Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.0e-99 366.7 179 100.0
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.3e-91 339.7 179 91.6
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 2.3e-91 339.0 179 91.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.1e-91 337.8 179 91.6
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 8.6e-91 337.0 179 91.1
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 4.7e-89 331.3 179 88.8
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 3.3e-82 308.5 179 85.5
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.1e-80 303.5 179 82.7
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.0e-75 287.0 179 79.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 2.8e-65 252.3 187 70.1
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 4.8e-65 251.5 181 70.7
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 1.1e-64 250.4 181 70.7
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 2.4e-64 249.2 182 69.8
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 6.9e-64 247.7 182 70.3
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.2e-63 246.9 186 67.7
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 1.5e-63 246.5 181 69.1
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.5e-63 246.5 181 68.5
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 1.5e-63 246.5 183 69.9
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.0e-63 246.1 181 69.1
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.6e-63 245.7 190 65.8
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.8e-63 244.6 181 68.5
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 8.4e-62 240.7 185 68.1
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 1.1e-61 240.4 190 67.9
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 2.5e-61 239.2 186 68.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 5.5e-61 238.0 188 65.4
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 5.5e-61 238.0 187 66.8
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.3e-61 237.3 180 66.1
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 1.2e-60 236.9 181 68.0
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 2.7e-60 235.7 179 67.0
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.0e-60 234.6 185 67.0
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 6.0e-60 234.6 189 66.7
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 7.9e-60 234.2 187 64.7
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.0e-59 233.8 179 67.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 1.3e-59 233.4 179 65.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.3e-59 233.4 184 64.7
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 2.3e-59 232.6 189 62.4
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.3e-59 232.6 169 65.7
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 3.0e-59 232.3 185 64.3
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 5.1e-59 231.5 185 64.3
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 6.7e-59 231.1 197 62.9
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.5e-58 229.9 183 63.4
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-58 229.6 179 66.5
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 2.5e-58 229.2 188 64.4
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 4.3e-58 228.4 179 64.8
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 5.7e-58 228.0 184 64.7
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 7.4e-58 227.6 164 69.5
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 9.6e-58 227.3 179 64.8
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 9.6e-58 227.3 193 61.1
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.3e-57 226.9 184 62.0
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.6e-57 226.5 180 65.0
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 2.8e-57 225.7 225 56.4
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 2.8e-57 225.7 141 75.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.8e-57 225.7 181 65.2
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 4.8e-57 224.9 191 63.9
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 4.8e-57 224.9 223 57.4
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 4.8e-57 224.9 183 61.7
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 8.2e-57 224.2 186 63.4
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.1e-56 223.8 183 61.2
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 1.4e-56 223.4 189 60.8
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.4e-56 223.4 179 63.1
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 1.8e-56 223.0 179 64.2
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.0e-56 221.9 249 50.6
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 6.9e-56 221.1 199 57.8
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.0e-56 220.7 182 61.0
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 9.0e-56 220.7 161 67.7
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.0e-56 220.7 139 77.0
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.2e-55 220.3 137 73.7
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.2e-55 220.3 196 60.7
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 1.5e-55 219.9 194 58.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.0e-55 219.5 182 60.4
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.0e-55 219.5 179 61.5
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 2.0e-55 219.5 185 60.5
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.6e-55 219.2 185 62.2
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 2.6e-55 219.2 145 69.7
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.6e-55 219.2 190 61.6
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 4.5e-55 218.4 192 60.4
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 5.8e-55 218.0 182 59.9
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.6e-55 217.6 184 60.9
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-54 216.9 186 60.8
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.7e-54 216.5 179 63.7
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.9e-54 215.7 134 74.6
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 6.5e-54 214.5 186 60.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 8.4e-54 214.2 173 60.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 1.9e-53 213.0 170 65.9
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 5.5e-53 211.5 181 61.3
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 5.5e-53 211.5 181 58.6
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 9.3e-53 210.7 191 60.2
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 1.2e-52 210.3 163 65.0
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.6e-52 209.9 183 57.9
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.6e-52 209.9 186 57.5
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 2.1e-52 209.5 273 45.8
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 2.7e-52 209.1 184 60.3
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 3.5e-52 208.8 156 67.9
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 4.6e-52 208.4 163 65.0
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 4.6e-52 208.4 128 75.0
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.0e-51 207.2 173 60.1
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 1.0e-51 207.2 180 60.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 2.3e-51 206.1 189 57.1
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 2.3e-51 206.1 189 57.1
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 2.3e-51 206.1 172 61.0
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 2.3e-51 206.1 180 57.2
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.9e-51 205.3 183 56.8
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.9e-51 205.3 181 58.0
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 6.7e-51 204.5 186 57.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 1.5e-50 203.4 187 55.6
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 1.9e-50 203.0 189 57.1
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 1.9e-50 203.0 179 58.1
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 3.3e-50 202.2 204 54.9
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 4.3e-50 201.8 115 78.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 5.7e-50 201.4 195 54.4
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 9.7e-50 200.7 175 58.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 2.8e-49 199.1 190 56.3
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.8e-49 199.1 194 55.2
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.7e-49 198.7 160 66.2
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 4.8e-49 198.4 129 72.9
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.8e-48 196.4 190 54.2
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 9.0e-48 194.1 195 55.9
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.5e-47 193.4 184 56.0
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 3.8e-46 188.7 189 54.0
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 4.2e-45 185.3 160 62.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 3.0e-43 179.1 118 70.3
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 6.7e-43 177.9 114 69.3
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 3.3e-42 175.6 128 65.6
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 2.0e-39 166.4 125 57.6
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.0e-38 164.1 123 59.3
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.6e-36 155.6 124 56.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 3.9e-35 152.1 91 79.1
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 9.7e-34 147.5 87 74.7
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 2.0e-31 139.8 142 56.3
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 9.4e-29 131.0 132 50.0
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 2.7e-28 129.4 72 76.4
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.6e-28 129.0 133 57.9
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 3.6e-28 129.0 80 76.2
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 3.0e-27 125.9 76 71.1
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.6e-26 122.9 86 66.3
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.6e-23 113.6 116 44.8
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 2.0e-23 113.2 112 56.2
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 2.2e-22 109.8 72 63.9
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 9.4e-21 104.4 65 69.2
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.6e-20 102.4 102 44.1
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 3.0e-19 99.4 59 74.6
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.4e-16 89.7 85 61.2
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-08 64.3 35 77.1
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 4.1e-08 62.4 58 48.3


User provided reference genes

Program Settings