Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.5e-83 311.6 163 100.0
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.7e-62 240.7 169 75.7
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 6.5e-61 237.7 174 72.4
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.1e-60 236.9 176 71.6
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.5e-60 234.6 173 73.4
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.2e-60 234.2 173 75.1
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.3e-45 186.8 164 64.6
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 6.1e-43 177.9 168 61.9
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.2e-38 163.7 186 53.8
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.7e-35 152.5 156 53.8
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 8.0e-35 151.0 149 55.0
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 1.8e-34 149.8 145 53.1
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 3.0e-34 149.1 169 49.1
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.2e-33 147.1 140 55.7
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.5e-33 146.7 153 54.2
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 2.0e-33 146.4 164 59.8
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 4.4e-33 145.2 162 58.0
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 7.5e-33 144.4 163 57.7
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 9.8e-33 144.1 156 53.8
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.3e-32 143.7 147 55.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.8e-32 142.5 151 50.3
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 3.7e-32 142.1 155 58.1
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.7e-32 142.1 153 54.9
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 4.8e-32 141.7 168 48.2
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.1e-31 139.0 155 49.0
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 4.1e-31 138.7 148 54.1
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 5.4e-31 138.3 137 53.3
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.0e-30 136.3 154 49.4
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 7.7e-30 134.4 138 55.1
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.7e-29 133.3 124 54.8
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.7e-29 133.3 124 54.8
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.9e-29 132.5 124 57.3
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 2.9e-29 132.5 151 48.3
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.0e-29 131.7 163 56.4
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.6e-29 131.3 165 47.9
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.1e-28 130.6 153 48.4
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.1e-28 130.6 143 50.3
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.5e-28 129.4 165 45.5
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 3.3e-28 129.0 159 47.2
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.2e-28 128.6 151 46.4
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.1e-27 126.3 165 43.0
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.1e-27 126.3 146 50.0
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.6e-27 125.6 159 45.9
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 8.0e-27 124.4 141 46.1
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 8.0e-27 124.4 176 44.3
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.0e-26 122.5 139 49.6
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 8.9e-26 120.9 160 51.9
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.2e-25 120.6 142 46.5
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.2e-25 120.6 158 45.6
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 2.6e-25 119.4 157 45.2
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 3.4e-25 119.0 151 53.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 4.4e-25 118.6 157 45.2
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.7e-25 118.2 154 55.2
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 7.5e-25 117.9 166 44.6
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 9.8e-25 117.5 123 52.8
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.3e-24 117.1 148 45.3
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.3e-24 117.1 149 47.0
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 1.7e-24 116.7 149 47.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 3.7e-24 115.5 152 47.4
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.7e-24 115.5 152 45.4
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 4.9e-24 115.2 136 47.8
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.1e-23 114.0 162 45.7
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.8e-23 113.2 156 45.5
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.8e-23 113.2 115 54.8
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.4e-23 111.7 156 44.9
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 7.0e-23 111.3 153 44.4
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 7.0e-23 111.3 155 43.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 1.2e-22 110.5 144 44.4
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.2e-22 110.5 122 51.6
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 3.5e-22 109.0 138 43.5
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 5.9e-22 108.2 144 45.1
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 5.9e-22 108.2 151 41.1
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.0e-21 107.5 144 44.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-21 107.1 166 42.8
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.3e-21 106.3 173 40.5
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 5.0e-21 105.1 160 41.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 8.6e-21 104.4 161 42.9
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 8.6e-21 104.4 161 40.4
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.1e-20 104.0 142 39.4
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.9e-20 103.2 171 48.0
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 2.5e-20 102.8 91 57.1
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 5.6e-20 101.7 142 44.4
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 5.6e-20 101.7 163 41.7
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.6e-20 101.7 139 43.9
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 5.6e-20 101.7 166 39.8
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 7.3e-20 101.3 153 41.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 9.5e-20 100.9 141 44.0
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.2e-19 100.5 161 42.2
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 1.6e-19 100.1 141 44.0
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 3.6e-19 99.0 106 50.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.7e-19 98.6 155 40.0
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 8.0e-19 97.8 153 39.9
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 1.0e-18 97.4 120 40.8
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.0e-18 97.4 144 43.1
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-18 97.1 150 45.3
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 1.4e-18 97.1 150 45.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 1.8e-18 96.7 147 46.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.3e-18 96.3 98 54.1
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 2.3e-18 96.3 159 39.6
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 3.1e-18 95.9 149 40.3
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 6.8e-18 94.7 159 39.0
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 8.9e-18 94.4 161 37.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.5e-17 93.6 132 43.2
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 1.5e-17 93.6 161 37.3
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 1.5e-17 93.6 153 39.2
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 2.0e-17 93.2 161 37.3
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 2.0e-17 93.2 146 37.0
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 2.0e-17 93.2 162 38.9
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 3.4e-17 92.4 161 37.9
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 3.4e-17 92.4 151 37.7
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 4.4e-17 92.0 161 36.6
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 4.4e-17 92.0 161 36.6
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 5.8e-17 91.7 113 49.6
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 1.7e-16 90.1 160 38.8
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.2e-16 89.7 111 44.1
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.9e-16 89.4 129 37.2
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.9e-16 89.4 141 39.7
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 4.9e-16 88.6 160 35.6
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 4.9e-16 88.6 137 43.1
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 6.4e-16 88.2 160 38.1
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 1.1e-15 87.4 146 38.4
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 1.1e-15 87.4 146 38.4
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 1.1e-15 87.4 146 38.4
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 2.4e-15 86.3 146 39.7
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.2e-15 85.9 146 39.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.2e-15 85.9 146 39.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 3.2e-15 85.9 146 39.7
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 4.1e-15 85.5 144 38.9
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 5.4e-15 85.1 161 36.6
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 5.4e-15 85.1 121 42.1
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.0e-13 80.9 144 33.3
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 8.6e-13 77.8 66 59.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.5e-12 77.0 74 52.7
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 3.3e-12 75.9 139 34.5
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.7e-11 72.0 62 56.5
Medtr3g111950 Medicago truncatula HOM05D006278 ORTHO05D007526 1.4e-10 70.5 118 34.7
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 6.8e-10 68.2 146 32.2
TPR.G12310 Trifolium pratense HOM05D006278 ORTHO05D007526 1.2e-09 67.4 118 34.7
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.5e-09 67.0 134 32.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 7.5e-09 64.7 111 38.7
Ca_15506_v3 Cicer arietinum L. HOM05D006278 ORTHO05D007526 8.3e-08 61.2 107 35.5
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 1.1e-07 60.8 149 32.2
Nitab4.5_0000017g0170 Nicotiana tabacum HOM05D006278 ORTHO05D007526 1.4e-07 60.5 139 32.4
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 2.4e-07 59.7 141 27.7
Nitab4.5_0004768g0010 Nicotiana tabacum HOM05D006278 ORTHO05D007526 5.4e-07 58.5 133 33.1
Psat5g012120 Pisum sativum HOM05D006278 ORTHO05D007526 1.2e-06 57.4 106 34.0
ECA232G2514 Erigeron canadensis HOM05D006278 ORTHO05D007526 2.1e-06 56.6 131 32.1
VMungo0331G0961 Vigna mungo HOM05D004242 ORTHO05D004349 3.5e-06 55.8 81 35.8
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 3.5e-06 55.8 116 31.9
PGSC0003DMG400005375 Solanum tuberosum HOM05D006278 ORTHO05D007526 4.6e-06 55.5 142 28.9
THA.LOC104809215 Tarenaya hassleriana HOM05D006278 ORTHO05D007526 7.8e-06 54.7 145 29.0
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 7.8e-06 54.7 102 30.4


User provided reference genes

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