Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 1.4e-93 346.3 177 100.0
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.3e-86 323.2 179 92.7
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 1.7e-86 322.8 178 92.7
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.2e-86 322.4 179 92.2
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 2.2e-86 322.4 179 92.7
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 1.0e-75 287.0 174 83.9
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 8.0e-73 277.3 179 81.0
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 4.0e-72 275.0 176 82.4
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 2.1e-60 236.1 170 71.8
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.7e-60 235.7 175 71.4
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 1.7e-59 233.0 171 71.9
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 8.6e-59 230.7 163 74.8
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 8.6e-59 230.7 170 68.2
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 1.1e-58 230.3 164 73.8
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.6e-57 226.5 178 70.8
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.6e-57 226.5 170 69.4
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 2.8e-57 225.7 170 69.4
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 3.6e-57 225.3 170 66.5
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.2e-57 224.6 169 67.5
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 6.2e-57 224.6 167 69.5
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 8.1e-57 224.2 166 70.5
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 1.8e-56 223.0 168 70.8
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 4.0e-56 221.9 165 69.7
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.0e-56 221.9 168 70.2
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 5.2e-56 221.5 170 68.2
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 1.5e-55 219.9 167 70.1
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 2.6e-55 219.2 170 67.1
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 4.4e-55 218.4 168 68.5
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 5.8e-55 218.0 159 71.1
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.3e-54 216.9 163 68.7
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.2e-54 216.1 159 71.1
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.9e-54 215.7 163 69.3
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.9e-54 215.7 170 65.3
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 2.9e-54 215.7 170 65.3
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 4.9e-54 214.9 163 67.5
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 4.9e-54 214.9 176 64.8
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 4.9e-54 214.9 176 64.8
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 4.9e-54 214.9 158 70.9
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 6.4e-54 214.5 173 64.7
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 6.4e-54 214.5 163 69.9
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 2.4e-53 212.6 163 69.9
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-53 212.2 172 64.5
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 3.2e-53 212.2 172 64.5
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 3.2e-53 212.2 173 64.7
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 3.2e-53 212.2 173 65.9
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 4.1e-53 211.8 171 64.3
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 4.1e-53 211.8 158 69.6
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 9.2e-53 210.7 163 66.9
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 9.2e-53 210.7 161 67.1
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.2e-52 210.3 171 67.3
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.6e-52 209.9 176 63.6
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.6e-52 209.9 176 63.6
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.1e-52 209.5 171 63.7
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 2.7e-52 209.1 170 67.1
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 3.5e-52 208.8 168 64.3
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 3.5e-52 208.8 163 67.5
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 4.6e-52 208.4 159 66.7
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 1.0e-51 207.2 170 65.3
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 1.3e-51 206.8 157 66.9
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 1.3e-51 206.8 163 65.6
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 1.7e-51 206.5 174 63.2
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 1.7e-51 206.5 154 68.2
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 1.7e-51 206.5 163 65.0
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 2.3e-51 206.1 165 64.8
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 3.9e-51 205.3 170 62.9
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 6.6e-51 204.5 158 66.5
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 1.1e-50 203.8 166 62.7
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.5e-50 203.4 168 65.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 2.5e-50 202.6 161 64.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 4.3e-50 201.8 159 66.7
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 4.3e-50 201.8 143 70.6
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 5.6e-50 201.4 152 65.8
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 5.6e-50 201.4 152 65.8
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 5.6e-50 201.4 152 65.8
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 7.3e-50 201.1 163 65.0
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 1.2e-49 200.3 163 61.3
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 1.6e-49 199.9 163 63.8
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 1.6e-49 199.9 176 63.1
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 3.6e-49 198.7 169 59.2
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 6.2e-49 198.0 163 62.6
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 6.2e-49 198.0 178 61.2
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 6.2e-49 198.0 170 61.8
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 8.1e-49 197.6 178 60.1
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 1.4e-48 196.8 171 62.0
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 3.1e-48 195.7 170 61.8
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 8.9e-48 194.1 232 50.9
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.2e-47 193.7 142 72.5
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.2e-47 193.7 171 60.8
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 1.2e-47 193.7 163 62.0
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.0e-47 193.0 169 59.8
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 2.6e-47 192.6 159 63.5
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 5.8e-47 191.4 177 58.8
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 6.4e-46 188.0 206 52.4
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.4e-45 186.8 137 70.8
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 7.1e-45 184.5 150 62.7
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.6e-44 183.3 135 70.4
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 2.7e-44 182.6 134 72.4
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 4.6e-44 181.8 174 59.8
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 3.9e-43 178.7 160 61.9
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 2.8e-41 172.6 132 68.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 8.1e-41 171.0 153 63.4
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.4e-40 170.2 184 52.2
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.4e-40 169.5 109 76.1
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 5.3e-40 168.3 145 62.8
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 6.9e-40 167.9 148 57.4
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 4.4e-39 165.2 148 58.8
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 9.3e-37 157.5 133 63.9
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 4.6e-36 155.2 140 60.0
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 8.1e-33 144.4 126 60.3
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 4.0e-32 142.1 103 69.9
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 4.0e-32 142.1 134 59.7
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.5e-31 140.2 91 72.5
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 3.4e-31 139.0 90 75.6
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 4.2e-29 132.1 83 77.1
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 9.6e-26 120.9 111 58.6
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 6.2e-25 118.2 120 47.5
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 5.3e-24 115.2 74 74.3
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 4.5e-23 112.1 164 47.6
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 1.7e-22 110.2 125 51.2
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 2.2e-22 109.8 66 77.3
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 8.4e-22 107.8 113 55.8
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 7.1e-21 104.8 135 41.5
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 2.8e-17 92.8 55 78.2
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.7e-17 92.4 88 58.0
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 6.9e-16 88.2 54 79.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 3.4e-15 85.9 53 79.2
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.4e-14 81.3 73 65.8
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 8.4e-14 81.3 73 65.8
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 1.6e-12 77.0 58 63.8
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.7e-12 76.3 48 79.2
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 2.5e-10 69.7 85 31.8


User provided reference genes

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