Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.0e-300 1035.0 538 100.0
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 1.7e-262 909.1 536 89.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.4e-261 906.0 536 88.8
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.5e-260 901.0 535 88.0
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.1e-253 878.2 500 89.0
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 5.4e-237 824.3 529 81.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 1.0e-224 783.5 538 77.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.3e-219 765.8 540 73.5
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 6.2e-217 757.7 505 75.8
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 4.4e-199 698.4 504 69.6
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.1e-197 693.7 498 70.7
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 1.4e-197 693.3 505 70.1
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 5.6e-194 681.4 519 67.6
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 2.8e-193 679.1 503 68.2
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.1e-192 675.6 494 70.4
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.0e-191 672.9 512 66.4
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 2.2e-190 669.5 537 66.5
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 2.2e-190 669.5 496 66.9
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.8e-190 668.7 507 67.3
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 6.4e-190 667.9 511 66.5
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.4e-189 666.0 511 67.7
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 1.1e-186 657.1 533 63.6
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.9e-186 656.4 531 65.2
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.9e-186 656.4 527 63.2
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 9.6e-186 654.1 503 66.6
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.3e-185 653.7 524 64.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 3.6e-185 652.1 503 66.4
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.2e-185 651.4 505 65.5
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 6.9e-184 647.9 499 66.3
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 4.5e-183 645.2 471 70.5
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 6.4e-182 641.3 507 63.7
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 2.4e-181 639.4 583 58.0
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 2.1e-180 636.3 528 64.4
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.0e-180 634.8 501 64.9
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 7.9e-180 634.4 513 63.5
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 1.8e-179 633.3 500 64.6
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.0e-179 632.5 501 64.5
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.9e-179 632.1 529 62.2
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-178 630.2 500 64.4
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 2.8e-177 625.9 524 61.8
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.7e-177 625.5 317 98.4
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 8.1e-177 624.4 496 65.1
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 4.5e-175 618.6 502 64.3
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 1.0e-174 617.5 535 60.2
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.2e-174 616.3 469 65.2
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 2.2e-174 616.3 535 60.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 8.4e-174 614.4 501 64.5
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.1e-173 614.0 534 60.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.5e-173 611.7 539 58.3
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 7.1e-173 611.3 525 61.0
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 9.3e-173 610.9 501 64.1
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 1.6e-172 610.1 544 58.8
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 1.6e-172 610.1 539 58.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 4.6e-172 608.6 535 60.7
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 1.0e-171 607.4 514 61.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.8e-171 606.7 537 58.8
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.3e-171 606.3 501 63.7
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.3e-171 606.3 524 61.1
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.9e-170 603.2 539 58.3
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 5.3e-168 595.1 581 57.3
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 6.9e-168 594.7 532 58.8
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.6e-167 592.8 495 61.4
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.0e-166 590.9 437 68.2
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.9e-165 586.6 511 60.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 5.5e-165 585.1 498 61.4
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 7.1e-165 584.7 490 60.4
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 9.3e-165 584.3 542 58.7
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 5.7e-162 575.1 525 58.3
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.1e-160 570.9 575 55.8
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 1.8e-160 570.1 524 57.3
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.3e-160 568.5 493 61.3
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.4e-157 560.5 511 59.5
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.4e-155 553.9 497 57.5
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 2.3e-155 553.1 537 55.5
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 3.0e-155 552.7 538 55.6
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 5.1e-155 552.0 530 55.3
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 8.8e-155 551.2 530 54.5
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 8.8e-155 551.2 537 56.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.5e-154 550.4 534 55.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.5e-154 549.7 499 57.3
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 2.5e-154 549.7 497 56.7
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 7.4e-154 548.1 499 57.9
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 2.8e-153 546.2 499 57.7
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.1e-152 544.3 498 58.0
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.8e-152 543.5 519 55.5
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 4.5e-151 538.9 514 56.4
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 7.7e-151 538.1 501 56.9
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.2e-150 536.6 461 61.0
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 6.5e-150 535.0 501 56.5
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 7.2e-149 531.6 526 54.6
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.3e-147 526.6 349 69.1
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.3e-147 526.6 493 56.6
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.5e-146 523.9 496 55.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.4e-146 522.3 537 53.1
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.8e-145 519.6 472 56.8
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 6.3e-145 518.5 536 52.4
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 3.1e-144 516.2 510 55.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.2e-142 510.0 536 51.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.8e-142 509.2 509 56.2
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 1.5e-141 507.3 499 55.1
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 2.5e-141 506.5 521 53.2
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 2.5e-141 506.5 513 54.6
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.8e-139 500.4 341 68.6
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.5e-138 497.3 435 60.5
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 6.3e-137 491.9 512 53.1
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 2.0e-135 486.9 391 60.4
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.5e-133 480.7 499 52.3
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 1.9e-133 480.3 471 54.4
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 3.2e-133 479.6 535 49.3
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 8.0e-132 474.9 496 51.0
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 5.2e-131 472.2 554 49.3
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 5.7e-130 468.8 283 75.6
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.4e-128 464.2 322 68.0
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 5.4e-128 462.2 490 48.8
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.9e-126 456.4 503 51.7
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.9e-125 453.8 379 58.3
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.8e-123 447.2 318 65.4
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 2.3e-123 446.8 508 49.8
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 1.5e-122 444.1 469 52.2
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 7.5e-122 441.8 507 48.1
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 7.7e-119 431.8 469 52.2
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.8e-116 423.3 510 50.4
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.8e-112 410.6 411 52.3
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 8.6e-110 401.7 252 71.4
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 7.3e-109 398.7 487 45.4
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 1.2e-108 397.9 339 54.9
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.6e-108 397.5 345 53.6
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 3.6e-108 396.4 345 53.6
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 9.8e-106 388.3 328 56.4
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.3e-105 387.9 354 52.8
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 3.7e-105 386.3 527 42.1
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 2.4e-104 383.6 514 42.8
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 2.7e-103 380.2 515 42.7
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 2.7e-103 380.2 550 40.7
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 3.5e-103 379.8 515 42.7
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-103 378.6 530 42.5
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.7e-102 377.5 529 42.3
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.7e-102 377.5 451 47.7
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.3e-102 377.1 263 63.1
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 5.0e-102 375.9 531 41.6
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 5.0e-102 375.9 531 41.6
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 2.5e-101 373.6 540 40.6
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 2.5e-101 373.6 540 40.6
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 4.7e-100 369.4 563 38.7
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.1e-99 366.7 397 49.6
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 3.7e-97 359.8 283 56.5
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 3.5e-95 353.2 506 41.5
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 4.0e-91 339.7 414 49.3
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 2.2e-89 334.0 212 71.2
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 9.3e-80 302.0 186 73.1
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 1.7e-78 297.7 186 72.0
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 4.8e-76 289.7 284 48.2
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.6e-69 265.4 291 54.6
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 9.3e-64 248.8 326 48.5
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 7.9e-63 245.7 506 36.6
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.0e-49 199.9 289 44.6
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 1.1e-48 198.7 260 49.2
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 1.2e-47 195.3 148 62.2
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 4.3e-45 186.8 124 69.4
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.0e-42 177.9 511 31.3
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.1e-40 172.2 249 37.8
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 1.4e-40 171.8 548 29.9
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 2.3e-38 164.5 137 57.7
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.5e-34 151.8 83 84.3
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.1e-31 139.8 88 72.7
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 3.9e-30 137.1 82 76.8
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.8e-27 128.3 131 46.6
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 5.9e-26 123.2 67 83.6
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.5e-24 117.9 65 83.1
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 1.6e-23 115.2 93 58.1
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 2.7e-18 97.8 226 34.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.2e-17 94.7 226 35.0
SEGI_28594 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.4e-11 74.7 238 30.7
Ah.11g046900 Amaranthus hybridus HOM05D003971 ORTHO05D004762 1.6e-07 62.0 159 34.6


User provided reference genes

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