Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0183121 Rosa chinensis HOM05D006876 ORTHO05D008708 1.7e-140 502.7 263 100.0
FAN19G1913 Fragaria x ananassa HOM05D006876 ORTHO05D008708 7.9e-109 397.5 239 84.1
FAN28G2491 Fragaria x ananassa HOM05D006876 ORTHO05D008708 4.3e-107 391.7 239 83.3
MD12G1111100 Malus domestica HOM05D006876 ORTHO05D008708 1.8e-89 333.2 239 73.2
Prupe.7G023500 Prunus persica HOM05D006876 ORTHO05D008708 7.0e-89 331.3 244 73.0
MELO3C019167.2 Cucumis melo HOM05D006876 ORTHO05D008708 4.7e-85 318.5 245 70.6
ClCG04G005040 Citrullus lanatus HOM05D006876 ORTHO05D008708 8.8e-84 314.3 249 66.7
CsaV3_4G029000 Cucumis sativus L. HOM05D006876 ORTHO05D008708 4.4e-83 312.0 245 68.6
QL07p015416 Quercus lobata HOM05D006876 ORTHO05D008708 5.5e-78 295.0 241 62.2
PGR142G2444 Punica granatum HOM05D006876 ORTHO05D008708 3.6e-77 292.4 238 61.3
Gohir.D13G092600 Gossypium hirsutum HOM05D006876 ORTHO05D008708 1.4e-76 290.4 240 62.5
Gohir.A13G086570 Gossypium hirsutum HOM05D006876 ORTHO05D008708 3.0e-76 289.3 240 62.5
CiPaw.09G161500 Carya illinoinensis HOM05D006876 ORTHO05D008708 8.8e-76 287.7 199 70.4
CSS0024544 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 2.6e-75 286.2 247 61.5
TWI53G1364 Tripterygium wilfordii HOM05D006876 ORTHO05D008708 2.6e-75 286.2 244 62.3
Dinv13650 Davidia involucrata HOM05D006876 ORTHO05D008708 3.4e-75 285.8 250 61.6
Sed0006068 Sechium edule HOM05D006876 ORTHO05D008708 4.4e-75 285.4 249 60.2
Cfa019902 Carpinus fangiana HOM05D006876 ORTHO05D008708 5.7e-75 285.0 205 68.8
Gorai.010G139600 Gossypium raimondii HOM05D006876 ORTHO05D008708 5.7e-75 285.0 247 61.5
Manes.09G001600 Manihot esculenta HOM05D006876 ORTHO05D008708 7.5e-75 284.6 238 63.0
Cpa.g.sc33.174 Carica papaya HOM05D006876 ORTHO05D008708 1.3e-74 283.9 239 61.5
Potri.006G026300 Populus trichocarpa HOM05D006876 ORTHO05D008708 1.1e-73 280.8 238 62.6
Thecc.05G117700 Theobroma cacao HOM05D006876 ORTHO05D008708 3.1e-73 279.3 244 59.8
arahy.Tifrunner.gnm1.ann1.SXUX32 Arachis hypogaea HOM05D006876 ORTHO05D008708 4.1e-73 278.9 203 66.5
Ah.13g077470 Amaranthus hybridus HOM05D006876 ORTHO05D008708 1.6e-72 276.9 245 58.0
arahy.Tifrunner.gnm1.ann1.U8TZLL Arachis hypogaea HOM05D006876 ORTHO05D008708 1.6e-72 276.9 203 66.0
COL.COLO4_21445 Corchorus olitorius HOM05D006876 ORTHO05D008708 2.0e-72 276.6 242 59.9
Sabra06G0019500 Salix brachista HOM05D006876 ORTHO05D008708 1.3e-71 273.9 238 60.5
Peaxi162Scf00003g05358 Petunia axillaris HOM05D006876 ORTHO05D008708 1.7e-71 273.5 238 63.4
PSO339G4949 Papaver somniferum HOM05D006876 ORTHO05D008708 2.9e-71 272.7 240 57.9
Sopen10g028620 Solanum pennellii HOM05D006876 ORTHO05D008708 2.9e-71 272.7 239 63.2
RhsimUnG0021300 Rhododendron simsii HOM05D006876 ORTHO05D008708 6.5e-71 271.6 257 58.4
THA.LOC104803253 Tarenaya hassleriana HOM05D006876 ORTHO05D008708 6.5e-71 271.6 214 64.5
Solyc10g076930.2 Solanum lycopersicum HOM05D006876 ORTHO05D008708 8.6e-71 271.2 240 62.1
CANSAT78G2074 Cannabis sativa HOM05D006876 ORTHO05D008708 1.1e-70 270.8 238 59.7
PGSC0003DMG400007191 Solanum tuberosum HOM05D006876 ORTHO05D008708 1.1e-70 270.8 253 60.1
EL10Ac3g07376 Beta vulgaris HOM05D006876 ORTHO05D008708 1.9e-70 270.0 244 59.0
FvH4_1g29600 Fragaria vesca HOM05D006876 ORTHO05D008708 2.5e-70 269.6 169 81.1
PSO384G4569 Papaver somniferum HOM05D006876 ORTHO05D008708 4.2e-70 268.9 240 61.2
Lj1g0024709 Lotus japonicus HOM05D006876 ORTHO05D008708 5.5e-70 268.5 201 67.7
Lalb_Chr24g0400801 Lupinus albus HOM05D006876 ORTHO05D008708 7.2e-70 268.1 201 66.2
Atru.chr8.919 Acer truncatum HOM05D006876 ORTHO05D008708 9.5e-70 267.7 238 60.5
Eucgr.K01704 Eucalyptus grandis HOM05D006876 ORTHO05D008708 9.5e-70 267.7 246 59.8
Nitab4.5_0000123g0090 Nicotiana tabacum HOM05D006876 ORTHO05D008708 2.1e-69 266.5 237 60.3
Nitab4.5_0002131g0070 Nicotiana tabacum HOM05D006876 ORTHO05D008708 4.7e-69 265.4 245 60.8
Ciclev10012641m.g Citrus clementina HOM05D006876 ORTHO05D008708 6.1e-69 265.0 241 58.5
Hma1.2p1_0694F.1_g204340 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 8.0e-69 264.6 265 54.0
Sc19g0007790 Simmondsia chinensis HOM05D006876 ORTHO05D008708 1.0e-68 264.2 236 57.2
vmacro07595 Vaccinium macrocarpon HOM05D006876 ORTHO05D008708 1.8e-68 263.5 273 55.7
Duzib114G0933 Durio zibethinus HOM05D006876 ORTHO05D008708 2.3e-68 263.1 241 57.3
GSVIVG01025828001 Vitis vinifera HOM05D006876 ORTHO05D008708 3.0e-68 262.7 238 60.1
Hund24486 Selenicereus undatus HOM05D006876 ORTHO05D008708 6.8e-68 261.5 244 57.0
Medtr7g088040 Medicago truncatula HOM05D006876 ORTHO05D008708 8.9e-68 261.2 205 64.9
Haze_20349 Corylus avellana HOM05D006876 ORTHO05D008708 2.0e-67 260.0 236 57.6
MSTRG.10760 Avicennia marina HOM05D006876 ORTHO05D008708 2.6e-67 259.6 248 56.9
AT3G56820 Arabidopsis thaliana HOM05D006876 ORTHO05D008708 7.5e-67 258.1 208 64.9
Migut.K00190 Erythranthe guttata HOM05D006876 ORTHO05D008708 2.8e-66 256.1 204 62.7
AL5G38200 Arabidopsis lyrata HOM05D006876 ORTHO05D008708 8.3e-66 254.6 206 65.0
MBI19_g10813_MAGBIO Magnolia biondii HOM05D006876 ORTHO05D008708 1.1e-65 254.2 237 55.3
CARHR166970 Cardamine hirsuta HOM05D006876 ORTHO05D008708 1.8e-65 253.4 206 63.6
Lsat_1_v5_gn_6_24200 Lactuca sativa HOM05D006876 ORTHO05D008708 2.4e-65 253.1 245 55.9
SGA_v2.0_scaffold123G33492 Striga asiatica HOM05D001269 ORTHO05D001083 3.1e-65 252.7 260 55.4
AUR62020968 Chenopodium quinoa HOM05D006876 ORTHO05D008708 7.0e-65 251.5 236 54.7
Cc06_g21190 Coffea canephora HOM05D006876 ORTHO05D008708 7.0e-65 251.5 200 62.5
Carub.0005s2355 Capsella rubella HOM05D006876 ORTHO05D008708 9.2e-65 251.1 207 62.3
Aa31LG10G11670 Aethionema arabicum HOM05D006876 ORTHO05D008708 2.0e-64 250.0 203 62.6
BcaC07g40117 Brassica carinata HOM05D006876 ORTHO05D008708 3.5e-64 249.2 203 61.6
BcaC07g39992 Brassica carinata HOM05D006876 ORTHO05D008708 5.9e-64 248.4 248 52.4
BolC8t50823H Brassica oleracea HOM05D006876 ORTHO05D008708 1.0e-63 247.7 201 60.7
C08p32050 Brassica napus HOM05D006876 ORTHO05D008708 1.7e-63 246.9 248 52.4
Os01g0810200 Oryza sativa ssp. japonica HOM05D006876 ORTHO05D008708 2.3e-63 246.5 237 53.2
SalBow1G4764 Salvia bowleyana HOM05D006876 ORTHO05D008708 2.3e-63 246.5 245 55.5
Sp5g05770 Schrenkiella parvula HOM05D006876 ORTHO05D008708 2.9e-63 246.1 207 60.9
Thhalv10006232m.g Eutrema salsugineum HOM05D006876 ORTHO05D008708 5.0e-63 245.4 206 60.7
A09p49640 Brassica napus HOM05D006876 ORTHO05D008708 8.6e-63 244.6 208 59.6
BraA09t40417Z Brassica rapa HOM05D006876 ORTHO05D008708 8.6e-63 244.6 208 59.6
Aqoxy1G01501 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 3.3e-62 242.7 233 54.9
Nn7g37203 Nelumbo nucifera HOM05D006876 ORTHO05D008708 3.3e-62 242.7 211 63.5
Phvul.001G101300 Phaseolus vulgaris HOM05D006876 ORTHO05D008708 3.3e-62 242.7 207 59.4
Migut.K00192 Erythranthe guttata HOM05D006876 ORTHO05D008708 4.3e-62 242.3 194 62.4
Hund24492 Selenicereus undatus HOM05D006876 ORTHO05D008708 8.0e-61 238.0 202 59.4
Zm00001eb150270 Zea mays HOM05D006876 ORTHO05D008708 1.4e-60 237.3 201 57.2
arahy.Tifrunner.gnm1.ann1.R6YTNA Arachis hypogaea HOM05D006876 ORTHO05D008708 2.3e-60 236.5 202 59.9
TAR623G1567 Trochodendron aralioides HOM05D006876 ORTHO05D008708 3.0e-60 236.1 152 69.7
Glyma.19G122400 Glycine max HOM05D006876 ORTHO05D008708 7.5e-59 231.5 200 56.5
Glyma.03G003700 Glycine max HOM05D006876 ORTHO05D008708 2.2e-58 229.9 198 58.1
unitig_899.g15477 Utricularia gibba HOM05D006876 ORTHO05D008708 6.4e-58 228.4 243 51.9
VMungo1383G0045 Vigna mungo HOM05D006876 ORTHO05D008708 1.1e-57 227.6 207 57.0
Psat3g083640 Pisum sativum HOM05D006876 ORTHO05D008708 1.5e-54 217.2 156 66.0
Aqoxy1G01505 Aquilegia oxysepala HOM05D006876 ORTHO05D008708 1.2e-48 197.6 130 68.5
Hma1.2p1_0694F.1_g204350 Hydrangea macrophylla HOM05D006876 ORTHO05D008708 6.8e-44 181.8 109 74.3
ATR1096G134 Amborella trichopoda HOM05D006876 ORTHO05D008708 2.0e-43 180.3 248 44.0
Lj4A828G46 Lonicera japonica HOM05D006876 ORTHO05D008708 2.2e-42 176.8 112 68.8
DCAR_020618 Daucus carota HOM05D006876 ORTHO05D008708 2.9e-42 176.4 113 70.8
Lalb_Chr02g0157641 Lupinus albus HOM05D006876 ORTHO05D008708 1.1e-41 174.5 145 61.4
CSS0021314 Camellia sinensis var. sinensis HOM05D006876 ORTHO05D008708 6.0e-40 168.7 109 71.6
SEGI_40976 Sequoiadendron giganteum HOM05D006876 ORTHO05D008708 5.1e-39 165.6 136 52.9
Oeu032953.2 Olea europaea HOM05D006876 ORTHO05D008708 8.6e-39 164.9 224 43.8
ECA233G0065 Erigeron canadensis HOM05D000444 ORTHO05D000489 1.5e-38 164.1 110 67.3
QL05p001451 Quercus lobata HOM05D006876 ORTHO05D008708 8.9e-36 154.8 95 74.7
arahy.Tifrunner.gnm1.ann1.S4H51W Arachis hypogaea HOM05D006876 ORTHO05D008708 4.4e-35 152.5 131 57.3
Actinidia37859 Actinidia chinensis HOM05D006876 ORTHO05D008708 1.9e-30 137.1 87 72.4
arahy.Tifrunner.gnm1.ann1.QI3NWI Arachis hypogaea HOM05D006876 ORTHO05D008708 8.1e-29 131.7 77 75.3
arahy.Tifrunner.gnm1.ann1.8Z6XIB Arachis hypogaea HOM05D006876 ORTHO05D008708 6.9e-28 128.6 76 75.0
arahy.Tifrunner.gnm1.ann1.ERVJ4V Arachis hypogaea HOM05D006876 ORTHO05D008708 3.2e-25 119.8 182 37.9
CBR_g17867 Chara braunii HOM05D006876 ORTHO05D008708 3.3e-22 109.8 143 40.6
QL05p001731 Quercus lobata HOM05D006876 ORTHO05D008708 1.6e-21 107.5 68 72.1
QL05p085390 Quercus lobata HOM05D006876 ORTHO05D008708 1.6e-21 107.5 68 72.1
Ca_08331_v3 Cicer arietinum L. HOM05D006876 ORTHO05D008708 5.8e-19 99.0 67 71.6
DCAR_020619 Daucus carota HOM05D006876 ORTHO05D008708 4.9e-18 95.9 149 42.3
arahy.Tifrunner.gnm1.ann1.Q5BN79 Arachis hypogaea HOM05D006876 ORTHO05D008708 2.4e-17 93.6 58 74.1
Oeu007164.1 Olea europaea HOM05D006876 ORTHO05D008708 6.0e-16 89.0 71 57.7
Oeu039192.1 Olea europaea HOM05D006876 ORTHO05D008708 1.1e-14 84.7 132 42.4
MCO02G060 Micromonas commoda HOM05D006876 ORTHO05D008708 8.1e-13 78.6 125 34.4
Glyma.10G143650 Glycine max HOM05D006876 ORTHO05D008708 1.7e-10 70.9 43 67.4
HPP92_016900 Vanilla planifolia HOM05D006876 ORTHO05D008708 2.1e-08 63.9 141 37.6
C06p23790 Brassica napus HOM05D006876 ORTHO05D040197 3.9e-07 59.7 54 59.3
BolC6t37548H Brassica oleracea HOM05D006876 ORTHO05D040197 3.9e-07 59.7 54 59.3


User provided reference genes

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