Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0187861 Rosa chinensis HOM05D007891 ORTHO05D009992 1.4e-28 129.0 68 100.0
Prupe.5G135300 Prunus persica HOM05D007891 ORTHO05D009992 5.7e-19 97.1 68 77.9
MD06G1124700 Malus domestica HOM05D007891 ORTHO05D009992 1.7e-18 95.5 66 75.8
MD00G1096700 Malus domestica HOM05D007891 ORTHO05D009992 4.8e-18 94.0 66 74.2
Gorai.003G073400 Gossypium raimondii HOM05D007891 ORTHO05D009992 5.5e-14 80.5 56 76.8
CANSAT21G1412 Cannabis sativa HOM05D007891 ORTHO05D009992 7.2e-14 80.1 56 76.8
Gohir.D03G088400 Gossypium hirsutum HOM05D007891 ORTHO05D009992 7.2e-14 80.1 56 76.8
Manes.01G000186 Manihot esculenta HOM05D007891 ORTHO05D009992 9.4e-14 79.7 57 77.2
Gohir.A02G095100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.2e-13 79.3 56 75.0
Ciclev10023227m.g Citrus clementina HOM05D007891 ORTHO05D009992 1.6e-13 79.0 65 69.2
Cfa011885 Carpinus fangiana HOM05D007891 ORTHO05D009992 2.1e-13 78.6 56 71.4
COL.COLO4_10847 Corchorus olitorius HOM05D007891 ORTHO05D009992 2.7e-13 78.2 56 73.2
Medtr2g016650 Medicago truncatula HOM05D007891 ORTHO05D009992 3.6e-13 77.8 50 82.0
Nn3g18767 Nelumbo nucifera HOM05D007891 ORTHO05D009992 3.6e-13 77.8 50 80.0
QL12p003189 Quercus lobata HOM05D007891 ORTHO05D009992 3.6e-13 77.8 48 81.2
Nn1g05266 Nelumbo nucifera HOM05D007891 ORTHO05D009992 6.1e-13 77.0 63 69.8
Potri.011G149400 Populus trichocarpa HOM05D007891 ORTHO05D009992 6.1e-13 77.0 57 73.7
Duzib205G0121 Durio zibethinus HOM05D007891 ORTHO05D009992 1.4e-12 75.9 52 69.2
Zm00001eb250770 Zea mays HOM05D007891 ORTHO05D009992 1.4e-12 75.9 57 70.2
Thecc.03G215400 Theobroma cacao HOM05D007891 ORTHO05D009992 1.8e-12 75.5 56 75.0
TWI15G0344 Tripterygium wilfordii HOM05D007891 ORTHO05D009992 2.3e-12 75.1 55 72.7
Ca_00459_v3 Cicer arietinum L. HOM05D007891 ORTHO05D009992 4.0e-12 74.3 50 76.0
Gorai.004G128000 Gossypium raimondii HOM05D007891 ORTHO05D009992 4.0e-12 74.3 56 71.4
PGR042G1189 Punica granatum HOM05D007891 ORTHO05D009992 4.0e-12 74.3 62 66.1
arahy.Tifrunner.gnm1.ann1.GMZ6HP Arachis hypogaea HOM05D007891 ORTHO05D009992 6.8e-12 73.6 50 74.0
Phvul.006G173900 Phaseolus vulgaris HOM05D007891 ORTHO05D009992 6.8e-12 73.6 56 69.6
Actinidia22232 Actinidia chinensis HOM05D007891 ORTHO05D009992 8.8e-12 73.2 60 66.7
TPR.G27295 Trifolium pratense HOM05D007891 ORTHO05D009992 1.2e-11 72.8 50 74.0
Gohir.D09G182100 Gossypium hirsutum HOM05D007891 ORTHO05D009992 1.5e-11 72.4 56 69.6
Gorai.006G204200 Gossypium raimondii HOM05D007891 ORTHO05D009992 1.5e-11 72.4 56 69.6
Gohir.D08G121300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.0e-11 72.0 56 69.6
Gohir.A09G187300 Gossypium hirsutum HOM05D007891 ORTHO05D009992 2.6e-11 71.6 56 69.6
Gohir.A08G108600 Gossypium hirsutum HOM05D007891 ORTHO05D009992 3.4e-11 71.2 56 67.9
Migut.A01060 Erythranthe guttata HOM05D007891 ORTHO05D009992 7.5e-11 70.1 59 69.5
Lj6g0010842 Lotus japonicus HOM05D007891 ORTHO05D009992 7.5e-11 70.1 57 64.9
ATR0579G034 Amborella trichopoda HOM05D007891 ORTHO05D009992 9.8e-11 69.7 47 72.3
Haze_09219 Corylus avellana HOM05D000010 ORTHO05D000063 9.8e-11 69.7 47 72.3
PSO063G6751 Papaver somniferum HOM05D007891 ORTHO05D009992 9.8e-11 69.7 62 66.1
Os04g0581700 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.7e-10 68.9 55 65.5
THA.LOC104806463 Tarenaya hassleriana HOM05D007891 ORTHO05D009992 2.2e-10 68.6 50 68.0
Zm00001eb072990 Zea mays HOM05D007891 ORTHO05D009992 2.2e-10 68.6 55 67.3
CSS0018813 Camellia sinensis var. sinensis HOM05D007891 ORTHO05D009992 3.7e-10 67.8 58 67.2
Os07g0469200 Oryza sativa ssp. japonica HOM05D007891 ORTHO05D009992 1.8e-09 65.5 61 63.9
AL1G47370 Arabidopsis lyrata HOM05D007891 ORTHO05D009992 4.1e-09 64.3 60 58.3
ClCG01G001300 Citrullus lanatus HOM05D007891 ORTHO05D009992 4.1e-09 64.3 45 68.9
Lalb_Chr20g0117551 Lupinus albus HOM05D007891 ORTHO05D009992 5.4e-09 63.9 58 62.1
AT1G33055 Arabidopsis thaliana HOM05D007891 ORTHO05D009992 9.1e-09 63.2 60 56.7
C05p32460 Brassica napus HOM05D007891 ORTHO05D009992 9.1e-09 63.2 60 56.7
BolC5t31978H Brassica oleracea HOM05D007891 ORTHO05D009992 9.1e-09 63.2 60 56.7
Eucgr.L00345 Eucalyptus grandis HOM05D007891 ORTHO05D009992 9.1e-09 63.2 47 66.0
A09p33310 Brassica napus HOM05D007891 ORTHO05D009992 2.0e-08 62.0 61 57.4
BraA09t38876Z Brassica rapa HOM05D007891 ORTHO05D009992 2.0e-08 62.0 61 57.4
BcaC05g27811 Brassica carinata HOM05D007891 ORTHO05D009992 3.5e-08 61.2 61 54.1
C05p38140 Brassica napus HOM05D007891 ORTHO05D009992 3.5e-08 61.2 61 54.1
Thhalv10009221m.g Eutrema salsugineum HOM05D007891 ORTHO05D009992 3.5e-08 61.2 60 53.3
A05p24400 Brassica napus HOM05D007891 ORTHO05D009992 4.5e-08 60.8 62 53.2
BraA05t21332Z Brassica rapa HOM05D007891 ORTHO05D009992 4.5e-08 60.8 62 53.2
Potri.001G452500 Populus trichocarpa HOM05D007891 ORTHO05D009992 5.9e-08 60.5 42 69.0
BcaB03g13704 Brassica carinata HOM05D007891 ORTHO05D009992 7.7e-08 60.1 60 53.3
CiPaw.11G108500 Carya illinoinensis HOM05D007891 ORTHO05D009992 7.7e-08 60.1 40 75.0
Carub.0001s3132 Capsella rubella HOM05D007891 ORTHO05D009992 1.0e-07 59.7 56 57.1
SalBow6G2331 Salvia bowleyana HOM05D007891 ORTHO05D009992 1.0e-07 59.7 53 62.3
CsaV3_5G001430 Cucumis sativus L. HOM05D007891 ORTHO05D009992 1.3e-07 59.3 45 62.2
HPP92_022259 Vanilla planifolia HOM05D007891 ORTHO05D009992 2.9e-07 58.2 47 66.0
C04p42520 Brassica napus HOM05D007891 ORTHO05D009992 5.0e-07 57.4 62 51.6
BcaC02g09428 Brassica carinata HOM05D007891 ORTHO05D009992 1.1e-06 56.2 62 50.0
Glyma.15G084900 Glycine max HOM05D007891 ORTHO05D009992 1.1e-06 56.2 45 68.9
Lalb_Chr15g0086271 Lupinus albus HOM05D007891 ORTHO05D009992 1.5e-06 55.8 39 71.8
Zm00001eb096350 Zea mays HOM05D007891 ORTHO05D009992 1.9e-06 55.5 51 60.8
Zm00001eb096380 Zea mays HOM05D007891 ORTHO05D009992 1.9e-06 55.5 51 60.8
BcaB04g17933 Brassica carinata HOM05D007891 ORTHO05D009992 2.5e-06 55.1 57 50.9
Sed0006175 Sechium edule HOM05D007891 ORTHO05D009992 3.3e-06 54.7 44 56.8
BolC4t25828H Brassica oleracea HOM05D007891 ORTHO05D009992 4.2e-06 54.3 62 50.0
Zm00001eb096410 Zea mays HOM05D007891 ORTHO05D009992 4.2e-06 54.3 51 58.8
Zm00001eb096420 Zea mays HOM05D007891 ORTHO05D009992 4.2e-06 54.3 51 58.8
Zm00001eb096470 Zea mays HOM05D007891 ORTHO05D009992 5.5e-06 53.9 51 58.8


User provided reference genes

Program Settings