Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0183201 Rosa chinensis HOM05D007161 ORTHO05D009103 1.3e-56 223.4 167 100.0
FvH4_5g13740 Fragaria vesca HOM05D007161 ORTHO05D009103 1.1e-47 193.7 167 91.6
FAN13G1189 Fragaria x ananassa HOM05D007161 ORTHO05D009103 5.1e-45 184.9 167 89.8
FAN08G2338 Fragaria x ananassa HOM05D007161 ORTHO05D009103 1.9e-44 183.0 168 89.9
FAN18G1870 Fragaria x ananassa HOM05D007161 ORTHO05D009103 3.3e-44 182.2 167 90.4
Prupe.5G206100 Prunus persica HOM05D007161 ORTHO05D009103 6.1e-30 134.8 177 74.6
Sabra15G0084100 Salix brachista HOM05D007161 ORTHO05D009103 6.7e-29 131.3 180 69.4
Manes.06G083700 Manihot esculenta HOM05D007161 ORTHO05D009103 4.4e-28 128.6 160 74.4
Ciclev10022373m.g Citrus clementina HOM05D007161 ORTHO05D009103 2.2e-27 126.3 195 63.6
TWI81G0640 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 3.7e-27 125.6 173 69.9
QL10p019814 Quercus lobata HOM05D007161 ORTHO05D009103 1.4e-26 123.6 199 63.3
Haze_07737 Corylus avellana HOM05D007161 ORTHO05D009103 1.8e-26 123.2 185 65.9
Atru.chr9.557 Acer truncatum HOM05D007161 ORTHO05D009103 3.1e-26 122.5 196 65.3
MD06G1225900 Malus domestica HOM05D007161 ORTHO05D009103 3.1e-26 122.5 180 67.8
MD14G1212800 Malus domestica HOM05D007161 ORTHO05D009103 3.1e-26 122.5 179 68.2
TWI60G0438 Tripterygium wilfordii HOM05D007161 ORTHO05D009103 3.1e-26 122.5 173 69.4
Dinv22772 Davidia involucrata HOM05D007161 ORTHO05D009103 4.1e-26 122.1 167 68.3
Cfa019345 Carpinus fangiana HOM05D007161 ORTHO05D009103 9.1e-26 120.9 185 65.4
CANSAT56G0131 Cannabis sativa HOM05D007161 ORTHO05D009103 1.2e-25 120.6 185 66.5
CiPaw.11G054500 Carya illinoinensis HOM05D007161 ORTHO05D009103 2.0e-25 119.8 160 71.2
Peaxi162Scf00201g00331 Petunia axillaris HOM05D007161 ORTHO05D009103 2.6e-25 119.4 146 74.7
Eucgr.B00604 Eucalyptus grandis HOM05D007161 ORTHO05D009103 5.9e-25 118.2 164 68.9
A03p03560 Brassica napus HOM05D007161 ORTHO05D009103 1.0e-24 117.5 145 75.9
BraA03t09706Z Brassica rapa HOM05D007161 ORTHO05D009103 1.0e-24 117.5 145 75.9
PGR083G0667 Punica granatum HOM05D007161 ORTHO05D009103 1.3e-24 117.1 159 71.1
C03p04010 Brassica napus HOM05D007161 ORTHO05D009103 2.9e-24 115.9 145 75.2
ClCG04G011740 Citrullus lanatus HOM05D007161 ORTHO05D009103 2.9e-24 115.9 196 63.3
MELO3C002036.2 Cucumis melo HOM05D007161 ORTHO05D009103 2.9e-24 115.9 168 69.6
Potri.015G058600 Populus trichocarpa HOM05D007161 ORTHO05D009103 2.9e-24 115.9 160 70.6
SGA_v2.0_scaffold42G16039 Striga asiatica HOM05D007161 ORTHO05D009103 2.9e-24 115.9 145 75.2
Nitab4.5_0001485g0090 Nicotiana tabacum HOM05D007161 ORTHO05D009103 3.8e-24 115.5 165 67.9
BcaB01g05640 Brassica carinata HOM05D007161 ORTHO05D009103 5.0e-24 115.2 145 75.2
CsaV3_1G006050 Cucumis sativus L. HOM05D007161 ORTHO05D009103 5.0e-24 115.2 168 69.0
BcaB01g05681 Brassica carinata HOM05D007161 ORTHO05D009103 6.5e-24 114.8 169 67.5
Rhsim08G0144900 Rhododendron simsii HOM05D007161 ORTHO05D009103 6.5e-24 114.8 153 73.2
BolC3t12938H Brassica oleracea HOM05D007161 ORTHO05D009103 8.5e-24 114.4 146 74.7
PGSC0003DMG400024633 Solanum tuberosum HOM05D007161 ORTHO05D009103 3.2e-23 112.5 166 66.9
Cc00_g12110 Coffea canephora HOM05D007161 ORTHO05D009103 4.2e-23 112.1 160 69.4
arahy.Tifrunner.gnm1.ann1.KM320G Arachis hypogaea HOM05D007161 ORTHO05D009103 5.5e-23 111.7 168 66.7
Sed0004238 Sechium edule HOM05D007161 ORTHO05D009103 5.5e-23 111.7 163 70.6
Phvul.009G202100 Phaseolus vulgaris HOM05D007161 ORTHO05D009103 7.2e-23 111.3 163 68.1
Sopen03g034090 Solanum pennellii HOM05D007161 ORTHO05D009103 7.2e-23 111.3 166 65.7
DCAR_011565 Daucus carota HOM05D007161 ORTHO05D009103 9.4e-23 110.9 147 71.4
Nn4g23440 Nelumbo nucifera HOM05D007161 ORTHO05D009103 9.4e-23 110.9 166 68.7
MSTRG.4482 Avicennia marina HOM05D007161 ORTHO05D009103 1.2e-22 110.5 167 64.1
CSS0009196 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.2e-22 110.5 126 81.7
CSS0029825 Camellia sinensis var. sinensis HOM05D007161 ORTHO05D009103 1.2e-22 110.5 126 81.7
vmacro17616 Vaccinium macrocarpon HOM05D007161 ORTHO05D009103 1.2e-22 110.5 128 79.7
Ah.02g114100 Amaranthus hybridus HOM05D007161 ORTHO05D009103 1.6e-22 110.2 192 63.0
arahy.Tifrunner.gnm1.ann1.N0KAAL Arachis hypogaea HOM05D007161 ORTHO05D009103 2.1e-22 109.8 168 66.7
CAN.G1228.16 Capsicum annuum HOM05D007161 ORTHO05D009103 2.1e-22 109.8 165 64.8
PSO478G3435 Papaver somniferum HOM05D007161 ORTHO05D009103 2.7e-22 109.4 150 70.7
Sp6g34900 Schrenkiella parvula HOM05D007161 ORTHO05D009103 2.7e-22 109.4 145 73.1
SalBow7G4182 Salvia bowleyana HOM05D007161 ORTHO05D009103 3.6e-22 109.0 146 74.0
GSVIVG01008106001 Vitis vinifera HOM05D007161 ORTHO05D009103 3.6e-22 109.0 158 69.0
TAR629G0203 Trochodendron aralioides HOM05D007161 ORTHO05D009103 4.7e-22 108.6 167 65.9
MSTRG.9598 Avicennia marina HOM05D007161 ORTHO05D009103 6.1e-22 108.2 162 69.1
Glyma.04G161600 Glycine max HOM05D007161 ORTHO05D009103 6.1e-22 108.2 164 66.5
Thhalv10014904m.g Eutrema salsugineum HOM05D007161 ORTHO05D009103 8.0e-22 107.8 145 71.7
PSO017G0728 Papaver somniferum HOM05D007161 ORTHO05D009103 1.4e-21 107.1 145 71.0
Nitab4.5_0007356g0010 Nicotiana tabacum HOM05D007161 ORTHO05D009103 2.3e-21 106.3 125 81.6
Thecc.03G103000 Theobroma cacao HOM05D007161 ORTHO05D009103 3.0e-21 105.9 169 65.7
CDE05G0262 Ceratophyllum demersum HOM05D007161 ORTHO05D009103 3.9e-21 105.5 152 69.7
THA.LOC104801155 Tarenaya hassleriana HOM05D007161 ORTHO05D009103 3.9e-21 105.5 164 65.9
Lj1g0027416 Lotus japonicus HOM05D007161 ORTHO05D009103 5.2e-21 105.1 149 73.8
Aqoxy3G03679 Aquilegia oxysepala HOM05D007161 ORTHO05D009103 8.8e-21 104.4 149 70.5
Carub.0006s0694 Capsella rubella HOM05D007161 ORTHO05D009103 1.1e-20 104.0 145 70.3
Oeu017188.1 Olea europaea HOM05D007161 ORTHO05D009103 1.1e-20 104.0 137 70.1
Gohir.A07G068000 Gossypium hirsutum HOM05D007161 ORTHO05D009103 1.5e-20 103.6 168 66.1
AUR62008547 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.6e-20 102.8 173 61.8
Glyma.06G204200 Glycine max HOM05D007161 ORTHO05D009103 2.6e-20 102.8 165 64.8
Gohir.D07G072600 Gossypium hirsutum HOM05D007161 ORTHO05D009103 3.3e-20 102.4 168 66.1
Gorai.001G076800 Gossypium raimondii HOM05D007161 ORTHO05D009103 3.3e-20 102.4 168 66.1
ECA246G0920 Erigeron canadensis HOM05D007161 ORTHO05D009103 4.4e-20 102.1 152 69.1
HanXRQChr08g0230491 Helianthus annuus HOM05D007161 ORTHO05D009103 4.4e-20 102.1 128 76.6
Duzib084G1357 Durio zibethinus HOM05D007161 ORTHO05D009103 5.7e-20 101.7 117 83.8
COL.COLO4_24339 Corchorus olitorius HOM05D007161 ORTHO05D009103 9.7e-20 100.9 161 66.5
Solyc03g115020.3 Solanum lycopersicum HOM05D007161 ORTHO05D009103 9.7e-20 100.9 158 63.9
Lsat_1_v5_gn_5_22381 Lactuca sativa HOM05D007161 ORTHO05D009103 1.3e-19 100.5 147 68.0
Hund02576 Selenicereus undatus HOM05D007161 ORTHO05D009103 2.2e-19 99.8 197 58.4
TPR.G12153 Trifolium pratense HOM05D007161 ORTHO05D009103 2.2e-19 99.8 163 68.1
ATR0177G008 Amborella trichopoda HOM05D007161 ORTHO05D009103 2.8e-19 99.4 169 60.9
Ca_14363_v3 Cicer arietinum L. HOM05D007161 ORTHO05D009103 2.8e-19 99.4 162 67.3
HanXRQChr17g0550221 Helianthus annuus HOM05D007161 ORTHO05D009103 2.8e-19 99.4 67 79.1
Lj5C102G4 Lonicera japonica HOM05D007161 ORTHO05D009103 4.8e-19 98.6 146 71.2
CARHR205130 Cardamine hirsuta HOM05D007161 ORTHO05D009103 6.3e-19 98.2 145 69.0
Os12g0575000 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 1.1e-18 97.4 130 74.6
Migut.D01637 Erythranthe guttata HOM05D007161 ORTHO05D009103 1.8e-18 96.7 152 70.4
Sc11g0004490 Simmondsia chinensis HOM05D007161 ORTHO05D009103 4.1e-18 95.5 186 59.7
AL6G18400 Arabidopsis lyrata HOM05D007161 ORTHO05D009103 7.0e-18 94.7 146 68.5
CDE02G4042 Ceratophyllum demersum HOM05D005465 ORTHO05D006612 9.1e-18 94.4 121 76.9
Medtr3g026020 Medicago truncatula HOM05D007161 ORTHO05D009103 9.1e-18 94.4 162 67.3
Psat5g207080 Pisum sativum HOM05D007161 ORTHO05D009103 9.1e-18 94.4 162 66.0
AT5G08050 Arabidopsis thaliana HOM05D007161 ORTHO05D009103 1.2e-17 94.0 146 67.8
EL10Ac5g11145 Beta vulgaris HOM05D007161 ORTHO05D009103 1.2e-17 94.0 195 59.0
Lalb_Chr12g0199331 Lupinus albus HOM05D007161 ORTHO05D009103 1.2e-17 94.0 144 70.1
Aa31LG3G18490 Aethionema arabicum HOM05D007161 ORTHO05D009103 1.6e-17 93.6 145 68.3
AUR62021546 Chenopodium quinoa HOM05D007161 ORTHO05D009103 2.6e-17 92.8 116 80.2
Oeu044879.1 Olea europaea HOM05D007161 ORTHO05D009103 3.5e-17 92.4 91 75.8
SEGI_08112 Sequoiadendron giganteum HOM05D007161 ORTHO05D009103 9.4e-15 84.3 139 62.6
Mapoly0107s0029 Marchantia polymorpha HOM05D007161 ORTHO05D009103 1.2e-14 84.0 139 66.2
AagrBONN_evm.TU.Sc2ySwM_344.2890 Anthoceros agrestis HOM05D007161 ORTHO05D009103 1.6e-14 83.6 120 78.3
SMO139G0085 Selaginella moellendorffii HOM05D007161 ORTHO05D009103 1.6e-14 83.6 124 68.5
Pp3c1_19210 Physcomitrium patens HOM05D007161 ORTHO05D009103 3.6e-14 82.4 67 65.7
Zm00001eb029520 Zea mays HOM05D007161 ORTHO05D009103 4.0e-13 79.0 66 63.6
Os11g0460900 Oryza sativa ssp. japonica HOM05D007161 ORTHO05D009103 4.4e-12 75.5 129 41.9
Peaxi162Scf00009g00010 Petunia axillaris HOM05D007161 ORTHO05D009103 6.3e-11 71.6 52 67.3
Actinidia04818 Actinidia chinensis HOM05D007161 ORTHO05D009103 3.5e-09 65.9 140 62.9


User provided reference genes

Program Settings