Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0186801 Rosa chinensis HOM05D006904 ORTHO05D008439 2.2e-166 589.0 316 100.0
FAN04G1837 Fragaria x ananassa HOM05D006904 ORTHO05D008439 2.5e-141 505.8 313 87.5
FAN18G2239 Fragaria x ananassa HOM05D006904 ORTHO05D008439 1.0e-139 500.4 314 87.6
FvH4_5g11010 Fragaria vesca HOM05D006904 ORTHO05D008439 1.4e-139 500.0 314 87.3
FAN13G1638 Fragaria x ananassa HOM05D006904 ORTHO05D008439 5.2e-139 498.0 314 86.3
MD06G1117600 Malus domestica HOM05D006904 ORTHO05D008439 5.4e-112 408.3 327 70.9
Prupe.5G128700 Prunus persica HOM05D006904 ORTHO05D008439 2.0e-111 406.4 320 71.2
MD14G1125000 Malus domestica HOM05D006904 ORTHO05D008439 1.5e-109 400.2 322 71.1
Cfa011933 Carpinus fangiana HOM05D006904 ORTHO05D008439 1.7e-94 350.1 318 64.8
Haze_09157 Corylus avellana HOM05D006904 ORTHO05D008439 1.7e-94 350.1 311 65.3
Haze_09163 Corylus avellana HOM05D006904 ORTHO05D008439 6.6e-94 348.2 313 64.9
Ciclev10021179m.g Citrus clementina HOM05D006904 ORTHO05D008439 3.2e-88 329.3 296 59.8
COL.COLO4_10787 Corchorus olitorius HOM05D006904 ORTHO05D008439 9.3e-88 327.8 315 58.7
QL02p029228 Quercus lobata HOM05D006904 ORTHO05D008439 1.2e-87 327.4 314 62.1
Potri.001G084500 Populus trichocarpa HOM05D006904 ORTHO05D008439 6.0e-87 325.1 323 58.5
vmacro11509 Vaccinium macrocarpon HOM05D006904 ORTHO05D008439 8.7e-86 321.2 288 62.8
CAN.G567.78 Capsicum annuum HOM05D006904 ORTHO05D008439 3.3e-85 319.3 286 62.2
Gohir.D12G240700 Gossypium hirsutum HOM05D006904 ORTHO05D008439 3.3e-85 319.3 280 62.1
Gorai.008G257800 Gossypium raimondii HOM05D006904 ORTHO05D008439 3.3e-85 319.3 280 62.1
Nitab4.5_0004251g0070 Nicotiana tabacum HOM05D006904 ORTHO05D008439 3.3e-85 319.3 320 57.5
Sopen08g031220 Solanum pennellii HOM05D006904 ORTHO05D008439 9.6e-85 317.8 311 59.5
Solyc08g083010.3 Solanum lycopersicum HOM05D006904 ORTHO05D008439 1.3e-84 317.4 309 59.5
Thecc.03G222200 Theobroma cacao HOM05D006904 ORTHO05D008439 2.8e-84 316.2 318 57.5
TAR629G0561 Trochodendron aralioides HOM05D006904 ORTHO05D008439 2.8e-84 316.2 309 58.6
Dinv02287 Davidia involucrata HOM05D006904 ORTHO05D008439 3.6e-84 315.8 333 57.4
Rhsim02G0251400 Rhododendron simsii HOM05D006904 ORTHO05D008439 4.8e-84 315.5 268 65.7
Gohir.A12G239500 Gossypium hirsutum HOM05D006904 ORTHO05D008439 1.1e-83 314.3 310 57.7
MSTRG.24864 Avicennia marina HOM05D006904 ORTHO05D008439 5.3e-83 312.0 304 59.5
PGSC0003DMG400012243 Solanum tuberosum HOM05D006904 ORTHO05D008439 5.3e-83 312.0 264 65.5
Atru.chr9.1900 Acer truncatum HOM05D006904 ORTHO05D008439 1.5e-82 310.5 249 69.9
Aqoxy5G04256 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 2.0e-82 310.1 272 64.0
Oeu010740.1 Olea europaea HOM05D006904 ORTHO05D008439 2.0e-82 310.1 247 66.4
Sabra01G0061300 Salix brachista HOM05D006904 ORTHO05D008439 1.7e-81 307.0 321 55.1
MBI04_g44912_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 3.8e-81 305.8 289 59.9
TWI81G0826 Tripterygium wilfordii HOM05D006904 ORTHO05D008439 7.1e-80 301.6 313 54.6
Lj8A201G80 Lonicera japonica HOM05D006904 ORTHO05D008439 1.2e-79 300.8 250 66.8
arahy.Tifrunner.gnm1.ann1.U3Q9D7 Arachis hypogaea HOM05D006904 ORTHO05D008439 2.1e-79 300.1 262 63.7
GSVIVG01019640001 Vitis vinifera HOM05D006904 ORTHO05D008439 1.3e-78 297.4 316 55.7
Nitab4.5_0007063g0060 Nicotiana tabacum HOM05D006904 ORTHO05D008439 3.9e-78 295.8 321 55.5
EL10Ac5g12440 Beta vulgaris HOM05D006904 ORTHO05D008439 6.6e-78 295.0 313 54.3
THA.LOC104813055 Tarenaya hassleriana HOM05D006904 ORTHO05D008439 6.6e-78 295.0 310 56.1
Actinidia04169 Actinidia chinensis HOM05D006904 ORTHO05D008439 3.3e-77 292.7 308 55.5
ClCG10G000840 Citrullus lanatus HOM05D006904 ORTHO05D008439 3.3e-77 292.7 309 55.3
Ah.12g053150 Amaranthus hybridus HOM05D006904 ORTHO05D008439 5.6e-77 292.0 315 55.9
arahy.Tifrunner.gnm1.ann1.NJ37M5 Arachis hypogaea HOM05D006904 ORTHO05D008439 5.6e-77 292.0 278 60.4
PSO675G2501 Papaver somniferum HOM05D006904 ORTHO05D008439 5.6e-77 292.0 272 58.8
Thhalv10025762m.g Eutrema salsugineum HOM05D006904 ORTHO05D008439 7.3e-77 291.6 264 61.7
BcaC09g50912 Brassica carinata HOM05D006904 ORTHO05D008439 1.3e-76 290.8 259 61.4
A01p15360 Brassica napus HOM05D000458 ORTHO05D000951 1.3e-76 290.8 259 61.4
C01p19310 Brassica napus HOM05D000458 ORTHO05D000951 1.3e-76 290.8 259 61.4
BolC1t01857H Brassica oleracea HOM05D000458 ORTHO05D000951 1.3e-76 290.8 259 61.4
Ca_13963_v3 Cicer arietinum L. HOM05D006904 ORTHO05D008439 1.3e-76 290.8 292 57.9
Lj2g0027548 Lotus japonicus HOM05D006904 ORTHO05D008439 1.6e-76 290.4 275 58.9
BcaNung01113 Brassica carinata HOM05D006904 ORTHO05D008439 2.1e-76 290.0 279 58.8
BraA01t01480Z Brassica rapa HOM05D006904 ORTHO05D008439 2.1e-76 290.0 259 61.4
Glyma.09G286200 Glycine max HOM05D006904 ORTHO05D008439 2.8e-76 289.7 286 57.0
MBI04_g21743_MAGBIO Magnolia biondii HOM05D006904 ORTHO05D008439 4.8e-76 288.9 252 62.3
Peaxi162Scf00074g00356 Petunia axillaris HOM05D006904 ORTHO05D008439 6.2e-76 288.5 259 61.4
CSS0028351 Camellia sinensis var. sinensis HOM05D006904 ORTHO05D008439 2.4e-75 286.6 292 56.2
Migut.A01096 Erythranthe guttata HOM05D006904 ORTHO05D008439 5.3e-75 285.4 306 55.2
HanXRQChr07g0192161 Helianthus annuus HOM05D006904 ORTHO05D008439 6.9e-75 285.0 309 53.1
AL7G29200 Arabidopsis lyrata HOM05D006904 ORTHO05D008439 1.5e-74 283.9 268 59.7
AT4G24090 Arabidopsis thaliana HOM05D006904 ORTHO05D008439 2.0e-74 283.5 255 60.4
Hma1.2p1_0456F.1_g156570 Hydrangea macrophylla HOM05D006904 ORTHO05D008439 3.4e-74 282.7 253 62.5
Medtr3g005290 Medicago truncatula HOM05D006904 ORTHO05D008439 4.5e-74 282.3 271 56.8
Aa31LG6G7300 Aethionema arabicum HOM05D006904 ORTHO05D008439 7.6e-74 281.6 278 57.2
CiPaw.12G078200 Carya illinoinensis HOM05D006904 ORTHO05D008439 7.6e-74 281.6 306 54.6
ECA233G3570 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.7e-73 280.4 251 61.8
PSO541G0496 Papaver somniferum HOM05D006904 ORTHO05D008439 3.8e-73 279.3 306 52.0
Carub.0007s1701 Capsella rubella HOM05D006904 ORTHO05D008439 8.4e-73 278.1 268 57.5
Psat1g000400 Pisum sativum HOM05D006904 ORTHO05D008439 8.4e-73 278.1 292 54.5
Duzib205G0314 Durio zibethinus HOM05D006904 ORTHO05D008439 1.1e-72 277.7 284 57.0
Phvul.002G333700 Phaseolus vulgaris HOM05D006904 ORTHO05D008439 7.1e-72 275.0 261 57.5
Sc01g0010610 Simmondsia chinensis HOM05D006904 ORTHO05D008439 9.3e-72 274.6 300 55.3
Cc08_g16680 Coffea canephora HOM05D006904 ORTHO05D008439 4.6e-71 272.3 277 56.0
AUR62007044 Chenopodium quinoa HOM05D006904 ORTHO05D008439 7.9e-71 271.6 284 53.5
VMungo1309G0432 Vigna mungo HOM05D006904 ORTHO05D008439 2.3e-70 270.0 261 57.5
Sp7g22050 Schrenkiella parvula HOM05D006904 ORTHO05D008439 1.9e-69 266.9 259 58.3
TPR.G25509 Trifolium pratense HOM05D006904 ORTHO05D008439 1.9e-69 266.9 257 56.4
SGA_v2.0_scaffold104G30265 Striga asiatica HOM05D006904 ORTHO05D008439 7.4e-69 265.0 262 57.6
Eucgr.E01035 Eucalyptus grandis HOM05D006904 ORTHO05D008439 8.1e-68 261.5 277 53.1
CANSAT21G0222 Cannabis sativa HOM05D006904 ORTHO05D008439 1.8e-67 260.4 297 51.9
Lsat_1_v5_gn_6_9180 Lactuca sativa HOM05D000482 ORTHO05D000349 1.5e-66 257.3 243 58.0
CsaV3_3G000910 Cucumis sativus L. HOM05D006904 ORTHO05D008439 7.6e-66 255.0 281 53.7
ATR0620G017 Amborella trichopoda HOM05D006904 ORTHO05D008439 1.3e-65 254.2 281 50.2
MELO3C013778.2 Cucumis melo HOM05D006904 ORTHO05D008439 1.7e-65 253.8 281 53.0
CDE09G0165 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 6.5e-65 251.9 256 57.0
Hund11354 Selenicereus undatus HOM05D006904 ORTHO05D008439 8.4e-65 251.5 305 49.5
Haze_16434 Corylus avellana HOM05D006904 ORTHO05D008439 1.2e-63 247.7 250 58.8
CDE11G0025 Ceratophyllum demersum HOM05D006904 ORTHO05D008439 2.7e-63 246.5 309 49.8
DCAR_006536 Daucus carota HOM05D006904 ORTHO05D008439 2.5e-61 240.0 246 55.7
PGR042G3610 Punica granatum HOM05D006904 ORTHO05D008439 3.7e-60 236.1 275 52.4
Sed0025618 Sechium edule HOM05D006904 ORTHO05D008439 9.0e-59 231.5 235 55.7
SalBow8G2695 Salvia bowleyana HOM05D006904 ORTHO05D008439 1.5e-58 230.7 277 50.2
Haze_14079 Corylus avellana HOM05D006904 ORTHO05D008439 1.0e-57 228.0 287 51.2
unitig_88.g27646 Utricularia gibba HOM05D006904 ORTHO05D008439 5.1e-54 215.7 297 46.5
AUR62019908 Chenopodium quinoa HOM05D006904 ORTHO05D008439 4.3e-53 212.6 260 46.9
HPP92_025869 Vanilla planifolia HOM05D006904 ORTHO05D008439 4.5e-50 202.6 288 45.5
Os09g0529350 Oryza sativa ssp. japonica HOM05D006904 ORTHO05D008439 1.2e-47 194.5 194 54.1
Manes.02G003600 Manihot esculenta HOM05D006904 ORTHO05D008439 2.1e-47 193.7 228 53.1
CARHR231490 Cardamine hirsuta HOM05D006904 ORTHO05D008439 4.6e-47 192.6 184 56.0
Zm00001eb319140 Zea mays HOM05D006904 ORTHO05D008439 5.1e-46 189.1 248 46.0
SEGI_29366 Sequoiadendron giganteum HOM05D006904 ORTHO05D008439 1.6e-39 167.5 250 41.2
Cpa.g.sc175.18 Carica papaya HOM05D006904 ORTHO05D008439 2.7e-39 166.8 200 54.5
ECA246G4131 Erigeron canadensis HOM05D006904 ORTHO05D008439 1.1e-37 161.4 234 42.7
Aqoxy5G04252 Aquilegia oxysepala HOM05D006904 ORTHO05D008439 1.7e-36 157.5 161 58.4
Lsat_1_v5_gn_3_13720 Lactuca sativa HOM05D006904 ORTHO05D008439 2.2e-36 157.1 227 43.2
HanXRQChr06g0166841 Helianthus annuus HOM05D006904 ORTHO05D008439 3.5e-34 149.8 287 36.6
Pp3c9_20020 Physcomitrium patens HOM05D006904 ORTHO05D008439 2.5e-32 143.7 272 36.4
Nn5g30646 Nelumbo nucifera HOM05D006904 ORTHO05D008439 7.4e-29 132.1 113 61.9
Mapoly0033s0090 Marchantia polymorpha HOM05D006904 ORTHO05D008439 6.5e-25 119.0 349 32.7
AagrBONN_evm.TU.Sc2ySwM_228.3172 Anthoceros agrestis HOM05D006904 ORTHO05D008439 1.0e-22 111.7 293 32.4
SMO361G0353 Selaginella moellendorffii HOM05D006904 ORTHO05D008439 2.4e-19 100.5 142 38.7
MCO05G331 Micromonas commoda HOM05D006904 ORTHO05D008439 4.1e-19 99.8 245 33.5
BcaC09g50913 Brassica carinata HOM05D006904 ORTHO05D008439 5.4e-19 99.4 81 66.7
CBR_g70738 Chara braunii HOM05D006904 ORTHO05D008439 4.5e-18 96.3 235 31.9
QL02p029244 Quercus lobata HOM05D006904 ORTHO05D008439 3.8e-17 93.2 136 44.9
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 2.2e-12 77.4 58 60.3
Cre02.g144850 Chlamydomonas reinhardtii HOM05D006904 ORTHO05D008439 4.1e-11 73.2 249 29.7
Aa31LG6G7320 Aethionema arabicum HOM05D003846 ORTHO05D004726 1.9e-08 64.3 146 37.7


User provided reference genes

Program Settings