Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0187191 Rosa chinensis HOM05D001207 ORTHO05D342632 9.0e-23 109.4 55 100.0
FvH4_1g01570 Fragaria vesca HOM05D000238 ORTHO05D009015 3.1e-07 57.8 28 100.0
FAN19G3000 Fragaria x ananassa HOM05D001207 ORTHO05D009015 3.1e-07 57.8 28 100.0
FAN23G1325 Fragaria x ananassa HOM05D001207 ORTHO05D009015 3.1e-07 57.8 28 100.0
FAN26G2247 Fragaria x ananassa HOM05D001207 ORTHO05D009015 3.1e-07 57.8 28 100.0
FAN28G1069 Fragaria x ananassa HOM05D000238 ORTHO05D009015 3.1e-07 57.8 28 100.0
RcHm_v2.0_Chr2g0086531 Rosa chinensis HOM05D001207 ORTHO05D009015 3.1e-07 57.8 28 100.0
ATR0629G027 Amborella trichopoda HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
BcaB04g18058 Brassica carinata HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
BcaC07g37674 Brassica carinata HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
A08p09620 Brassica napus HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
BolC8t48045H Brassica oleracea HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
BraA08t32959Z Brassica rapa HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
Carub.0007s3100 Capsella rubella HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
Thhalv10003444m.g Eutrema salsugineum HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
Glyma.09G096800 Glycine max HOM05D001207 ORTHO05D009015 1.2e-06 55.8 28 96.4
HPP92_003923 Vanilla planifolia HOM05D001207 ORTHO05D002396 1.2e-06 55.8 28 96.4
Cc06_g07370 Coffea canephora HOM05D001207 ORTHO05D009015 2.6e-06 54.7 28 92.9
CDE10G0689 Ceratophyllum demersum HOM05D001207 ORTHO05D009015 3.4e-06 54.3 28 92.9
Lj5g0002827 Lotus japonicus HOM05D001207 ORTHO05D009015 3.4e-06 54.3 28 92.9
Prupe.7G253500 Prunus persica HOM05D001207 ORTHO05D009015 3.4e-06 54.3 28 92.9
QL02p091447 Quercus lobata HOM05D001207 ORTHO05D009015 3.4e-06 54.3 28 92.9
Aqoxy7G02296 Aquilegia oxysepala HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
AL7G44010 Arabidopsis lyrata HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
CARHR217250 Cardamine hirsuta HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
CiPaw.16G117200 Carya illinoinensis HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
CsaV3_2G003460 Cucumis sativus L. HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 89.3
DCAR_019349 Daucus carota HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Dinv42907 Davidia involucrata HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Dinv43194 Davidia involucrata HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Glyma.15G203100 Glycine max HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Lalb_Chr23g0275791 Lupinus albus HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Manes.14G139700 Manihot esculenta HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Nn8g39732 Nelumbo nucifera HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Oeu040777.3 Olea europaea HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
PSO017G4960 Papaver somniferum HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Phvul.009G208900 Phaseolus vulgaris HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
Psat1g022840 Pisum sativum HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 89.3
TPR.G22801 Trifolium pratense HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 89.3
TAR636G2435 Trochodendron aralioides HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
VMungo1309G0472 Vigna mungo HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
GSVIVG01001035001 Vitis vinifera HOM05D001207 ORTHO05D009015 4.5e-06 53.9 28 92.9
CAN.G551.23 Capsicum annuum HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 89.3
ClCG11G003640 Citrullus lanatus HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 85.7
MELO3C004452.2 Cucumis melo HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 85.7
Peaxi162Scf00177g00814 Petunia axillaris HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 92.9
Solyc12g010380.3 Solanum lycopersicum HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 89.3
SGA_v2.0_scaffold183G39863 Striga asiatica HOM05D001207 ORTHO05D009015 5.9e-06 53.5 28 92.9
Atru.chr7.251 Acer truncatum HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
arahy.Tifrunner.gnm1.ann1.HFL4GJ Arachis hypogaea HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 92.9
arahy.Tifrunner.gnm1.ann1.TBA1JX Arachis hypogaea HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 92.9
CANSAT11G0601 Cannabis sativa HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Cfa020877 Carpinus fangiana HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Ciclev10007794m.g Citrus clementina HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
COL.COLO4_24082 Corchorus olitorius HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Haze_19308 Corylus avellana HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Duzib168G0412 Durio zibethinus HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Gohir.A06G048800 Gossypium hirsutum HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Gohir.D06G048500 Gossypium hirsutum HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Gorai.010G054600 Gossypium raimondii HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
PGR142G3550 Punica granatum HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
Sed0001389 Sechium edule HOM05D001207 ORTHO05D009015 7.7e-06 53.1 27 92.6
Thecc.09G142600 Theobroma cacao HOM05D001207 ORTHO05D009015 7.7e-06 53.1 28 89.3
MD02G1012500 Malus domestica HOM05D001207 ORTHO05D009015 1.0e-05 52.8 28 89.3
Medtr2g461290 Medicago truncatula HOM05D001207 ORTHO05D009015 1.0e-05 52.8 28 85.7
TWI34G1792 Tripterygium wilfordii HOM05D001207 ORTHO05D009015 1.0e-05 52.8 28 85.7


User provided reference genes

Program Settings