Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0190441 Rosa chinensis HOM05D005072 ORTHO05D006209 0.0e+00 1176.4 597 100.0
FAN18G1184 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.1e-302 1042.7 599 87.8
FvH4_5g07960 Fragaria vesca HOM05D005072 ORTHO05D006209 3.5e-298 1027.7 599 86.6
FAN13G0840 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.8e-294 1015.4 599 86.5
FAN04G1678 Fragaria x ananassa HOM05D005072 ORTHO05D006209 6.5e-292 1006.9 599 85.8
FAN08G0571 Fragaria x ananassa HOM05D005072 ORTHO05D006209 1.4e-291 1005.7 599 85.6
Prupe.4G269200 Prunus persica HOM05D005072 ORTHO05D006209 2.0e-264 915.6 597 77.1
MD03G1163400 Malus domestica HOM05D005072 ORTHO05D006209 1.3e-252 876.3 600 75.2
Dinv24604 Davidia involucrata HOM05D005072 ORTHO05D006209 1.0e-244 850.1 596 72.7
Hma1.2p1_1843F.1_g305080 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 1.7e-244 849.4 588 72.1
TWI79G0414 Tripterygium wilfordii HOM05D005072 ORTHO05D006209 2.1e-242 842.4 601 71.4
Ciclev10014694m.g Citrus clementina HOM05D005072 ORTHO05D006209 8.0e-242 840.5 589 71.1
Cfa010164 Carpinus fangiana HOM05D005072 ORTHO05D006209 4.9e-239 831.2 602 71.1
TAR623G1264 Trochodendron aralioides HOM05D005072 ORTHO05D006209 5.2e-233 811.2 603 70.0
Atru.chr3.2833 Acer truncatum HOM05D005072 ORTHO05D006209 2.9e-231 805.4 598 68.9
Thecc.09G251600 Theobroma cacao HOM05D005072 ORTHO05D006209 3.2e-230 802.0 596 67.8
Haze_23549 Corylus avellana HOM05D005072 ORTHO05D006209 2.7e-229 798.9 627 67.5
Phvul.008G203700 Phaseolus vulgaris HOM05D005072 ORTHO05D006209 1.3e-223 780.0 589 65.4
Ca_06178_v3 Cicer arietinum L. HOM05D005072 ORTHO05D006209 2.2e-223 779.2 590 66.4
COL.COLO4_33262 Corchorus olitorius HOM05D005072 ORTHO05D006209 2.2e-223 779.2 595 66.4
Glyma.14G038000 Glycine max HOM05D005072 ORTHO05D006209 2.4e-222 775.8 593 65.6
Duzib170G0952 Durio zibethinus HOM05D005072 ORTHO05D006209 4.1e-222 775.0 596 66.4
Glyma.02G277200 Glycine max HOM05D005072 ORTHO05D006209 4.1e-222 775.0 588 66.2
Lalb_Chr10g0106071 Lupinus albus HOM05D005072 ORTHO05D006209 4.6e-221 771.5 578 68.2
Gohir.D08G019500 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.0e-220 770.4 602 65.4
Gohir.A08G009400 Gossypium hirsutum HOM05D005072 ORTHO05D006209 1.7e-220 769.6 596 65.4
Gorai.004G014000 Gossypium raimondii HOM05D005072 ORTHO05D006209 5.1e-220 768.1 602 65.3
Potri.009G022200 Populus trichocarpa HOM05D005072 ORTHO05D006209 1.5e-219 766.5 599 65.8
GSVIVG01037391001 Vitis vinifera HOM05D005072 ORTHO05D006209 2.5e-219 765.8 606 65.8
TPR.G16394 Trifolium pratense HOM05D005072 ORTHO05D006209 3.6e-218 761.9 590 65.6
Cpa.g.sc34.205 Carica papaya HOM05D005072 ORTHO05D006209 8.9e-217 757.3 596 65.6
CAN.G651.4 Capsicum annuum HOM05D005072 ORTHO05D006209 1.2e-216 756.9 591 65.7
CiPaw.14G108700 Carya illinoinensis HOM05D005072 ORTHO05D006209 7.6e-216 754.2 514 72.6
PSO675G4775 Papaver somniferum HOM05D005072 ORTHO05D006209 1.3e-215 753.4 605 65.1
SGA_v2.0_scaffold16G07591 Striga asiatica HOM05D005072 ORTHO05D006209 1.3e-215 753.4 605 64.0
Medtr5g088780 Medicago truncatula HOM05D005072 ORTHO05D006209 2.2e-215 752.7 596 64.8
Cc01_g07180 Coffea canephora HOM05D005072 ORTHO05D006209 3.8e-215 751.9 606 65.0
Manes.02G135100 Manihot esculenta HOM05D005072 ORTHO05D006209 1.1e-214 750.4 518 71.8
arahy.Tifrunner.gnm1.ann1.BCWF2K Arachis hypogaea HOM05D005072 ORTHO05D006209 1.4e-214 750.0 590 62.9
CANSAT54G0197 Cannabis sativa HOM05D005072 ORTHO05D006209 1.9e-214 749.6 601 65.4
vmacro14280 Vaccinium macrocarpon HOM05D005072 ORTHO05D006209 1.9e-214 749.6 597 65.7
Aqoxy2G00052 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 2.4e-214 749.2 601 63.9
Sopen01g004520 Solanum pennellii HOM05D005072 ORTHO05D006209 1.6e-213 746.5 598 64.9
Oeu032059.1 Olea europaea HOM05D005072 ORTHO05D006209 3.5e-213 745.3 598 64.4
PSO541G4749 Papaver somniferum HOM05D005072 ORTHO05D006209 3.5e-213 745.3 605 64.0
Psat0s680g0080 Pisum sativum HOM05D005072 ORTHO05D006209 1.0e-212 743.8 590 63.7
Nitab4.5_0002300g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 1.7e-212 743.0 609 64.5
HanXRQChr05g0144311 Helianthus annuus HOM05D005072 ORTHO05D006209 2.3e-212 742.7 586 65.0
Solyc01g009030.4 Solanum lycopersicum HOM05D005072 ORTHO05D006209 3.0e-212 742.3 602 64.5
PGR102G1516 Punica granatum HOM05D005072 ORTHO05D006209 4.7e-210 734.9 595 63.2
ClCG02G022550 Citrullus lanatus HOM05D005072 ORTHO05D006209 3.1e-209 732.3 602 64.0
Migut.N02404 Erythranthe guttata HOM05D005072 ORTHO05D006209 1.5e-208 729.9 606 63.2
QL01p016041 Quercus lobata HOM05D005072 ORTHO05D006209 1.5e-208 729.9 789 52.2
ECA238G1118 Erigeron canadensis HOM05D005072 ORTHO05D006209 7.6e-208 727.6 595 62.4
Eucgr.B03761 Eucalyptus grandis HOM05D005072 ORTHO05D006209 1.7e-207 726.5 595 62.9
Lj1C290G6 Lonicera japonica HOM05D005072 ORTHO05D006209 1.7e-207 726.5 602 64.0
LjContig00564g0010958 Lotus japonicus HOM05D005072 ORTHO05D006209 3.8e-207 725.3 583 64.5
THA.LOC104799144 Tarenaya hassleriana HOM05D005072 ORTHO05D006209 3.8e-207 725.3 594 61.1
Hund21956 Selenicereus undatus HOM05D005072 ORTHO05D006209 1.9e-206 723.0 588 62.2
arahy.Tifrunner.gnm1.ann1.2SU3A5 Arachis hypogaea HOM05D005072 ORTHO05D006209 4.2e-206 721.8 611 59.7
CsaV3_6G038680 Cucumis sativus L. HOM05D005072 ORTHO05D006209 1.2e-205 720.3 598 62.9
MBI13_g20755_MAGBIO Magnolia biondii HOM05D005072 ORTHO05D006209 2.7e-205 719.2 661 58.7
Nitab4.5_0000428g0060 Nicotiana tabacum HOM05D005072 ORTHO05D006209 5.1e-204 714.9 585 63.9
CARHR200820 Cardamine hirsuta HOM05D005072 ORTHO05D006209 6.6e-204 714.5 580 61.2
MELO3C014531.2 Cucumis melo HOM05D005072 ORTHO05D006209 1.9e-203 713.0 598 62.0
A02p01460 Brassica napus HOM05D005072 ORTHO05D006209 5.6e-203 711.4 595 60.2
C02p05680 Brassica napus HOM05D005072 ORTHO05D006209 2.8e-202 709.1 595 60.0
MSTRG.12421 Avicennia marina HOM05D005072 ORTHO05D006209 2.4e-201 706.1 605 62.0
BraA02t05125Z Brassica rapa HOM05D005072 ORTHO05D006209 9.0e-201 704.1 603 59.4
Sp6g31350 Schrenkiella parvula HOM05D005072 ORTHO05D006209 9.0e-201 704.1 580 60.7
AL6G23090 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 1.2e-200 703.7 583 60.9
Lsat_1_v5_gn_2_36161 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-200 703.7 576 63.5
Thhalv10013024m.g Eutrema salsugineum HOM05D005072 ORTHO05D006209 2.6e-200 702.6 599 59.6
CSS0034993 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 3.4e-200 702.2 595 62.9
BolC2t06512H Brassica oleracea HOM05D005072 ORTHO05D006209 7.6e-200 701.0 603 58.9
Aa31LG3G14940 Aethionema arabicum HOM05D005072 ORTHO05D006209 2.9e-199 699.1 597 59.3
DCAR_023860 Daucus carota HOM05D005072 ORTHO05D006209 6.4e-199 698.0 516 66.7
A03p05510 Brassica napus HOM05D005072 ORTHO05D006209 7.1e-198 694.5 574 60.3
Carub.0006s1080 Capsella rubella HOM05D005072 ORTHO05D006209 7.1e-198 694.5 583 59.9
Peaxi162Scf00050g02225 Petunia axillaris HOM05D005072 ORTHO05D006209 3.3e-195 685.6 581 62.0
C03p06430 Brassica napus HOM05D005072 ORTHO05D006209 1.6e-194 683.3 572 59.8
EL10Ac4g10071 Beta vulgaris HOM05D005072 ORTHO05D006209 4.8e-194 681.8 601 57.9
BolC3t13149H Brassica oleracea HOM05D005072 ORTHO05D006209 4.8e-194 681.8 573 59.7
BraA03t09889Z Brassica rapa HOM05D005072 ORTHO05D006209 3.2e-190 669.1 521 62.8
CSS0024863 Camellia sinensis var. sinensis HOM05D005072 ORTHO05D006209 9.6e-187 657.5 568 61.8
Sed0004908 Sechium edule HOM05D005072 ORTHO05D006209 1.6e-181 640.2 555 60.0
SalBow3G4478 Salvia bowleyana HOM05D005072 ORTHO05D006209 1.9e-179 633.3 623 56.0
Ah.04g159570 Amaranthus hybridus HOM05D005072 ORTHO05D006209 5.9e-176 621.7 593 54.5
AT5G12290 Arabidopsis thaliana HOM05D005072 ORTHO05D006209 1.4e-174 617.1 508 61.4
BcaB01g05412 Brassica carinata HOM05D005072 ORTHO05D006209 1.9e-171 606.7 594 54.5
Sc06g0004780 Simmondsia chinensis HOM05D005072 ORTHO05D006209 2.5e-171 606.3 488 62.7
AUR62006578 Chenopodium quinoa HOM05D005072 ORTHO05D006209 4.7e-165 585.5 595 51.9
AUR62000232 Chenopodium quinoa HOM05D005072 ORTHO05D006209 9.7e-163 577.8 620 50.8
ATR0307G105 Amborella trichopoda HOM05D005072 ORTHO05D006209 5.3e-161 572.0 469 62.3
Actinidia38495 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.3e-154 550.8 356 77.0
Zm00001eb017230 Zea mays HOM05D005072 ORTHO05D006209 1.5e-147 527.3 543 50.8
unitig_27.g25017 Utricularia gibba HOM05D005072 ORTHO05D006209 5.2e-140 502.3 622 46.8
Duzib168G1271 Durio zibethinus HOM05D005072 ORTHO05D006209 8.0e-125 451.8 381 59.8
Pp3c22_1870 Physcomitrium patens HOM05D005072 ORTHO05D006209 2.2e-122 443.7 562 45.0
SMO147G0386 Selaginella moellendorffii HOM05D005072 ORTHO05D006209 7.0e-121 438.7 507 45.0
Mapoly0034s0093 Marchantia polymorpha HOM05D005072 ORTHO05D006209 2.8e-117 426.8 516 44.4
Os03g0377500 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 2.0e-115 420.6 445 50.3
HPP92_015601 Vanilla planifolia HOM05D005072 ORTHO05D006209 2.7e-112 410.2 300 68.0
Lj1C297T8 Lonicera japonica HOM05D005072 ORTHO05D006209 7.8e-112 408.7 332 60.8
Pp3c3_6740 Physcomitrium patens HOM05D005072 ORTHO05D006209 1.1e-110 404.8 550 41.8
Nn7g36972 Nelumbo nucifera HOM05D005072 ORTHO05D006209 3.5e-88 330.1 414 47.3
Actinidia29952 Actinidia chinensis HOM05D005072 ORTHO05D006209 1.6e-85 321.2 285 58.9
CDE07G0611 Ceratophyllum demersum HOM05D005072 ORTHO05D006209 3.6e-85 320.1 216 75.9
Glyma.14G037400 Glycine max HOM05D005072 ORTHO05D006209 1.5e-83 314.7 216 74.5
Aqoxy279s001 Aquilegia oxysepala HOM05D005072 ORTHO05D006209 3.8e-74 283.5 288 51.7
AagrBONN_evm.TU.Sc2ySwM_117.924 Anthoceros agrestis HOM05D005072 ORTHO05D006209 7.1e-73 279.3 373 37.8
CBR_g51661 Chara braunii HOM05D005072 ORTHO05D006209 5.6e-70 269.6 588 32.0
PGSC0003DMG403022702 Solanum tuberosum HOM05D005072 ORTHO05D006209 8.2e-69 265.8 180 76.7
Os03g0377300 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-66 258.5 345 40.3
Actinidia27132 Actinidia chinensis HOM05D005072 ORTHO05D006209 5.0e-50 203.4 169 61.5
SEGI_25760 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 5.0e-42 176.8 123 65.9
Lj1A297G59 Lonicera japonica HOM05D005072 ORTHO05D006209 4.4e-38 163.7 112 72.3
SEGI_30846 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 1.1e-36 159.1 112 74.1
ECA233G6112 Erigeron canadensis HOM05D005072 ORTHO05D006209 1.6e-35 155.2 271 38.7
Hma1.2p1_2592F.1_g325060 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 7.2e-33 146.4 103 68.9
Hma1.2p1_2592F.1_g325070 Hydrangea macrophylla HOM05D005072 ORTHO05D006209 6.1e-32 143.3 112 64.3
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 1.6e-24 118.6 99 54.5
AL340U10010 Arabidopsis lyrata HOM05D005072 ORTHO05D006209 2.7e-24 117.9 94 56.4
Cre14.g610351 Chlamydomonas reinhardtii HOM05D005072 ORTHO05D006209 6.1e-24 116.7 216 35.2
MCO07G292 Micromonas commoda HOM05D005072 ORTHO05D006209 1.0e-23 115.9 567 23.5
VMungo1127G1498 Vigna mungo HOM05D005072 ORTHO05D006209 2.6e-22 111.3 80 61.2
VMungo1215G1729 Vigna mungo HOM05D005072 ORTHO05D006209 4.4e-22 110.5 80 61.2
Os03g0356470 Oryza sativa ssp. japonica HOM05D005072 ORTHO05D006209 1.3e-21 109.0 152 35.5
VMungo1245G0001 Vigna mungo HOM05D005072 ORTHO05D006209 2.2e-21 108.2 83 57.8
Lsat_1_v5_gn_5_119240 Lactuca sativa HOM05D005072 ORTHO05D006209 6.3e-21 106.7 86 61.6
Nn001s41348 Nelumbo nucifera HOM05D005072 ORTHO05D006209 1.8e-20 105.1 74 70.3
SEGI_31829 Sequoiadendron giganteum HOM05D005072 ORTHO05D006209 2.7e-19 101.3 105 47.6
ECA248G3958 Erigeron canadensis HOM05D005072 ORTHO05D006209 2.3e-15 88.2 123 45.5
ECA233G4564 Erigeron canadensis HOM05D005072 ORTHO05D189103 4.4e-14 84.0 488 24.6
Cfa026272 Carpinus fangiana HOM05D005072 ORTHO05D126095 7.5e-14 83.2 334 25.7
arahy.Tifrunner.gnm1.ann1.ELE64U Arachis hypogaea HOM05D005072 ORTHO05D006209 1.3e-13 82.4 86 45.3
arahy.Tifrunner.gnm1.ann1.N4LM1Q Arachis hypogaea HOM05D005072 ORTHO05D007788 1.8e-12 78.6 58 69.0
Glyma.09G128251 Glycine max HOM05D005072 ORTHO05D006209 4.1e-12 77.4 94 45.7
Oeu032057.1 Olea europaea HOM05D005072 ORTHO05D006209 5.4e-12 77.0 168 38.7
Lsat_1_v5_gn_8_119321 Lactuca sativa HOM05D005072 ORTHO05D006209 6.6e-10 70.1 60 55.0
SMO025G0001 Selaginella moellendorffii HOM05D012532 ORTHO05D006209 1.1e-09 69.3 138 34.8
Lsat_1_v5_gn_4_56401 Lactuca sativa HOM05D005072 ORTHO05D006209 1.2e-08 65.9 50 60.0


User provided reference genes

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