Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0191031 Rosa chinensis HOM05D003221 ORTHO05D016847 8.9e-27 122.9 62 100.0
FvH4_3g25540 Fragaria vesca HOM05D003221 ORTHO05D004432 5.2e-19 97.1 51 92.2
FAN11G1198 Fragaria x ananassa HOM05D003221 ORTHO05D004432 5.2e-19 97.1 51 92.2
FAN21G3720 Fragaria x ananassa HOM05D003221 ORTHO05D004432 5.2e-19 97.1 51 92.2
FAN25G3633 Fragaria x ananassa HOM05D003221 ORTHO05D004432 5.2e-19 97.1 51 92.2
RcHm_v2.0_Chr7g0191061 Rosa chinensis HOM05D003221 ORTHO05D004432 5.2e-19 97.1 51 92.2
MD06G1151500 Malus domestica HOM05D003221 ORTHO05D004432 1.2e-18 95.9 51 90.2
Prupe.5G156700 Prunus persica HOM05D003221 ORTHO05D004432 1.2e-18 95.9 51 90.2
arahy.Tifrunner.gnm1.ann1.BX07LP Arachis hypogaea HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
arahy.Tifrunner.gnm1.ann1.UKG7ME Arachis hypogaea HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
MSTRG.4587 Avicennia marina HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Cc04_g10290 Coffea canephora HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Dinv11105 Davidia involucrata HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Dinv38467 Davidia involucrata HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
HanXRQChr09g0272871 Helianthus annuus HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
HanXRQChr16g0497921 Helianthus annuus HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Hma1.2p1_0209F.1_g088430 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Lsat_1_v5_gn_4_78821 Lactuca sativa HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Lj5A100G57 Lonicera japonica HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Lj9A475T64 Lonicera japonica HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Lalb_Chr08g0236971 Lupinus albus HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Manes.06G115400 Manihot esculenta HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Oeu011575.1 Olea europaea HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Phvul.003G208200 Phaseolus vulgaris HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Potri.015G090900 Populus trichocarpa HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
VMungo1215G0589 Vigna mungo HOM05D003221 ORTHO05D004432 2.6e-18 94.7 51 88.2
Atru.chr9.1015 Acer truncatum HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Actinidia16191 Actinidia chinensis HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Ah.08g218090 Amaranthus hybridus HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Ah.15g095310 Amaranthus hybridus HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
EL10Ac7g18076 Beta vulgaris HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
CSS0000758 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
CSS0008999 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
CiPaw.12G035900 Carya illinoinensis HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
AUR62001280 Chenopodium quinoa HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
AUR62025726 Chenopodium quinoa HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
COL.COLO4_22963 Corchorus olitorius HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Duzib084G0381 Durio zibethinus HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Gohir.D09G245900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Gorai.006G270400 Gossypium raimondii HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
MD06G1156100 Malus domestica HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Potri.012G093500 Populus trichocarpa HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
QL10p005036 Quercus lobata HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Rhsim08G0185100 Rhododendron simsii HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Hund05648 Selenicereus undatus HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Thecc.03G123100 Theobroma cacao HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
TWI14G1333 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
vmacro19238 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
GSVIVG01007538001 Vitis vinifera HOM05D003221 ORTHO05D004432 3.4e-18 94.4 51 88.2
Sc04g0000950 Simmondsia chinensis HOM05D003221 ORTHO05D004432 4.4e-18 94.0 51 86.3
Migut.I00477 Erythranthe guttata HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Glyma.17G127100 Glycine max HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Gohir.A03G062400 Gossypium hirsutum HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Gorai.003G109300 Gossypium raimondii HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Lj4g0007668 Lotus japonicus HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Lalb_Chr07g0183231 Lupinus albus HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
Lalb_Chr23g0273491 Lupinus albus HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
MD14G1163300 Malus domestica HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 88.2
THA.LOC104825005 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 5.8e-18 93.6 51 86.3
CANSAT80G0340 Cannabis sativa HOM05D003221 ORTHO05D004432 7.5e-18 93.2 51 86.3
Cfa018890 Carpinus fangiana HOM05D003221 ORTHO05D004432 7.5e-18 93.2 51 86.3
Ciclev10020559m.g Citrus clementina HOM05D003221 ORTHO05D004432 7.5e-18 93.2 51 86.3
FAN16G0231 Fragaria x ananassa HOM05D003221 ORTHO05D004432 7.5e-18 93.2 51 90.2
Gohir.D03G103700 Gossypium hirsutum HOM05D003221 ORTHO05D004432 7.5e-18 93.2 51 84.3
Eucgr.I00301 Eucalyptus grandis HOM05D003221 ORTHO05D004432 9.8e-18 92.8 51 86.3
Sabra15G0113000 Salix brachista HOM05D003221 ORTHO05D004432 9.8e-18 92.8 51 84.3
Aqoxy1G01463 Aquilegia oxysepala HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
ECA232G2465 Erigeron canadensis HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
Gohir.A09G245000 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
Hma1.2p1_0046F.1_g027520 Hydrangea macrophylla HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
MBI06_g05239_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
MBI06_g43853_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
MBI11_g19363_MAGBIO Magnolia biondii HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 84.3
Manes.14G055233 Manihot esculenta HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
Nn4g22458 Nelumbo nucifera HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
PSO445G0024 Papaver somniferum HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
SGA_v2.0_scaffold350G49637 Striga asiatica HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 84.3
TWI39G0859 Tripterygium wilfordii HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
TAR371G1119 Trochodendron aralioides HOM05D003221 ORTHO05D004432 1.3e-17 92.4 51 86.3
Ca_05563_v3 Cicer arietinum L. HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
Gohir.D12G190900 Gossypium hirsutum HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 86.3
Medtr4g104080 Medicago truncatula HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
PSO063G7046 Papaver somniferum HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 86.3
PSO782G0707 Papaver somniferum HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 86.3
Psat4g064960 Pisum sativum HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
PGR083G1499 Punica granatum HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
Sed0014675 Sechium edule HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
TPR.G16844 Trifolium pratense HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
TPR.G37528 Trifolium pratense HOM05D003221 ORTHO05D004432 1.7e-17 92.0 51 84.3
ATR0681G172 Amborella trichopoda HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
ATR0824G170 Amborella trichopoda HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
Cpa.g.sc4.74 Carica papaya HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
ClCG03G003520 Citrullus lanatus HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
MELO3C002335.2 Cucumis melo HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
CsaV3_1G009320 Cucumis sativus L. HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
Duzib205G0731 Durio zibethinus HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 86.3
Oeu033323.1 Olea europaea HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
SalBow5G2462 Salvia bowleyana HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 82.4
Sed0024107 Sechium edule HOM05D003221 ORTHO05D004432 2.2e-17 91.7 51 84.3
DCAR_027511 Daucus carota HOM05D003221 ORTHO05D004432 2.9e-17 91.3 51 82.4
FAN04G2436 Fragaria x ananassa HOM05D003221 ORTHO05D004432 2.9e-17 91.3 51 86.3
Aa31LG7G11020 Aethionema arabicum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
AL7G28360 Arabidopsis lyrata HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
AT4G24820 Arabidopsis thaliana HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Carub.0007s1623 Capsella rubella HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
CAN.G990.4 Capsicum annuum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
CARHR232220 Cardamine hirsuta HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Thhalv10025431m.g Eutrema salsugineum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Glyma.05G044500 Glycine max HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Glyma.05G044900 Glycine max HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Nn3g16577 Nelumbo nucifera HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Nitab4.5_0000366g0070 Nicotiana tabacum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Nitab4.5_0006219g0010 Nicotiana tabacum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Peaxi162Scf00324g00334 Petunia axillaris HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Sp7g22810 Schrenkiella parvula HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Solyc07g009140.3 Solanum lycopersicum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
Sopen07g017130 Solanum pennellii HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
PGSC0003DMG402024210 Solanum tuberosum HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
THA.LOC104811603 Tarenaya hassleriana HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 84.3
unitig_747.g21330 Utricularia gibba HOM05D003221 ORTHO05D004432 3.7e-17 90.9 51 82.4
CSS0006566 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 4.9e-17 90.5 51 84.3
Duzib068G0069 Durio zibethinus HOM05D003221 ORTHO05D004432 4.9e-17 90.5 51 82.4
Gorai.008G204800 Gossypium raimondii HOM05D003221 ORTHO05D004432 4.9e-17 90.5 51 84.3
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 4.9e-17 90.5 51 84.3
Gohir.D02G137350 Gossypium hirsutum HOM05D003221 ORTHO05D004432 6.4e-17 90.1 51 84.3
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 6.4e-17 90.1 49 85.7
Lj5g0004669 Lotus japonicus HOM05D003221 ORTHO05D004432 6.4e-17 90.1 51 82.4
SEGI_11838 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 6.4e-17 90.1 51 84.3
SEGI_32179 Sequoiadendron giganteum HOM05D003221 ORTHO05D004432 6.4e-17 90.1 51 84.3
MSTRG.22924 Avicennia marina HOM05D003221 ORTHO05D004432 8.3e-17 89.7 51 82.4
CSS0035074 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.1e-16 89.4 51 84.3
CDE07G0656 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 1.1e-16 89.4 51 82.4
Pp3c12_14600 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.1e-16 89.4 51 80.4
BcaB03g12449 Brassica carinata HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BcaC06g32856 Brassica carinata HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BcaC07g38153 Brassica carinata HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BcaNung07243 Brassica carinata HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
A01p16130 Brassica napus HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
A03p55560 Brassica napus HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
A08p21360 Brassica napus HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
C01p20120 Brassica napus HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
C07p53800 Brassica napus HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BolC1t01941H Brassica oleracea HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BolC7t45870H Brassica oleracea HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BraA01t01549Z Brassica rapa HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BraA03t14625Z Brassica rapa HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
BraA08t34085Z Brassica rapa HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
Gorai.005G153700 Gossypium raimondii HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
HPP92_024646 Vanilla planifolia HOM05D003221 ORTHO05D004432 1.4e-16 89.0 51 82.4
Pp3c10_7470 Physcomitrium patens HOM05D003221 ORTHO05D004432 1.9e-16 88.6 51 80.4
CAN.G886.11 Capsicum annuum HOM05D003221 ORTHO05D004432 2.4e-16 88.2 51 80.4
CDE04G0976 Ceratophyllum demersum HOM05D003221 ORTHO05D004432 2.4e-16 88.2 51 80.4
Os02g0600100 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 4.1e-16 87.4 51 80.4
Zm00001eb079270 Zea mays HOM05D003221 ORTHO05D004432 4.1e-16 87.4 51 80.4
CARHR238350 Cardamine hirsuta HOM05D003221 ORTHO05D004432 5.4e-16 87.0 51 80.4
Eucgr.K02756 Eucalyptus grandis HOM05D003221 ORTHO05D004432 7.0e-16 86.7 51 82.4
Os04g0485000 Oryza sativa ssp. japonica HOM05D003221 ORTHO05D004432 7.0e-16 86.7 51 80.4
TAR626G0734 Trochodendron aralioides HOM05D003221 ORTHO05D004432 7.0e-16 86.7 51 78.4
vmacro01936 Vaccinium macrocarpon HOM05D003221 ORTHO05D004432 7.0e-16 86.7 52 82.7
CSS0004138 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 1.2e-15 85.9 51 82.4
Medtr8g046560 Medicago truncatula HOM05D003221 ORTHO05D004432 1.6e-15 85.5 51 78.4
BolC8t48588H Brassica oleracea HOM05D003221 ORTHO05D004432 2.7e-15 84.7 51 78.4
Mapoly0014s0216 Marchantia polymorpha HOM05D003221 ORTHO05D004432 3.5e-15 84.3 51 76.5
SMO118G0024 Selaginella moellendorffii HOM05D003221 ORTHO05D004432 3.5e-15 84.3 51 74.5
CSS0036492 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 2.3e-14 81.6 71 63.4
CSS0042115 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 3.0e-14 81.3 71 62.0
AagrBONN_evm.TU.Sc2ySwM_228.4449 Anthoceros agrestis HOM05D003221 ORTHO05D004432 5.0e-14 80.5 51 70.6
CSS0020325 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 5.0e-14 80.5 71 62.0
RcHm_v2.0_Chr5g0044171 Rosa chinensis HOM05D003221 ORTHO05D016847 5.0e-14 80.5 51 80.4
CBR_g40800 Chara braunii HOM05D003221 ORTHO05D004432 3.6e-12 74.3 52 65.4
Haze_07275 Corylus avellana HOM05D003221 ORTHO05D004630 4.7e-12 73.9 37 91.9
FAN13G1328 Fragaria x ananassa HOM05D003221 ORTHO05D016847 4.7e-12 73.9 37 94.6
QL05p041001 Quercus lobata HOM05D003221 ORTHO05D016847 4.7e-12 73.9 37 91.9
CSS0000638 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D004432 8.1e-12 73.2 51 74.5
Haze_26412 Corylus avellana HOM05D003221 ORTHO05D004432 8.1e-12 73.2 49 67.3
Cre13.g581450 Chlamydomonas reinhardtii HOM05D003221 ORTHO05D004432 2.3e-11 71.6 48 70.8
CSS0046486 Camellia sinensis var. sinensis HOM05D003221 ORTHO05D016847 1.2e-10 69.3 61 60.7
MCO04G155 Micromonas commoda HOM05D003221 ORTHO05D004432 9.8e-10 66.2 50 62.0
Sp4g14070 Schrenkiella parvula HOM05D003221 ORTHO05D016847 2.9e-09 64.7 54 57.4
PSO170G4862 Papaver somniferum HOM05D003221 ORTHO05D004432 2.3e-06 55.1 30 86.7
PRCOL_00002590 Prasinoderma coloniale HOM05D003221 ORTHO05D004432 5.1e-06 53.9 44 56.8


User provided reference genes

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