Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0184911 Rosa chinensis HOM05D000940 ORTHO05D018859 1.5e-46 189.1 93 100.0
Cpa.g.sc130.2 Carica papaya HOM05D000940 ORTHO05D000782 2.9e-21 105.1 88 56.8
Gohir.A07G052100 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.2e-19 99.8 86 59.3
CSS0005703 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 2.1e-19 99.0 88 56.8
Gohir.D07G056600 Gossypium hirsutum HOM05D000940 ORTHO05D000782 1.7e-18 95.9 80 61.2
Gorai.001G060100 Gossypium raimondii HOM05D000940 ORTHO05D000782 1.7e-18 95.9 80 61.2
arahy.Tifrunner.gnm1.ann1.T1FE81 Arachis hypogaea HOM05D000940 ORTHO05D000782 1.5e-17 92.8 80 55.0
HanXRQChr07g0198301 Helianthus annuus HOM05D000940 ORTHO05D000782 2.4e-15 85.5 79 57.0
Dinv33358 Davidia involucrata HOM05D000940 ORTHO05D018859 2.9e-13 78.6 60 58.3
CANSAT78G2163 Cannabis sativa HOM05D000940 ORTHO05D000782 8.4e-13 77.0 87 40.2
Medtr7g086420 Medicago truncatula HOM05D000940 ORTHO05D000782 3.2e-12 75.1 87 42.5
Medtr6g027720 Medicago truncatula HOM05D000940 ORTHO05D000782 4.2e-12 74.7 85 45.9
Hma1.2p1_2815F.1_g328930 Hydrangea macrophylla HOM05D000940 ORTHO05D000782 5.4e-12 74.3 88 48.9
Ciclev10030797m.g Citrus clementina HOM05D000940 ORTHO05D000782 1.6e-11 72.8 88 46.6
AUR62014300 Chenopodium quinoa HOM05D000940 ORTHO05D000782 4.6e-11 71.2 87 39.1
Ah.04g162650 Amaranthus hybridus HOM05D000940 ORTHO05D000782 7.8e-11 70.5 77 42.9
AUR62034093 Chenopodium quinoa HOM05D000940 ORTHO05D000782 7.8e-11 70.5 87 37.9
Eucgr.K01521 Eucalyptus grandis HOM05D000940 ORTHO05D000782 7.8e-11 70.5 87 41.4
Ca_25683_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 1.3e-10 69.7 87 40.2
TPR.G35640 Trifolium pratense HOM05D000940 ORTHO05D000782 1.7e-10 69.3 85 43.5
MBI08_g37187_MAGBIO Magnolia biondii HOM05D000940 ORTHO05D000782 3.9e-10 68.2 85 50.6
Psat1g090000 Pisum sativum HOM05D000940 ORTHO05D000782 5.1e-10 67.8 85 42.4
Mapoly0146s0009 Marchantia polymorpha HOM05D000940 ORTHO05D000782 3.3e-09 65.1 94 39.4
CSS0010614 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 4.3e-09 64.7 79 41.8
MD07G1057800 Malus domestica HOM05D000940 ORTHO05D000782 7.3e-09 63.9 93 34.4
vmacro19216 Vaccinium macrocarpon HOM05D000940 ORTHO05D000782 7.3e-09 63.9 57 49.1
FAN01G2965 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.3e-08 63.2 90 35.6
FAN08G1484 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.3e-08 63.2 87 42.5
FAN13G2314 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.3e-08 63.2 87 42.5
CSS0023447 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.6e-08 62.8 79 40.5
CSS0045696 Camellia sinensis var. sinensis HOM05D000940 ORTHO05D000782 1.6e-08 62.8 79 40.5
FvH4_7g05090 Fragaria vesca HOM05D000940 ORTHO05D000782 3.6e-08 61.6 90 34.4
FAN10G3589 Fragaria x ananassa HOM05D000940 ORTHO05D000782 3.6e-08 61.6 90 34.4
Prupe.2G063900 Prunus persica HOM05D000940 ORTHO05D000782 3.6e-08 61.6 90 35.6
RcHm_v2.0_Chr1g0331461 Rosa chinensis HOM05D000940 ORTHO05D000782 3.6e-08 61.6 90 32.2
FAN04G1277 Fragaria x ananassa HOM05D000940 ORTHO05D000782 4.8e-08 61.2 87 41.4
FAN06G2069 Fragaria x ananassa HOM05D000940 ORTHO05D000782 4.8e-08 61.2 90 34.4
Atru.chr12.1172 Acer truncatum HOM05D000940 ORTHO05D000782 6.2e-08 60.8 89 41.6
arahy.Tifrunner.gnm1.ann1.0G4IZN Arachis hypogaea HOM05D000940 ORTHO05D000782 8.1e-08 60.5 88 36.4
PGR119G0763 Punica granatum HOM05D000940 ORTHO05D000782 8.1e-08 60.5 78 39.7
RcHm_v2.0_Chr7g0190561 Rosa chinensis HOM05D000940 ORTHO05D000782 8.1e-08 60.5 87 40.2
FvH4_5g07890 Fragaria vesca HOM05D000940 ORTHO05D000782 1.1e-07 60.1 87 41.4
FAN18G0898 Fragaria x ananassa HOM05D000940 ORTHO05D000782 1.1e-07 60.1 87 41.4
Ciclev10018967m.g Citrus clementina HOM05D000940 ORTHO05D000782 2.4e-07 58.9 88 38.6
Solyc10g081420.2 Solanum lycopersicum HOM05D000940 ORTHO05D000782 2.4e-07 58.9 87 35.6
Migut.L01330 Erythranthe guttata HOM05D000940 ORTHO05D000782 3.1e-07 58.5 86 36.0
Nitab4.5_0028670g0010 Nicotiana tabacum HOM05D000940 ORTHO05D000782 3.1e-07 58.5 87 35.6
Ca_08304_v3 Cicer arietinum L. HOM05D000940 ORTHO05D000782 1.2e-06 56.6 89 37.1
PGSC0003DMG400028212 Solanum tuberosum HOM05D000940 ORTHO05D000782 1.2e-06 56.6 87 34.5
Medtr6g023390 Medicago truncatula HOM05D000940 ORTHO05D000782 1.5e-06 56.2 86 38.4
GSVIVG01029950001 Vitis vinifera HOM05D000940 ORTHO05D000782 1.5e-06 56.2 52 42.3
Atru.chr6.2522 Acer truncatum HOM05D000940 ORTHO05D000782 2.0e-06 55.8 49 44.9
arahy.Tifrunner.gnm1.ann1.9QIA1G Arachis hypogaea HOM05D000940 ORTHO05D000782 2.0e-06 55.8 88 36.4
Potri.013G064300 Populus trichocarpa HOM05D000940 ORTHO05D000782 2.0e-06 55.8 75 34.7
Nitab4.5_0004148g0020 Nicotiana tabacum HOM05D000940 ORTHO05D000782 3.4e-06 55.1 87 33.3
TPR.G17859 Trifolium pratense HOM05D000940 ORTHO05D000782 4.4e-06 54.7 87 34.5
Atru.chr9.1088 Acer truncatum HOM05D000940 ORTHO05D000782 5.8e-06 54.3 88 35.2
arahy.Tifrunner.gnm1.ann1.9M10FC Arachis hypogaea HOM05D000940 ORTHO05D000782 5.8e-06 54.3 43 51.2
Duzib106G1382 Durio zibethinus HOM05D000940 ORTHO05D000782 5.8e-06 54.3 75 38.7
Lalb_Chr21g0317281 Lupinus albus HOM05D000940 ORTHO05D000782 5.8e-06 54.3 85 36.5
Actinidia18368 Actinidia chinensis HOM05D000940 ORTHO05D000782 7.6e-06 53.9 76 38.2


User provided reference genes

Program Settings