Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0184951 Rosa chinensis HOM05D008315 ORTHO05D009452 2.4e-248 861.7 429 100.0
RcHm_v2.0_Chr7g0201721 Rosa chinensis HOM05D008315 ORTHO05D009452 2.3e-126 456.4 232 95.7
RcHm_v2.0_Chr6g0254441 Rosa chinensis HOM05D008315 ORTHO05D009452 1.7e-124 450.3 302 77.5
RcHm_v2.0_Chr7g0201731 Rosa chinensis HOM05D008315 ORTHO05D009452 2.9e-100 369.8 200 94.5
RcHm_v2.0_Chr5g0039211 Rosa chinensis HOM05D008315 ORTHO05D009452 3.5e-82 309.7 161 95.0
RcHm_v2.0_Chr2g0143311 Rosa chinensis HOM05D012440 ORTHO05D009452 5.3e-70 269.2 358 41.3
RcHm_v2.0_Chr2g0111771 Rosa chinensis HOM05D012440 ORTHO05D009452 1.0e-68 265.0 359 39.8
RcHm_v2.0_Chr6g0260911 Rosa chinensis HOM05D012440 ORTHO05D009452 1.4e-59 234.6 276 42.0
FAN01G0827 Fragaria x ananassa HOM05D012440 ORTHO05D009452 5.5e-51 206.1 370 35.7
RcHm_v2.0_Chr2g0136581 Rosa chinensis HOM05D008315 ORTHO05D009452 1.8e-49 201.1 328 38.1
FAN08G2751 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.9e-49 199.9 317 40.1
FAN25G1520 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.2e-49 199.5 317 39.7
RcHm_v2.0_Chr2g0145131 Rosa chinensis HOM05D008315 ORTHO05D009452 8.8e-49 198.7 331 36.6
FAN14G2954 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.8e-46 191.0 337 35.3
FAN08G1914 Fragaria x ananassa HOM05D008315 ORTHO05D009452 2.4e-46 190.7 338 34.9
RcHm_v2.0_Chr7g0237841 Rosa chinensis HOM05D009706 ORTHO05D009452 3.5e-45 186.8 303 33.7
FAN14G0707 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.5e-44 182.6 315 37.5
RcHm_v2.0_Chr4g0435991 Rosa chinensis HOM05D009706 ORTHO05D009452 1.6e-42 177.9 297 36.0
RcHm_v2.0_Chr2g0095801 Rosa chinensis HOM05D008315 ORTHO05D009452 2.1e-42 177.6 331 32.3
FAN24G1602 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.5e-40 169.1 338 33.4
RcHm_v2.0_Chr2g0127541 Rosa chinensis HOM05D008315 ORTHO05D009452 2.4e-38 164.1 190 42.6
FAN10G3967 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.1e-38 163.7 337 32.6
FAN04G2114 Fragaria x ananassa HOM05D012440 ORTHO05D009452 5.4e-38 162.9 370 32.7
FAN03G0562 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.1e-38 162.2 312 35.6
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 1.3e-36 158.3 285 31.6
FAN05G5299 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.2e-35 153.3 324 32.4
FvH4_6g11351 Fragaria vesca HOM05D008315 ORTHO05D009452 1.4e-33 148.3 336 29.8
RcHm_v2.0_Chr3g0468771 Rosa chinensis HOM05D009706 ORTHO05D009452 1.4e-33 148.3 255 34.1
FAN27G0213 Fragaria x ananassa HOM05D009706 ORTHO05D009452 1.5e-32 144.8 299 33.4
FAN02G2771 Fragaria x ananassa HOM05D009706 ORTHO05D009452 2.6e-32 144.1 324 32.1
FvH4_2g21543 Fragaria vesca HOM05D008315 ORTHO05D009452 4.4e-32 143.3 295 32.9
FAN05G2530 Fragaria x ananassa HOM05D009706 ORTHO05D009452 4.4e-32 143.3 309 32.0
FvH4_3g32800 Fragaria vesca HOM05D009706 ORTHO05D009452 5.7e-32 142.9 321 31.5
FAN22G1488 Fragaria x ananassa HOM05D008315 ORTHO05D009452 3.7e-31 140.2 334 30.5
FAN04G1611 Fragaria x ananassa HOM05D008315 ORTHO05D009452 1.4e-30 138.3 329 29.5
FvH4_2g00150 Fragaria vesca HOM05D008315 ORTHO05D009452 1.3e-28 131.7 376 28.2
RcHm_v2.0_Chr3g0481961 Rosa chinensis HOM05D008315 ORTHO05D009452 8.6e-28 129.0 162 42.0
FAN05G1217 Fragaria x ananassa HOM05D008315 ORTHO05D009452 9.5e-27 125.6 268 31.3
RcHm_v2.0_Chr2g0151391 Rosa chinensis HOM05D008315 ORTHO05D009452 3.6e-26 123.6 185 36.2
FvH4_4g00092 Fragaria vesca HOM05D008315 ORTHO05D009452 1.8e-25 121.3 336 27.1
FAN23G0323 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.1e-22 110.2 239 32.2
FAN24G3308 Fragaria x ananassa HOM05D008315 ORTHO05D009452 7.8e-21 105.9 326 27.0
Hma1.2p1_0154F.1_g068115 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 2.3e-17 94.4 266 28.9
Hma1.2p1_0160F.1_g070785 Hydrangea macrophylla HOM05D008315 ORTHO05D009452 2.3e-17 94.4 266 28.9
CSS0035442 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D005970 5.2e-17 93.2 279 26.2
TAR344G0001 Trochodendron aralioides HOM05D001309 ORTHO05D000385 5.2e-17 93.2 268 29.5
MD02G1315300 Malus domestica HOM05D008315 ORTHO05D009452 2.0e-16 91.3 326 28.8
CSS0006329 Camellia sinensis var. sinensis HOM05D001309 ORTHO05D000385 2.6e-16 90.9 289 24.2
Rhsim11G0122900 Rhododendron simsii HOM05D001309 ORTHO05D005970 5.8e-16 89.7 246 28.9
TAR633G1500 Trochodendron aralioides HOM05D001309 ORTHO05D000385 2.9e-15 87.4 252 26.6
Atru.chr1.767 Acer truncatum HOM05D001309 ORTHO05D000385 3.7e-15 87.0 348 25.0
Actinidia00177 Actinidia chinensis HOM05D001309 ORTHO05D000385 3.7e-15 87.0 330 22.7
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 4.9e-15 86.7 290 24.8
Gohir.D12G043100 Gossypium hirsutum HOM05D001309 ORTHO05D000385 1.4e-14 85.1 347 24.2
Gorai.008G045300 Gossypium raimondii HOM05D001309 ORTHO05D005970 1.9e-14 84.7 351 23.9
RcHm_v2.0_Chr4g0393741 Rosa chinensis HOM05D008315 ORTHO05D009452 2.4e-14 84.3 143 35.7
Gohir.A12G044100 Gossypium hirsutum HOM05D001309 ORTHO05D005970 4.1e-14 83.6 347 24.2
Hund24050 Selenicereus undatus HOM05D006468 ORTHO05D006908 4.1e-14 83.6 327 26.9
Hund10707 Selenicereus undatus HOM05D006468 ORTHO05D006908 2.0e-13 81.3 330 25.8
Hund10415 Selenicereus undatus HOM05D006468 ORTHO05D006908 2.7e-13 80.9 372 26.1
CANSAT35G0020 Cannabis sativa HOM05D001309 ORTHO05D000385 3.5e-13 80.5 245 27.8
Sc11g0006850 Simmondsia chinensis HOM05D001309 ORTHO05D000385 6.0e-13 79.7 335 24.5
RcHm_v2.0_Chr5g0015951 Rosa chinensis HOM05D008315 ORTHO05D009452 7.8e-13 79.3 160 29.4
Hund04850 Selenicereus undatus HOM05D006468 ORTHO05D006908 7.8e-13 79.3 299 26.4
FAN13G1770 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.9e-12 77.0 176 31.8
FAN08G0992 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.0e-12 76.6 164 30.5
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-11 75.5 284 26.1
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 1.1e-11 75.5 284 26.1
MBI11_g30647_MAGBIO Magnolia biondii HOM05D001309 ORTHO05D000385 1.1e-11 75.5 315 23.2
RcHm_v2.0_Chr4g0397391 Rosa chinensis HOM05D008315 ORTHO05D009452 1.9e-11 74.7 151 31.8
Actinidia39002 Actinidia chinensis HOM05D001309 ORTHO05D000385 5.6e-11 73.2 215 27.0
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 9.5e-11 72.4 284 25.4
COL.COLO4_36623 Corchorus olitorius HOM05D001309 ORTHO05D000385 9.5e-11 72.4 323 25.7
FAN11G2763 Fragaria x ananassa HOM05D005012 ORTHO05D008319 9.5e-11 72.4 299 24.7
TAR624G1439 Trochodendron aralioides HOM05D001309 ORTHO05D000385 9.5e-11 72.4 237 24.5
Prupe.7G105300 Prunus persica HOM05D005763 ORTHO05D005970 1.6e-10 71.6 255 27.5
Atru.chr6.1726 Acer truncatum HOM05D001309 ORTHO05D000385 2.1e-10 71.2 346 23.7
FAN05G2961 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.1e-10 71.2 83 44.6
FAN13G2460 Fragaria x ananassa HOM05D000534 ORTHO05D000389 3.6e-10 70.5 251 24.3
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 6.2e-10 69.7 175 26.9
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 6.2e-10 69.7 245 25.3
Dinv19412 Davidia involucrata HOM05D001309 ORTHO05D005970 6.2e-10 69.7 253 23.7
FAN21G3607 Fragaria x ananassa HOM05D012440 ORTHO05D009452 6.2e-10 69.7 158 34.8
MD03G1101500 Malus domestica HOM05D008315 ORTHO05D009452 6.2e-10 69.7 88 37.5
FAN04G2636 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-09 68.9 330 22.4
FAN25G0106 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-09 68.9 330 22.4
arahy.Tifrunner.gnm1.ann1.HKAM97 Arachis hypogaea HOM05D010482 ORTHO05D000385 1.4e-09 68.6 274 26.6
FAN03G0559 Fragaria x ananassa HOM05D012440 ORTHO05D009452 1.4e-09 68.6 96 40.6
Prupe.1G578800 Prunus persica HOM05D005763 ORTHO05D005970 1.4e-09 68.6 275 26.2
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 1.8e-09 68.2 220 24.1
EL10Ac5g11855 Beta vulgaris HOM05D004615 ORTHO05D000385 2.3e-09 67.8 284 25.7
FAN27G1488 Fragaria x ananassa HOM05D012440 ORTHO05D009452 2.3e-09 67.8 134 36.6
FAN19G2826 Fragaria x ananassa HOM05D012440 ORTHO05D009452 3.1e-09 67.4 134 37.3
Ah.02g123480 Amaranthus hybridus HOM05D001385 ORTHO05D008760 4.0e-09 67.0 316 21.8
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 4.0e-09 67.0 166 27.7
FAN06G4265 Fragaria x ananassa HOM05D012440 ORTHO05D009452 4.0e-09 67.0 134 37.3
TAR369G0592 Trochodendron aralioides HOM05D001309 ORTHO05D000385 4.0e-09 67.0 226 25.7
FAN20G0527 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.2e-09 66.6 222 27.0
Hund08276 Selenicereus undatus HOM05D006468 ORTHO05D006908 6.8e-09 66.2 297 24.6
FAN17G0399 Fragaria x ananassa HOM05D008315 ORTHO05D009452 8.9e-09 65.9 167 29.9
FAN21G3482 Fragaria x ananassa HOM05D008315 ORTHO05D009452 8.9e-09 65.9 141 30.5
COL.COLO4_07670 Corchorus olitorius HOM05D001309 ORTHO05D000385 1.5e-08 65.1 282 25.9
FAN16G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.8e-08 63.2 355 22.0
FAN20G0161 Fragaria x ananassa HOM05D008315 ORTHO05D009452 5.8e-08 63.2 195 27.2
Hund23750 Selenicereus undatus HOM05D006468 ORTHO05D006908 7.5e-08 62.8 260 26.9
Sopen01g007430 Solanum pennellii HOM05D008041 ORTHO05D000385 7.5e-08 62.8 224 26.8
FAN12G0378 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.7e-07 61.6 205 22.4
Nitab4.5_0028686g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 1.7e-07 61.6 201 27.4
Rhsim06G0190000 Rhododendron simsii HOM05D001309 ORTHO05D000385 2.2e-07 61.2 252 23.8
Rhsim09G0075900 Rhododendron simsii HOM05D000107 ORTHO05D000062 2.2e-07 61.2 245 25.3
MD15G1288300 Malus domestica HOM05D027729 ORTHO05D009452 2.9e-07 60.8 253 24.9
Nn7g37626 Nelumbo nucifera HOM05D001309 ORTHO05D000385 2.9e-07 60.8 247 26.7
FAN20G1519 Fragaria x ananassa HOM05D005012 ORTHO05D005886 3.7e-07 60.5 296 23.6
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 4.9e-07 60.1 131 28.2
Hund18522 Selenicereus undatus HOM05D006468 ORTHO05D006908 4.9e-07 60.1 254 26.4
FAN13G1160 Fragaria x ananassa HOM05D005012 ORTHO05D005886 6.4e-07 59.7 240 25.4
FAN15G1960 Fragaria x ananassa HOM05D008315 ORTHO05D009452 6.4e-07 59.7 166 27.1
Lj2g0009854 Lotus japonicus HOM05D008859 ORTHO05D007166 6.4e-07 59.7 360 21.9
Rhsim10G0033700 Rhododendron simsii HOM05D001309 ORTHO05D000385 8.3e-07 59.3 288 24.7
TAR374G1143 Trochodendron aralioides HOM05D001309 ORTHO05D000385 8.3e-07 59.3 269 26.0
FAN04G2537 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.1e-06 58.9 281 23.1
FvH4_4g09832 Fragaria vesca HOM05D005012 ORTHO05D005886 1.4e-06 58.5 165 24.8
FvH4_4g17840 Fragaria vesca HOM05D008315 ORTHO05D009452 1.4e-06 58.5 104 36.5
FAN15G1881 Fragaria x ananassa HOM05D005012 ORTHO05D005886 1.4e-06 58.5 281 23.1
FAN04G2098 Fragaria x ananassa HOM05D005012 ORTHO05D005886 2.4e-06 57.8 235 24.7
FAN09G2320 Fragaria x ananassa HOM05D000769 ORTHO05D003127 2.4e-06 57.8 44 59.1
FAN10G0147 Fragaria x ananassa HOM05D000539 ORTHO05D000592 2.4e-06 57.8 279 24.7
Nitab4.5_0005139g0010 Nicotiana tabacum HOM05D001309 ORTHO05D000385 2.4e-06 57.8 227 24.7
Nitab4.5_0010535g0040 Nicotiana tabacum HOM05D009290 ORTHO05D009597 3.2e-06 57.4 146 32.2
Hund08000 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.2e-06 57.4 177 28.2
Hund23669 Selenicereus undatus HOM05D006468 ORTHO05D006908 3.2e-06 57.4 173 28.3
FAN04G2305 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.4e-06 56.6 105 31.4
FAN26G2139 Fragaria x ananassa HOM05D005012 ORTHO05D005886 5.4e-06 56.6 279 24.4
PGR004G1992 Punica granatum HOM05D000791 ORTHO05D000669 5.4e-06 56.6 321 23.7
FAN22G0307 Fragaria x ananassa HOM05D012440 ORTHO05D009452 9.2e-06 55.8 107 37.4
SGA_v2.0_scaffold623G53232 Striga asiatica HOM05D004615 ORTHO05D000385 9.2e-06 55.8 128 25.0


User provided reference genes

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