Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0190221 Rosa chinensis HOM05D007169 ORTHO05D007243 5.0e-140 501.1 259 100.0
FAN04G2393 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.1e-113 412.1 269 79.6
FvH4_5g08300 Fragaria vesca HOM05D007169 ORTHO05D007243 1.3e-111 406.8 264 80.3
FAN18G0310 Fragaria x ananassa HOM05D007169 ORTHO05D007243 3.2e-110 402.1 270 78.5
Prupe.5G151300 Prunus persica HOM05D007169 ORTHO05D007243 6.6e-108 394.4 264 77.7
MD06G1142100 Malus domestica HOM05D007169 ORTHO05D007243 6.8e-97 357.8 275 68.0
MD14G1157400 Malus domestica HOM05D007169 ORTHO05D007243 4.4e-96 355.1 281 65.8
Glyma.06G170200 Glycine max HOM05D007169 ORTHO05D007243 4.4e-88 328.6 229 67.2
Lj1g0026378 Lotus japonicus HOM05D007169 ORTHO05D007243 4.2e-86 322.0 212 71.7
Ca_16044_v3 Cicer arietinum L. HOM05D007169 ORTHO05D007243 2.5e-83 312.8 218 69.3
Phvul.009G166500 Phaseolus vulgaris HOM05D007169 ORTHO05D007243 2.5e-83 312.8 216 67.6
CiPaw.12G042700 Carya illinoinensis HOM05D007169 ORTHO05D007243 4.8e-82 308.5 230 67.0
Medtr3g099350 Medicago truncatula HOM05D007169 ORTHO05D007243 4.8e-82 308.5 220 67.7
arahy.Tifrunner.gnm1.ann1.NVZ1RT Arachis hypogaea HOM05D007169 ORTHO05D007243 6.9e-81 304.7 218 66.1
arahy.Tifrunner.gnm1.ann1.ZT3MCZ Arachis hypogaea HOM05D007169 ORTHO05D007243 6.9e-81 304.7 218 66.1
CANSAT80G1416 Cannabis sativa HOM05D007169 ORTHO05D007243 5.8e-80 301.6 236 64.8
TPR.G14220 Trifolium pratense HOM05D007169 ORTHO05D007243 1.7e-79 300.1 223 63.2
Psat5g051240 Pisum sativum HOM05D007169 ORTHO05D007243 2.2e-79 299.7 224 64.3
QL10p002966 Quercus lobata HOM05D007169 ORTHO05D007243 7.1e-78 294.7 235 63.8
CsaV3_1G009620 Cucumis sativus L. HOM05D007169 ORTHO05D007243 7.9e-77 291.2 232 63.8
Manes.01G190300 Manihot esculenta HOM05D007169 ORTHO05D007243 7.9e-77 291.2 221 65.6
MELO3C002358.2 Cucumis melo HOM05D007169 ORTHO05D007243 1.3e-76 290.4 235 63.0
ClCG03G003730 Citrullus lanatus HOM05D007169 ORTHO05D007243 8.7e-76 287.7 233 63.1
Sed0023866 Sechium edule HOM05D007169 ORTHO05D007243 4.8e-74 282.0 237 62.4
Thecc.03G128900 Theobroma cacao HOM05D007169 ORTHO05D007243 8.1e-74 281.2 217 61.3
Duzib068G0521 Durio zibethinus HOM05D007169 ORTHO05D007243 1.8e-73 280.0 221 59.7
Potri.012G097500 Populus trichocarpa HOM05D007169 ORTHO05D007243 2.4e-73 279.6 219 63.5
Cpa.g.sc13.118 Carica papaya HOM05D007169 ORTHO05D007243 5.3e-73 278.5 232 59.9
Potri.015G096000 Populus trichocarpa HOM05D007169 ORTHO05D007243 5.3e-73 278.5 222 63.1
Sabra15G0116800 Salix brachista HOM05D007169 ORTHO05D007243 1.2e-72 277.3 222 62.6
Gohir.D09G247400 Gossypium hirsutum HOM05D007169 ORTHO05D007243 2.2e-71 273.1 223 58.3
Gorai.006G271900 Gossypium raimondii HOM05D007169 ORTHO05D007243 2.2e-71 273.1 223 58.3
Lalb_Chr08g0237141 Lupinus albus HOM05D007169 ORTHO05D007243 2.2e-71 273.1 239 57.3
Gohir.A09G246900 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.9e-70 270.0 220 58.2
Cfa018798 Carpinus fangiana HOM05D007169 ORTHO05D007243 3.0e-68 262.7 181 70.2
Ciclev10018838m.g Citrus clementina HOM05D003858 ORTHO05D005878 3.0e-68 262.7 230 57.8
Medtr2g045120 Medicago truncatula HOM05D007169 ORTHO05D007243 3.0e-68 262.7 175 70.3
Medtr2g445400 Medicago truncatula HOM05D007169 ORTHO05D007243 3.0e-68 262.7 175 70.3
Haze_07134 Corylus avellana HOM05D007169 ORTHO05D007243 8.7e-68 261.2 181 70.2
VMungo1309G2045 Vigna mungo HOM05D007169 ORTHO05D007243 8.7e-68 261.2 173 69.9
Atru.chr9.1127 Acer truncatum HOM05D007169 ORTHO05D007243 5.6e-67 258.5 231 56.7
TWI23G0849 Tripterygium wilfordii HOM05D007169 ORTHO05D007243 6.2e-66 255.0 226 59.3
Sed0005692 Sechium edule HOM05D007169 ORTHO05D007243 9.0e-65 251.1 227 57.3
AT5G50410 Arabidopsis thaliana HOM05D007169 ORTHO05D007243 5.8e-64 248.4 241 53.1
CANSAT80G0844 Cannabis sativa HOM05D007169 ORTHO05D007243 3.8e-63 245.7 158 73.4
Aa31LG3G6930 Aethionema arabicum HOM05D007169 ORTHO05D007243 1.9e-62 243.4 226 56.2
AL8G24630 Arabidopsis lyrata HOM05D007169 ORTHO05D007243 1.9e-62 243.4 241 52.3
Eucgr.K02727 Eucalyptus grandis HOM05D007169 ORTHO05D007243 3.2e-62 242.7 230 54.8
RhsimUnG0231000 Rhododendron simsii HOM05D007169 ORTHO05D007243 3.2e-62 242.7 214 51.9
Thhalv10014456m.g Eutrema salsugineum HOM05D007169 ORTHO05D007243 5.5e-62 241.9 242 51.7
Carub.0008s1052 Capsella rubella HOM05D007169 ORTHO05D007243 2.1e-61 240.0 241 51.9
Sp6g12560 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.8e-60 236.9 242 52.1
SpUn0015_0080 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.8e-60 236.9 242 52.1
SpUn0039_0020 Schrenkiella parvula HOM05D007169 ORTHO05D007243 1.8e-60 236.9 242 52.1
THA.LOC104803148 Tarenaya hassleriana HOM05D007169 ORTHO05D007243 8.7e-60 234.6 230 53.5
A02p12790 Brassica napus HOM05D007169 ORTHO05D007243 1.1e-59 234.2 230 51.7
BraA02t06336Z Brassica rapa HOM05D007169 ORTHO05D007243 1.1e-59 234.2 230 51.7
C02p20850 Brassica napus HOM05D007169 ORTHO05D007243 4.3e-59 232.3 230 51.7
BcaB05g24052 Brassica carinata HOM05D007169 ORTHO05D007243 9.7e-59 231.1 232 50.4
BcaC03g14651 Brassica carinata HOM05D007169 ORTHO05D007243 1.3e-58 230.7 230 51.3
BolC2t08225H Brassica oleracea HOM05D007169 ORTHO05D007243 1.3e-58 230.7 230 51.3
Gorai.004G276100 Gossypium raimondii HOM05D007169 ORTHO05D007243 1.6e-58 230.3 205 55.1
PGR044G0546 Punica granatum HOM05D007169 ORTHO05D007243 2.2e-58 229.9 231 51.1
FAN08G0105 Fragaria x ananassa HOM05D007169 ORTHO05D007243 1.1e-57 227.6 168 71.4
GSVIVG01008542001 Vitis vinifera HOM05D003858 ORTHO05D005878 7.7e-56 221.5 231 52.4
Lalb_Chr23g0273701 Lupinus albus HOM05D007169 ORTHO05D007243 1.1e-54 217.6 214 51.4
TAR374G1569 Trochodendron aralioides HOM05D007169 ORTHO05D007243 2.5e-54 216.5 245 45.7
Nn3g16473 Nelumbo nucifera HOM05D007169 ORTHO05D007243 3.6e-53 212.6 228 45.2
Lsat_1_v5_gn_1_28980 Lactuca sativa HOM05D007169 ORTHO05D007243 4.6e-53 212.2 217 47.0
Hma1.2p1_0014F.1_g009470 Hydrangea macrophylla HOM05D007169 ORTHO05D007243 6.1e-53 211.8 214 48.6
Dinv23144 Davidia involucrata HOM05D007169 ORTHO05D007243 7.9e-53 211.5 171 58.5
TAR371G0734 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.0e-52 211.1 216 47.2
Rhsim08G0190100 Rhododendron simsii HOM05D007169 ORTHO05D007243 5.1e-52 208.8 214 48.6
Gohir.D08G258666 Gossypium hirsutum HOM05D007169 ORTHO05D007243 1.1e-51 207.6 151 62.9
Gohir.D12G191801 Gossypium hirsutum HOM05D007169 ORTHO05D007243 9.7e-51 204.5 207 49.3
TAR622G0369 Trochodendron aralioides HOM05D007169 ORTHO05D007243 1.3e-50 204.1 166 57.8
HanXRQChr02g0034741 Helianthus annuus HOM05D007169 ORTHO05D007243 2.2e-50 203.4 219 46.1
Sc04g0000670 Simmondsia chinensis HOM05D007169 ORTHO05D007243 3.7e-50 202.6 225 49.3
Gorai.008G206100 Gossypium raimondii HOM05D007169 ORTHO05D007243 6.3e-50 201.8 207 48.3
DCAR_016391 Daucus carota HOM05D007169 ORTHO05D007243 6.9e-49 198.4 183 52.5
ECA247G3219 Erigeron canadensis HOM05D007169 ORTHO05D007243 6.5e-47 191.8 214 45.3
Actinidia18344 Actinidia chinensis HOM05D007169 ORTHO05D007243 1.6e-45 187.2 155 57.4
CARHR257950 Cardamine hirsuta HOM05D007169 ORTHO05D007243 3.0e-44 183.0 240 43.8
COL.COLO4_28120 Corchorus olitorius HOM05D007169 ORTHO05D007243 3.0e-44 183.0 230 43.9
DCAR_021617 Daucus carota HOM05D007169 ORTHO05D007243 3.9e-44 182.6 220 45.5
vmacro07808 Vaccinium macrocarpon HOM05D007169 ORTHO05D007243 1.3e-42 177.6 223 41.7
CSS0048648 Camellia sinensis var. sinensis HOM05D007169 ORTHO05D007243 2.2e-42 176.8 151 57.6
Lj5A96T48 Lonicera japonica HOM05D007169 ORTHO05D007243 1.2e-40 171.0 144 56.9
PSO478G3704 Papaver somniferum HOM05D007169 ORTHO05D007243 1.9e-38 163.7 156 51.3
HPP92_011766 Vanilla planifolia HOM05D007169 ORTHO05D007243 1.9e-38 163.7 230 40.4
AUR62029615 Chenopodium quinoa HOM05D007169 ORTHO05D007243 3.2e-38 162.9 152 55.3
Cc06_g22780 Coffea canephora HOM05D007169 ORTHO05D007243 4.2e-38 162.5 134 61.9
PSO017G4677 Papaver somniferum HOM05D007169 ORTHO05D007243 9.4e-38 161.4 178 46.1
Solyc03g112570.2 Solanum lycopersicum HOM05D007169 ORTHO05D007243 1.6e-37 160.6 148 56.8
Sopen03g031630 Solanum pennellii HOM05D007169 ORTHO05D007243 2.1e-37 160.2 148 56.8
PGSC0003DMG400018172 Solanum tuberosum HOM05D007169 ORTHO05D007243 6.1e-37 158.7 148 54.7
EL10Ac5g11418 Beta vulgaris HOM05D007169 ORTHO05D007243 1.0e-36 157.9 144 58.3
HPP92_011770 Vanilla planifolia HOM05D007169 ORTHO05D007243 3.0e-36 156.4 289 33.6
Oeu006492.1 Olea europaea HOM05D007169 ORTHO05D007243 3.9e-36 156.0 139 54.0
SalBow5G3517 Salvia bowleyana HOM05D007169 ORTHO05D007243 8.8e-36 154.8 138 52.2
SalBow5G4624 Salvia bowleyana HOM05D007169 ORTHO05D007243 1.1e-35 154.5 138 52.2
Aqoxy3G00802 Aquilegia oxysepala HOM05D007169 ORTHO05D007243 2.0e-35 153.7 218 39.9
Ah.02g111120 Amaranthus hybridus HOM05D007169 ORTHO05D007243 3.3e-35 152.9 145 57.9
Migut.I00155 Erythranthe guttata HOM05D007169 ORTHO05D007243 7.4e-35 151.8 139 50.4
MSTRG.11390 Avicennia marina HOM05D007169 ORTHO05D007243 9.7e-35 151.4 138 52.2
Peaxi162Scf00089g01624 Petunia axillaris HOM05D007169 ORTHO05D007243 1.3e-34 151.0 140 55.0
CAN.G338.2 Capsicum annuum HOM05D007169 ORTHO05D007243 1.7e-34 150.6 136 56.6
SGA_v2.0_scaffold56G20032 Striga asiatica HOM05D007169 ORTHO05D007243 6.3e-34 148.7 138 55.1
ATR0561G062 Amborella trichopoda HOM05D011398 ORTHO05D007243 1.2e-32 144.4 229 32.8
Os08g0531200 Oryza sativa ssp. japonica HOM05D011398 ORTHO05D007243 1.0e-31 141.4 235 36.6
Nitab4.5_0011992g0030 Nicotiana tabacum HOM05D007169 ORTHO05D007243 1.8e-28 130.6 143 47.6
Zm00001eb175120 Zea mays HOM05D011398 ORTHO05D007243 5.2e-28 129.0 158 43.0
unitig_0.g2530 Utricularia gibba HOM05D007169 ORTHO05D007243 1.5e-27 127.5 149 45.6
Hund26053 Selenicereus undatus HOM05D007169 ORTHO05D007243 1.4e-25 120.9 92 64.1
Sabra12G0071300 Salix brachista HOM05D000677 ORTHO05D000727 4.2e-22 109.4 130 46.9
SEGI_24222 Sequoiadendron giganteum HOM05D007169 ORTHO05D007243 1.6e-21 107.5 88 50.0
arahy.Tifrunner.gnm1.ann1.M1N3UH Arachis hypogaea HOM05D002218 ORTHO05D007243 4.0e-20 102.8 66 68.2
Mapoly0022s0039 Marchantia polymorpha HOM05D011398 ORTHO05D007243 4.0e-12 76.3 119 33.6
CBR_g30247 Chara braunii HOM05D011398 ORTHO05D007243 5.4e-09 65.9 118 33.1
CBR_g46730 Chara braunii HOM05D011398 ORTHO05D007243 2.7e-08 63.5 103 37.9
Pp3c9_18230 Physcomitrium patens HOM05D011398 ORTHO05D007243 2.3e-07 60.5 66 36.4
AagrBONN_evm.TU.Sc2ySwM_344.3697 Anthoceros agrestis HOM05D011398 ORTHO05D007243 7.3e-06 55.5 77 37.7


User provided reference genes

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