Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0184121 Rosa chinensis HOM05D002505 ORTHO05D007115 5.2e-108 394.4 204 100.0
FAN17G1638 Fragaria x ananassa HOM05D002505 ORTHO05D007115 5.6e-94 347.8 198 92.4
FAN07G1120 Fragaria x ananassa HOM05D002505 ORTHO05D007115 9.5e-94 347.1 198 92.4
FvH4_4g16080 Fragaria vesca HOM05D002505 ORTHO05D007115 2.8e-93 345.5 198 92.4
FAN12G2820 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.8e-93 345.5 198 92.4
FAN22G1998 Fragaria x ananassa HOM05D002505 ORTHO05D007115 6.2e-93 344.4 198 91.4
Prupe.5G127300 Prunus persica HOM05D002505 ORTHO05D007115 7.8e-88 327.4 198 86.9
FAN13G3213 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.6e-83 312.4 188 88.3
RcHm_v2.0_Chr7g0186571 Rosa chinensis HOM05D002505 ORTHO05D007115 5.8e-83 311.2 198 84.8
FAN08G0319 Fragaria x ananassa HOM05D002505 ORTHO05D007115 2.3e-79 299.3 184 88.0
MD06G1114600 Malus domestica HOM05D002505 ORTHO05D007115 9.6e-78 293.9 199 76.9
QL02p027659 Quercus lobata HOM05D002505 ORTHO05D007115 3.6e-77 292.0 198 75.3
Haze_09143 Corylus avellana HOM05D002505 ORTHO05D007115 3.1e-76 288.9 198 75.8
Cfa011943 Carpinus fangiana HOM05D002505 ORTHO05D007115 1.5e-75 286.6 198 75.3
Dinv37391 Davidia involucrata HOM05D002505 ORTHO05D007115 5.8e-75 284.6 198 72.7
GSVIVG01019628001 Vitis vinifera HOM05D002505 ORTHO05D007115 5.8e-75 284.6 198 71.7
CANSAT21G2418 Cannabis sativa HOM05D002505 ORTHO05D007115 9.9e-75 283.9 197 75.1
CiPaw.11G114300 Carya illinoinensis HOM05D002505 ORTHO05D007115 1.3e-74 283.5 196 75.0
Eucgr.D01694 Eucalyptus grandis HOM05D002505 ORTHO05D007115 8.4e-74 280.8 196 70.9
Manes.02G004600 Manihot esculenta HOM05D002505 ORTHO05D007115 1.1e-73 280.4 201 72.1
TWI60G0007 Tripterygium wilfordii HOM05D002505 ORTHO05D007115 1.1e-73 280.4 197 72.6
Thecc.03G223700 Theobroma cacao HOM05D002505 ORTHO05D007115 1.4e-73 280.0 196 73.0
Dinv25607 Davidia involucrata HOM05D002505 ORTHO05D007115 1.9e-73 279.6 198 72.2
Potri.003G145100 Populus trichocarpa HOM05D002505 ORTHO05D007115 4.2e-73 278.5 197 73.6
TPR.G36929 Trifolium pratense HOM05D002505 ORTHO05D007115 7.1e-73 277.7 194 71.6
TAR375G0040 Trochodendron aralioides HOM05D002505 ORTHO05D007115 1.2e-72 276.9 204 68.1
Ca_12555_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.0e-72 274.6 194 71.1
Ca_12566_v3 Cicer arietinum L. HOM05D002505 ORTHO05D007115 6.0e-72 274.6 194 71.1
Dinv11454 Davidia involucrata HOM05D002505 ORTHO05D007115 6.0e-72 274.6 198 70.7
Actinidia22196 Actinidia chinensis HOM05D002505 ORTHO05D007115 2.3e-71 272.7 197 72.1
Cpa.g.sc175.6 Carica papaya HOM05D002505 ORTHO05D007115 3.0e-71 272.3 199 69.8
vmacro11517 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.1e-71 271.6 197 70.6
Glyma.06G132900 Glycine max HOM05D002505 ORTHO05D007115 6.6e-71 271.2 195 70.8
Sabra01G0062100 Salix brachista HOM05D002505 ORTHO05D007115 1.5e-70 270.0 197 73.1
Medtr5g025880 Medicago truncatula HOM05D002505 ORTHO05D007115 3.3e-70 268.9 195 70.3
Ciclev10020379m.g Citrus clementina HOM05D002505 ORTHO05D007115 4.3e-70 268.5 196 69.9
PGR031G3103 Punica granatum HOM05D002505 ORTHO05D007115 4.8e-69 265.0 197 67.0
arahy.Tifrunner.gnm1.ann1.Y3P1ER Arachis hypogaea HOM05D002505 ORTHO05D007115 6.2e-69 264.6 195 68.7
LjContig00141g0018407 Lotus japonicus HOM05D002505 ORTHO05D007115 6.2e-69 264.6 196 69.4
Nitab4.5_0005042g0030 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.4e-68 263.5 198 68.2
Gohir.A12G238900 Gossypium hirsutum HOM05D002505 ORTHO05D007115 1.8e-68 263.1 198 68.7
Lj2A158G82 Lonicera japonica HOM05D002505 ORTHO05D007115 3.1e-68 262.3 200 66.5
Peaxi162Scf00074g00358 Petunia axillaris HOM05D002505 ORTHO05D007115 3.1e-68 262.3 198 67.7
Psat6g045400 Pisum sativum HOM05D002505 ORTHO05D007115 3.1e-68 262.3 199 66.3
Aqoxy5G02423 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 5.3e-68 261.5 201 63.7
CSS0047752 Camellia sinensis var. sinensis HOM05D002505 ORTHO05D007115 5.3e-68 261.5 177 74.6
Hma1.2p1_0456F.1_g156510 Hydrangea macrophylla HOM05D002505 ORTHO05D007115 5.3e-68 261.5 193 68.4
Medtr1g032200 Medicago truncatula HOM05D002505 ORTHO05D007115 6.9e-68 261.2 195 68.7
VMungo1309G3079 Vigna mungo HOM05D002505 ORTHO05D007115 6.9e-68 261.2 194 68.6
arahy.Tifrunner.gnm1.ann1.31YZJ9 Arachis hypogaea HOM05D002505 ORTHO05D007115 9.0e-68 260.8 195 68.2
MELO3C012450.2 Cucumis melo HOM05D002505 ORTHO05D007115 9.0e-68 260.8 195 70.3
Glyma.04G232000 Glycine max HOM05D002505 ORTHO05D007115 1.2e-67 260.4 195 68.2
Lalb_Chr17g0338531 Lupinus albus HOM05D002505 ORTHO05D007115 1.2e-67 260.4 198 68.2
Duzib205G1766 Durio zibethinus HOM05D002505 ORTHO05D007115 1.5e-67 260.0 198 67.7
Glyma.13G121900 Glycine max HOM05D002505 ORTHO05D007115 1.5e-67 260.0 195 68.7
CsaV3_5G036540 Cucumis sativus L. HOM05D002505 ORTHO05D007115 2.0e-67 259.6 197 68.5
Sc22g0004750 Simmondsia chinensis HOM05D002505 ORTHO05D007115 2.0e-67 259.6 196 66.3
Gohir.D12G240000 Gossypium hirsutum HOM05D002505 ORTHO05D007115 2.6e-67 259.2 198 68.2
Aqoxy5G01632 Aquilegia oxysepala HOM05D002505 ORTHO05D007115 1.3e-66 256.9 201 63.2
Cc00_g23270 Coffea canephora HOM05D002505 ORTHO05D007115 1.3e-66 256.9 197 65.5
Nitab4.5_0002728g0050 Nicotiana tabacum HOM05D002505 ORTHO05D007115 1.3e-66 256.9 198 67.7
PGSC0003DMG400012246 Solanum tuberosum HOM05D002505 ORTHO05D007115 1.3e-66 256.9 198 66.2
Gorai.008G257100 Gossypium raimondii HOM05D002505 ORTHO05D007115 2.2e-66 256.1 198 67.7
DCAR_009648 Daucus carota HOM05D002505 ORTHO05D007115 2.9e-66 255.8 191 67.0
AUR62019897 Chenopodium quinoa HOM05D002505 ORTHO05D007115 4.9e-66 255.0 186 67.2
Oeu010746.1 Olea europaea HOM05D002505 ORTHO05D007115 1.1e-65 253.8 197 66.5
CAN.G567.73 Capsicum annuum HOM05D002505 ORTHO05D007115 1.4e-65 253.4 198 65.7
Phvul.009G039500 Phaseolus vulgaris HOM05D002505 ORTHO05D007115 1.9e-65 253.1 194 66.0
Sed0001422 Sechium edule HOM05D002505 ORTHO05D007115 4.2e-65 251.9 195 69.2
AUR62007033 Chenopodium quinoa HOM05D002505 ORTHO05D007115 5.4e-65 251.5 186 65.6
Lalb_Chr10g0095811 Lupinus albus HOM05D002505 ORTHO05D007115 1.6e-64 250.0 197 66.5
Sopen08g031180 Solanum pennellii HOM05D002505 ORTHO05D007115 3.5e-64 248.8 198 65.2
EL10Ac5g12461 Beta vulgaris HOM05D002505 ORTHO05D007115 4.6e-64 248.4 198 62.6
Solyc08g082960.3 Solanum lycopersicum HOM05D002505 ORTHO05D007115 2.3e-63 246.1 198 64.6
MSTRG.2011 Avicennia marina HOM05D002505 ORTHO05D007115 5.1e-63 245.0 197 65.0
HanXRQChr02g0047181 Helianthus annuus HOM05D002505 ORTHO05D007115 1.1e-62 243.8 198 63.1
SalBow6G5481 Salvia bowleyana HOM05D002505 ORTHO05D007115 1.5e-62 243.4 195 62.1
ClCG05G020760 Citrullus lanatus HOM05D002505 ORTHO05D007115 5.6e-62 241.5 195 66.7
Potri.001G085800 Populus trichocarpa HOM05D002505 ORTHO05D007115 1.6e-61 240.0 176 71.6
ECA240G2126 Erigeron canadensis HOM05D002505 ORTHO05D007115 1.8e-60 236.5 198 60.1
Migut.J00879 Erythranthe guttata HOM05D002505 ORTHO05D007115 3.1e-60 235.7 197 61.9
Nn4g26685 Nelumbo nucifera HOM05D002505 ORTHO05D007115 1.2e-59 233.8 161 73.3
Aa31LG1G18070 Aethionema arabicum HOM05D002505 ORTHO05D007115 4.5e-59 231.9 199 58.8
MBI04_g06931_MAGBIO Magnolia biondii HOM05D002505 ORTHO05D007115 4.5e-59 231.9 192 62.0
PSO339G4385 Papaver somniferum HOM05D002505 ORTHO05D007115 4.5e-59 231.9 201 57.2
COL.COLO4_10772 Corchorus olitorius HOM05D002505 ORTHO05D007115 5.8e-59 231.5 171 70.8
PSO384G5034 Papaver somniferum HOM05D002505 ORTHO05D007115 7.6e-59 231.1 200 57.0
PSO017G1033 Papaver somniferum HOM05D002505 ORTHO05D007115 1.9e-57 226.5 201 57.2
SGA_v2.0_scaffold104G30125 Striga asiatica HOM05D002505 ORTHO05D007115 2.4e-57 226.1 188 61.2
unitig_22.g5105 Utricularia gibba HOM05D002505 ORTHO05D007115 1.2e-56 223.8 202 57.4
CDE11G0043 Ceratophyllum demersum HOM05D002505 ORTHO05D007115 1.8e-55 219.9 186 58.6
THA.LOC104823623 Tarenaya hassleriana HOM05D002505 ORTHO05D007115 3.0e-55 219.2 202 55.9
HPP92_022360 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.1e-55 218.4 202 55.4
Carub.0008s2460 Capsella rubella HOM05D002505 ORTHO05D007115 1.1e-54 217.2 202 55.0
HPP92_022335 Vanilla planifolia HOM05D002505 ORTHO05D007115 5.6e-54 214.9 202 54.5
Os10g0520700 Oryza sativa ssp. japonica HOM05D002505 ORTHO05D007115 1.3e-53 213.8 202 54.5
Zm00001eb021220 Zea mays HOM05D002505 ORTHO05D007115 1.6e-53 213.4 199 54.3
A06p30440 Brassica napus HOM05D002505 ORTHO05D007115 2.8e-53 212.6 202 55.9
BraA06t25993Z Brassica rapa HOM05D002505 ORTHO05D007115 4.8e-53 211.8 202 56.4
BolC3t18519H Brassica oleracea HOM05D002505 ORTHO05D007115 2.4e-52 209.5 202 55.4
CARHR277730 Cardamine hirsuta HOM05D002505 ORTHO05D007115 3.1e-52 209.1 202 55.0
AT5G63830 Arabidopsis thaliana HOM05D002505 ORTHO05D007115 6.9e-52 208.0 202 53.5
C03p62620 Brassica napus HOM05D002505 ORTHO05D007115 9.0e-52 207.6 202 55.0
BcaC01g02620 Brassica carinata HOM05D002505 ORTHO05D007115 2.0e-51 206.5 202 55.0
AL8G41060 Arabidopsis lyrata HOM05D002505 ORTHO05D007115 2.6e-51 206.1 202 53.0
Sp2g26890 Schrenkiella parvula HOM05D002505 ORTHO05D007115 7.6e-51 204.5 196 55.6
Lsat_1_v5_gn_6_9040 Lactuca sativa HOM05D002505 ORTHO05D007115 1.9e-49 199.9 183 56.8
ATR0757G152 Amborella trichopoda HOM05D002505 ORTHO05D007115 6.7e-47 191.4 208 51.4
Thhalv10004334m.g Eutrema salsugineum HOM05D002505 ORTHO05D007115 1.3e-45 187.2 175 54.9
SEGI_04382 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 6.3e-45 184.9 211 46.4
FAN05G1175 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.4e-44 183.7 121 80.2
Atru.chr5.483 Acer truncatum HOM05D002505 ORTHO05D007115 4.5e-43 178.7 130 70.8
vmacro04587 Vaccinium macrocarpon HOM05D002505 ORTHO05D007115 5.9e-43 178.3 196 52.6
RhsimUnG0115700 Rhododendron simsii HOM05D002505 ORTHO05D007115 1.2e-40 170.6 133 68.4
FAN14G3314 Fragaria x ananassa HOM05D002505 ORTHO05D007115 1.3e-39 167.2 129 70.5
AagrBONN_evm.TU.Sc2ySwM_368.1194 Anthoceros agrestis HOM05D002505 ORTHO05D007115 8.2e-37 157.9 232 40.9
SEGI_16855 Sequoiadendron giganteum HOM05D002505 ORTHO05D007115 1.0e-34 151.0 136 54.4
SMO348G0019 Selaginella moellendorffii HOM05D002505 ORTHO05D007115 7.2e-33 144.8 195 44.6
Pp3c16_17440 Physcomitrium patens HOM05D002505 ORTHO05D007115 2.0e-30 136.7 221 37.1
Mapoly0049s0078 Marchantia polymorpha HOM05D002505 ORTHO05D007115 4.1e-28 129.0 228 34.6
Actinidia04163 Actinidia chinensis HOM05D002436 ORTHO05D002754 1.0e-23 114.4 132 51.5
Medtr1g090530 Medicago truncatula HOM05D002505 ORTHO05D007115 1.0e-23 114.4 153 46.4
FvH4_5g11280 Fragaria vesca HOM05D002505 ORTHO05D007115 1.2e-19 100.9 197 39.1
CBR_g20449 Chara braunii HOM05D002505 ORTHO05D007115 2.0e-19 100.1 224 31.7
BraA06t26113Z Brassica rapa HOM05D005837 ORTHO05D007594 9.4e-09 64.7 111 40.5
MCO07G240 Micromonas commoda HOM05D002505 ORTHO05D007115 1.8e-07 60.5 160 29.4
HanXRQChr03g0061211 Helianthus annuus HOM05D002505 ORTHO05D007115 1.5e-06 57.4 80 42.5


User provided reference genes

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