g0226691 Rosa chinensis HOM05D009383 ORTHO05D011656 8.0e-14 80.9 99 38.4
FAN04G2920 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.4e-12 75.5 74 52.7
FvH4_6g27621 Fragaria vesca HOM05D009383 ORTHO05D011656 5.8e-12 74.7 72 52.8
FvH4_3g05951 Fragaria vesca HOM05D009383 ORTHO05D011656 2.9e-11 72.4 65 53.8
FAN04G0880 Fragaria x ananassa HOM05D009383 ORTHO05D011656 1.1e-10 70.5 72 47.2
Peaxi162Scf00593g00326 Petunia axillaris HOM05D001426 ORTHO05D001389 1.9e-10 69.7 103 39.8
Atru.chr1.3779 Acer truncatum HOM05D000003 ORTHO05D000167 2.0e-09 66.2 83 42.2
FAN28G0416 Fragaria x ananassa HOM05D009383 ORTHO05D011656 2.0e-09 66.2 56 57.1
RcHm_v2.0_Chr7g0229351 Rosa chinensis HOM05D009322 ORTHO05D010713 2.0e-09 66.2 98 32.7
FAN11G3707 Fragaria x ananassa HOM05D009383 ORTHO05D011656 4.6e-09 65.1 64 53.1
PSO063G1632 Papaver somniferum HOM05D000003 ORTHO05D001026 6.0e-09 64.7 91 37.4
CANSAT01G1919 Cannabis sativa HOM05D000003 ORTHO05D000167 1.0e-08 63.9 125 33.6
QL04p095922 Quercus lobata HOM05D000003 ORTHO05D011877 1.0e-08 63.9 100 36.0
PSO675G7073 Papaver somniferum HOM05D000003 ORTHO05D001026 1.3e-08 63.5 87 37.9
PSO063G5501 Papaver somniferum HOM05D000003 ORTHO05D001026 2.3e-08 62.8 98 35.7
Atru.chr4.1214 Acer truncatum HOM05D000003 ORTHO05D000167 3.0e-08 62.4 83 39.8
CANSAT64G1154 Cannabis sativa HOM05D000003 ORTHO05D000004 6.6e-08 61.2 87 39.1
Peaxi162Scf00632g00037 Petunia axillaris HOM05D001426 ORTHO05D001389 8.6e-08 60.8 103 36.9
FAN16G2661 Fragaria x ananassa HOM05D009383 ORTHO05D035559 1.1e-07 60.5 81 39.5
PSO063G1602 Papaver somniferum HOM05D000003 ORTHO05D001026 1.1e-07 60.5 103 33.0
PSO063G1913 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-07 60.5 91 37.4
Prupe.7G049300 Prunus persica HOM05D000003 ORTHO05D000004 1.1e-07 60.5 101 30.7
RcHm_v2.0_Chr7g0236061 Rosa chinensis HOM05D000003 ORTHO05D000004 1.1e-07 60.5 85 40.0
PSO063G0794 Papaver somniferum HOM05D000003 ORTHO05D001026 1.5e-07 60.1 98 33.7
RcHm_v2.0_Chr5g0016681 Rosa chinensis HOM05D000003 ORTHO05D000004 1.5e-07 60.1 80 40.0
CANSAT01G0882 Cannabis sativa HOM05D000003 ORTHO05D000167 1.9e-07 59.7 91 39.6
RcHm_v2.0_Chr3g0463661 Rosa chinensis HOM05D009383 ORTHO05D011656 1.9e-07 59.7 41 58.5
Atru.chr13.1294 Acer truncatum HOM05D000003 ORTHO05D000167 2.5e-07 59.3 83 32.5
CANSAT25G1682 Cannabis sativa HOM05D000003 ORTHO05D000167 2.5e-07 59.3 102 32.4
FAN24G0846 Fragaria x ananassa HOM05D009383 ORTHO05D011656 2.5e-07 59.3 90 38.9
Prupe.3G063400 Prunus persica HOM05D000003 ORTHO05D000167 2.5e-07 59.3 92 33.7
RcHm_v2.0_Chr5g0005651 Rosa chinensis HOM05D014406 ORTHO05D015627 2.5e-07 59.3 85 38.8
FAN15G1070 Fragaria x ananassa HOM05D009383 ORTHO05D011656 3.3e-07 58.9 76 40.8
RcHm_v2.0_Chr3g0481921 Rosa chinensis HOM05D000003 ORTHO05D000004 4.3e-07 58.5 61 49.2
CAN.G108.58 Capsicum annuum HOM05D001426 ORTHO05D001389 5.6e-07 58.2 101 33.7
FAN02G1737 Fragaria x ananassa HOM05D009383 ORTHO05D011656 5.6e-07 58.2 78 41.0
PSO541G1607 Papaver somniferum HOM05D000003 ORTHO05D001026 5.6e-07 58.2 94 34.0
Atru.chr5.2963 Acer truncatum HOM05D000003 ORTHO05D000006 7.3e-07 57.8 88 34.1
Aqoxy6G02498 Aquilegia oxysepala HOM05D000003 ORTHO05D018399 7.3e-07 57.8 87 37.9
CANSAT25G1672 Cannabis sativa HOM05D000003 ORTHO05D000167 7.3e-07 57.8 91 39.6
PSO675G3281 Papaver somniferum HOM05D000003 ORTHO05D001026 7.3e-07 57.8 93 36.6
RcHm_v2.0_Chr3g0486981 Rosa chinensis HOM05D000003 ORTHO05D006737 7.3e-07 57.8 99 33.3
Atru.chr13.2526 Acer truncatum HOM05D000003 ORTHO05D000167 9.5e-07 57.4 82 35.4
CANSAT25G3451 Cannabis sativa HOM05D000003 ORTHO05D000004 9.5e-07 57.4 93 26.9
Nitab4.5_0002611g0080 Nicotiana tabacum HOM05D000003 ORTHO05D000022 9.5e-07 57.4 80 38.8
PSO541G0547 Papaver somniferum HOM05D000003 ORTHO05D001026 9.5e-07 57.4 98 30.6
QL04p016227 Quercus lobata HOM05D000003 ORTHO05D011877 9.5e-07 57.4 84 36.9
Aqoxy4G01593 Aquilegia oxysepala HOM05D000003 ORTHO05D018399 1.2e-06 57.0 99 35.4
CANSAT56G3043 Cannabis sativa HOM05D000003 ORTHO05D000167 1.2e-06 57.0 92 31.5
Peaxi162Scf00422g00071 Petunia axillaris HOM05D001426 ORTHO05D001389 1.2e-06 57.0 85 41.2
vmacro12951 Vaccinium macrocarpon HOM05D002252 ORTHO05D002451 1.2e-06 57.0 91 36.3
Atru.chr3.1850 Acer truncatum HOM05D000003 ORTHO05D000004 1.6e-06 56.6 85 31.8
CANSAT56G1390 Cannabis sativa HOM05D000003 ORTHO05D000167 1.6e-06 56.6 83 34.9
FvH4_2g17852 Fragaria vesca HOM05D009383 ORTHO05D011656 1.6e-06 56.6 35 54.3
Nitab4.5_0000411g0070 Nicotiana tabacum HOM05D000003 ORTHO05D004636 2.1e-06 56.2 98 35.7
CANSAT78G1435 Cannabis sativa HOM05D000003 ORTHO05D000004 2.8e-06 55.8 95 31.6
RcHm_v2.0_Chr1g0314431 Rosa chinensis HOM05D000003 ORTHO05D006737 2.8e-06 55.8 85 34.1
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 3.6e-06 55.5 99 32.3
QL04p036022 Quercus lobata HOM05D000003 ORTHO05D000167 3.6e-06 55.5 85 34.1
RcHm_v2.0_Chr4g0396331 Rosa chinensis HOM05D009383 ORTHO05D011656 3.6e-06 55.5 45 53.3
Atru.chr10.2102 Acer truncatum HOM05D000003 ORTHO05D000167 4.7e-06 55.1 86 32.6
Atru.chr8.782 Acer truncatum HOM05D000003 ORTHO05D000004 4.7e-06 55.1 81 34.6
FAN18G3219 Fragaria x ananassa HOM05D009383 ORTHO05D011656 4.7e-06 55.1 62 48.4
Nitab4.5_0004734g0040 Nicotiana tabacum HOM05D000003 ORTHO05D000022 4.7e-06 55.1 100 31.0
Os01g0930300 Oryza sativa ssp. japonica HOM05D000003 ORTHO05D000167 4.7e-06 55.1 90 37.8
QL10p029361 Quercus lobata HOM05D000003 ORTHO05D011877 4.7e-06 55.1 97 36.1
Atru.chr1.3957 Acer truncatum HOM05D000003 ORTHO05D000167 6.2e-06 54.7 81 34.6
FvH4_6g40361 Fragaria vesca HOM05D000003 ORTHO05D000006 6.2e-06 54.7 45 55.6
PSO170G6566 Papaver somniferum HOM05D000003 ORTHO05D001026 6.2e-06 54.7 83 34.9
QL06p037858 Quercus lobata HOM05D000003 ORTHO05D011877 6.2e-06 54.7 77 40.3
Atru.chr1.2640 Acer truncatum HOM05D000003 ORTHO05D000126 8.1e-06 54.3 91 30.8
Atru.chr2.2135 Acer truncatum HOM05D000003 ORTHO05D000004 8.1e-06 54.3 80 35.0
CANSAT80G2658 Cannabis sativa HOM05D000003 ORTHO05D000167 8.1e-06 54.3 83 33.7
Lj4g0020141 Lotus japonicus HOM05D000003 ORTHO05D000126 8.1e-06 54.3 101 31.7


User provided reference genes

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