Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0186161 Rosa chinensis HOM05D005777 ORTHO05D006854 0.0e+00 1310.0 713 100.0
FvH4_5g11630 Fragaria vesca HOM05D005777 ORTHO05D006854 0.0e+00 1102.0 714 85.7
FAN04G0792 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.3e-286 986.9 714 78.9
FAN13G2465 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.0e-271 939.1 714 72.8
Prupe.5G124500 Prunus persica HOM05D005777 ORTHO05D006854 2.2e-222 776.2 714 60.9
FAN18G2480 Fragaria x ananassa HOM05D005777 ORTHO05D006854 2.2e-177 626.7 550 69.3
FAN08G0729 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.6e-166 588.6 510 70.8
Cfa011969 Carpinus fangiana HOM05D005777 ORTHO05D006854 4.0e-155 552.7 733 49.1
MD06G1111700 Malus domestica HOM05D005777 ORTHO05D006854 3.9e-150 536.2 723 47.7
Haze_09107 Corylus avellana HOM05D005777 ORTHO05D006854 1.1e-144 518.1 726 47.1
QL02p029612 Quercus lobata HOM05D005777 ORTHO05D006854 3.5e-143 513.1 724 46.0
Nitab4.5_0002793g0030 Nicotiana tabacum HOM05D005777 ORTHO05D006854 5.6e-117 426.0 529 45.7
Nitab4.5_0002367g0090 Nicotiana tabacum HOM05D005777 ORTHO05D006854 9.0e-115 418.7 720 38.9
Sabra07G0049700 Salix brachista HOM05D005777 ORTHO05D006854 1.1e-112 411.8 806 38.8
Lj8C204T6 Lonicera japonica HOM05D005777 ORTHO05D006854 2.1e-111 407.5 484 47.5
vmacro13879 Vaccinium macrocarpon HOM05D005777 ORTHO05D006854 5.8e-106 389.4 618 42.6
FAN18G2579 Fragaria x ananassa HOM05D005777 ORTHO05D006854 6.5e-105 386.0 228 84.6
Atru.chr9.1942 Acer truncatum HOM05D005777 ORTHO05D006854 3.5e-103 380.2 403 54.1
TWI60G0567 Tripterygium wilfordii HOM05D005777 ORTHO05D006854 7.4e-101 372.5 406 51.7
Lalb_Chr05g0223951 Lupinus albus HOM05D005777 ORTHO05D006854 9.3e-96 355.5 412 49.0
Glyma.08G025000 Glycine max HOM05D005777 ORTHO05D006854 1.3e-94 351.7 375 52.3
CANSAT21G0853 Cannabis sativa HOM05D005777 ORTHO05D006854 3.9e-94 350.1 414 47.1
Lj4g0026879 Lotus japonicus HOM05D005777 ORTHO05D006854 1.7e-92 344.7 394 51.8
Aqoxy5G04312 Aquilegia oxysepala HOM05D005777 ORTHO05D006854 6.3e-92 342.8 537 42.1
Psat7g024000 Pisum sativum HOM05D005777 ORTHO05D006854 6.3e-92 342.8 383 51.4
Glyma.05G218900 Glycine max HOM05D005777 ORTHO05D006854 1.4e-91 341.7 371 51.5
Medtr8g099725 Medicago truncatula HOM05D005777 ORTHO05D006854 1.4e-91 341.7 382 51.8
Phvul.002G300700 Phaseolus vulgaris HOM05D005777 ORTHO05D006854 3.8e-89 333.6 385 49.1
CSS0003604 Camellia sinensis var. sinensis HOM05D005777 ORTHO05D006854 1.1e-88 332.0 467 44.3
Potri.007G058050 Populus trichocarpa HOM05D005777 ORTHO05D006854 3.2e-88 330.5 730 36.7
CsaV3_5G001940 Cucumis sativus L. HOM05D005777 ORTHO05D006854 2.7e-87 327.4 716 34.4
Rhsim07G0080700 Rhododendron simsii HOM05D005777 ORTHO05D006854 5.7e-85 319.7 503 41.9
Eucgr.E00747 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.1e-83 315.5 373 46.9
PGR042G2859 Punica granatum HOM05D005777 ORTHO05D006854 5.3e-83 313.2 371 48.8
MELO3C033830.2 Cucumis melo HOM05D005777 ORTHO05D006854 6.9e-83 312.8 351 50.1
Cpa.g.sc79.3 Carica papaya HOM05D005777 ORTHO05D006854 1.5e-82 311.6 390 49.5
Sed0007946 Sechium edule HOM05D005777 ORTHO05D006854 6.5e-81 306.2 382 46.6
Eucgr.E00956 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.5e-80 304.3 373 45.8
Eucgr.E00744 Eucalyptus grandis HOM05D005777 ORTHO05D006854 7.2e-80 302.8 373 46.1
Thecc.08G166000 Theobroma cacao HOM05D005777 ORTHO05D006854 2.6e-77 294.3 620 34.8
Lsat_1_v5_gn_6_83361 Lactuca sativa HOM05D005777 ORTHO05D006854 3.3e-77 293.9 358 49.2
HanXRQChr03g0083721 Helianthus annuus HOM05D005777 ORTHO05D006854 1.3e-76 292.0 354 48.3
TPR.G3378 Trifolium pratense HOM05D005777 ORTHO05D006854 1.3e-76 292.0 451 43.2
ECA240G0322 Erigeron canadensis HOM05D005777 ORTHO05D006854 8.2e-76 289.3 365 47.7
Peaxi162Scf00074g00526 Petunia axillaris HOM05D005777 ORTHO05D006854 5.3e-75 286.6 355 47.6
Sopen08g030950 Solanum pennellii HOM05D005777 ORTHO05D006854 1.3e-73 282.0 382 44.2
Solyc08g082720.4 Solanum lycopersicum HOM05D005777 ORTHO05D006854 2.2e-73 281.2 382 44.5
PGSC0003DMG400012134 Solanum tuberosum HOM05D005777 ORTHO05D006854 7.2e-72 276.2 386 44.0
TAR629G1222 Trochodendron aralioides HOM05D005777 ORTHO05D006854 1.2e-71 275.4 708 38.3
CiPaw.11G117200 Carya illinoinensis HOM05D005777 ORTHO05D006854 1.5e-69 268.5 727 32.3
CAN.G567.32 Capsicum annuum HOM05D005777 ORTHO05D006854 4.4e-69 266.9 352 45.2
Manes.01G049500 Manihot esculenta HOM05D005777 ORTHO05D006854 6.3e-68 263.1 284 53.2
MBI07_g24771_MAGBIO Magnolia biondii HOM05D005777 ORTHO05D006854 2.0e-66 258.1 739 30.4
Nn1g00296 Nelumbo nucifera HOM05D005777 ORTHO05D006854 8.5e-65 252.7 630 32.2
Cc08_g16390 Coffea canephora HOM05D005777 ORTHO05D006854 3.2e-64 250.8 306 49.0
DCAR_006511 Daucus carota HOM05D005777 ORTHO05D006854 3.2e-64 250.8 300 46.3
Ca_17460_v3 Cicer arietinum L. HOM05D005777 ORTHO05D006854 1.6e-63 248.4 393 41.5
VMungo0251G0419 Vigna mungo HOM05D003100 ORTHO05D003533 3.6e-63 247.3 428 38.3
Actinidia22740 Actinidia chinensis HOM05D005777 ORTHO05D006854 2.8e-60 237.7 346 42.5
Oeu055021.1 Olea europaea HOM05D005777 ORTHO05D006854 4.8e-60 236.9 247 50.2
Migut.E01651 Erythranthe guttata HOM05D005777 ORTHO05D006854 1.2e-58 232.3 275 46.5
Sc01g0010430 Simmondsia chinensis HOM05D005777 ORTHO05D006854 1.6e-58 231.9 264 50.0
Migut.E00735 Erythranthe guttata HOM05D005777 ORTHO05D006854 5.0e-57 226.9 279 45.9
Ah.12g052840 Amaranthus hybridus HOM05D005777 ORTHO05D006854 6.5e-57 226.5 305 44.9
Eucgr.E00752 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-55 222.2 391 37.3
EL10Ac5g12951 Beta vulgaris HOM05D005777 ORTHO05D006854 3.6e-55 220.7 299 47.5
Hund14203 Selenicereus undatus HOM05D005777 ORTHO05D006854 8.9e-54 216.1 242 51.2
PSO170G4328 Papaver somniferum HOM05D005777 ORTHO05D006854 4.1e-51 207.2 396 35.9
Gohir.A02G088000 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.5e-48 198.0 287 43.6
Gorai.005G117300 Gossypium raimondii HOM05D005777 ORTHO05D006854 4.3e-48 197.2 287 43.6
Eucgr.E00762 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.5e-48 196.1 284 41.9
AUR62019875 Chenopodium quinoa HOM05D005777 ORTHO05D006854 9.8e-45 186.0 208 52.9
Duzib116G0305 Durio zibethinus HOM05D005777 ORTHO05D006854 1.3e-44 185.7 254 43.7
Eucgr.E00939 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.3e-44 185.7 197 51.8
FAN04G0565 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.7e-44 185.3 106 90.6
ATR0602G092 Amborella trichopoda HOM05D005777 ORTHO05D006854 8.0e-39 166.4 241 41.9
FAN18G3583 Fragaria x ananassa HOM05D005777 ORTHO05D006854 8.0e-39 166.4 137 68.6
COL.COLO4_25066 Corchorus olitorius HOM05D000316 ORTHO05D006854 1.1e-38 166.0 178 51.1
Dinv37498 Davidia involucrata HOM05D005777 ORTHO05D006854 1.1e-38 166.0 124 65.3
Ciclev10023874m.g Citrus clementina HOM05D005777 ORTHO05D006854 6.8e-38 163.3 161 57.1
GSVIVG01019597001 Vitis vinifera HOM05D005777 ORTHO05D006854 3.7e-36 157.5 137 60.6
HPP92_024143 Vanilla planifolia HOM05D005777 ORTHO05D006854 1.2e-34 152.5 241 41.5
Ciclev10023944m.g Citrus clementina HOM05D005777 ORTHO05D006854 1.6e-34 152.1 189 46.0
Lsat_1_v5_gn_5_82800 Lactuca sativa HOM05D005777 ORTHO05D006854 3.0e-33 147.9 185 49.2
Eucgr.E00900 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.4e-30 139.0 171 48.5
SGA_v2.0_scaffold74G24601 Striga asiatica HOM05D005777 ORTHO05D006854 6.8e-30 136.7 254 35.8
Lsat_1_v5_gn_9_112141 Lactuca sativa HOM05D005777 ORTHO05D006854 1.2e-29 136.0 120 59.2
Eucgr.E00969 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.6e-29 134.8 171 48.0
Eucgr.E00749 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.9e-29 132.9 160 48.8
Thhalv10028849m.g Eutrema salsugineum HOM05D005777 ORTHO05D006854 2.2e-28 131.7 165 47.9
Eucgr.E01013 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.9e-28 130.6 171 47.4
Os09g0363400 Oryza sativa ssp. japonica HOM05D005777 ORTHO05D006854 2.4e-27 128.3 248 34.7
AUR62007011 Chenopodium quinoa HOM05D005777 ORTHO05D006854 1.0e-25 122.9 281 37.0
AL6G44960 Arabidopsis lyrata HOM05D005777 ORTHO05D006854 1.3e-25 122.5 165 45.5
Carub.0006s2962 Capsella rubella HOM05D005777 ORTHO05D006854 1.3e-25 122.5 165 44.8
AT4G10890 Arabidopsis thaliana HOM05D005777 ORTHO05D006854 1.7e-25 122.1 176 44.3
Sp6g06640 Schrenkiella parvula HOM05D005777 ORTHO05D006854 5.6e-24 117.1 165 43.6
Eucgr.E00726 Eucalyptus grandis HOM05D005777 ORTHO05D006854 9.5e-24 116.3 136 50.0
Eucgr.E00696 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-23 115.9 90 63.3
Eucgr.E00912 Eucalyptus grandis HOM05D005777 ORTHO05D006854 1.2e-23 115.9 90 63.3
BcaB01g01556 Brassica carinata HOM05D005777 ORTHO05D006854 1.6e-23 115.5 149 44.3
THA.LOC104813047 Tarenaya hassleriana HOM05D005777 ORTHO05D006854 2.8e-23 114.8 163 45.4
BcaC04g21086 Brassica carinata HOM05D005777 ORTHO05D006854 4.7e-23 114.0 160 43.8
C09p35860 Brassica napus HOM05D005777 ORTHO05D006854 1.1e-22 112.8 160 41.9
BraA09t38398Z Brassica rapa HOM05D005777 ORTHO05D006854 3.1e-22 111.3 158 43.0
CARHR255730 Cardamine hirsuta HOM05D005777 ORTHO05D006854 3.1e-22 111.3 165 43.6
Actinidia27306 Actinidia chinensis HOM05D005777 ORTHO05D006854 4.0e-22 110.9 70 71.4
Eucgr.E00895 Eucalyptus grandis HOM05D005777 ORTHO05D006854 5.2e-22 110.5 102 51.0
BolC9t56419H Brassica oleracea HOM05D005777 ORTHO05D006854 1.2e-21 109.4 160 41.2
CDE03G0022 Ceratophyllum demersum HOM05D002476 ORTHO05D002652 7.6e-21 106.7 270 31.9
Eucgr.E00894 Eucalyptus grandis HOM05D005777 ORTHO05D006854 3.2e-19 101.3 72 62.5
A09p28290 Brassica napus HOM05D005777 ORTHO05D006854 2.1e-18 98.6 168 39.3
Aa31LG9G11240 Aethionema arabicum HOM05D005777 ORTHO05D006854 4.6e-18 97.4 97 52.6
Eucgr.E00686 Eucalyptus grandis HOM05D005777 ORTHO05D006854 2.3e-17 95.1 106 45.3
SHI06955 Sapria himalayana HOM05D005777 ORTHO05D006854 1.1e-14 86.3 84 54.8
Eucgr.H03743 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.0e-14 84.3 80 56.2
QL08p034398 Quercus lobata HOM05D000176 ORTHO05D000106 7.6e-13 80.1 76 51.3
QL06p042986 Quercus lobata HOM05D000529 ORTHO05D000472 9.9e-13 79.7 76 51.3
Gohir.D02G103200 Gossypium hirsutum HOM05D005777 ORTHO05D006854 2.2e-12 78.6 196 31.6
FAN18G0036 Fragaria x ananassa HOM05D005777 ORTHO05D006854 1.9e-11 75.5 35 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2767 Anthoceros agrestis HOM05D005777 ORTHO05D006854 1.2e-10 72.8 170 31.8
Eucgr.H03760 Eucalyptus grandis HOM05D005777 ORTHO05D006854 4.3e-08 64.3 60 56.7
Lsat_1_v5_gn_3_40061 Lactuca sativa HOM05D005777 ORTHO05D006854 2.4e-06 58.5 87 43.7
Hma1.2p1_0338F.1_g129700 Hydrangea macrophylla HOM05D005777 ORTHO05D006854 6.9e-06 57.0 50 50.0


User provided reference genes

Program Settings