Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 2.2e-168 595.5 298 100.0
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 3.5e-153 545.0 299 90.6
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 4.3e-151 538.1 299 90.3
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-141 506.9 299 86.6
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 6.8e-141 504.2 299 85.6
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 1.6e-137 493.0 299 82.6
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 4.0e-125 451.8 297 77.1
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.7e-123 446.4 298 75.5
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.2e-121 440.3 298 73.5
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 2.3e-120 436.0 298 73.5
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 1.1e-119 433.7 298 74.2
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-119 432.6 298 72.8
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.5e-119 432.6 298 72.8
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 4.7e-118 428.3 298 73.8
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 4.7e-118 428.3 298 73.5
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 6.2e-118 427.9 298 72.1
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 8.1e-118 427.6 286 75.5
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 8.1e-118 427.6 298 71.5
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.1e-117 427.2 298 73.8
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.8e-117 426.4 298 72.5
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.8e-117 426.4 298 71.1
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 4.0e-117 425.2 298 72.1
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 5.2e-117 424.9 299 72.9
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 6.8e-117 424.5 300 72.0
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 8.9e-117 424.1 298 72.1
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.6e-116 422.5 298 71.5
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 5.8e-116 421.4 298 72.1
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 9.9e-116 420.6 298 72.1
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 2.2e-115 419.5 298 69.8
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 2.9e-115 419.1 300 71.7
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 2.9e-115 419.1 255 82.4
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 2.9e-115 419.1 286 73.4
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.8e-115 418.7 298 71.8
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 3.8e-115 418.7 298 71.1
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 4.9e-115 418.3 298 70.8
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 5.4e-114 414.8 255 81.6
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.1e-114 414.5 298 69.8
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 2.7e-113 412.5 300 70.0
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.7e-113 412.5 298 68.8
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 2.7e-113 412.5 292 70.5
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 6.0e-113 411.4 298 70.5
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 7.8e-113 411.0 298 69.1
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.0e-112 410.6 296 69.3
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 1.7e-112 409.8 294 70.7
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 5.1e-112 408.3 298 69.1
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 6.6e-112 407.9 298 66.8
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 6.6e-112 407.9 298 69.1
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 6.6e-112 407.9 296 68.6
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 6.6e-112 407.9 298 69.8
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 1.1e-111 407.1 298 66.8
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 1.1e-111 407.1 299 68.9
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.1e-111 407.1 324 65.7
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 2.5e-111 406.0 299 69.2
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.5e-111 406.0 279 71.7
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 3.3e-111 405.6 298 67.4
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 3.3e-111 405.6 279 71.3
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 4.3e-111 405.2 299 69.2
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 5.6e-111 404.8 301 67.8
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 9.6e-111 404.1 298 67.8
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 1.3e-110 403.7 298 67.1
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 1.3e-110 403.7 298 67.1
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 1.3e-110 403.7 298 67.1
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.1e-110 402.9 302 68.9
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.1e-110 402.9 298 68.8
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 2.1e-110 402.9 230 82.6
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 3.6e-110 402.1 298 67.1
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 4.8e-110 401.7 281 70.5
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 8.1e-110 401.0 296 67.9
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 1.1e-109 400.6 313 66.5
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.8e-109 399.8 297 67.3
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 2.4e-109 399.4 298 67.1
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 5.3e-109 398.3 298 66.4
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 9.0e-109 397.5 295 66.1
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 9.0e-109 397.5 272 74.6
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 9.0e-109 397.5 297 67.0
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 3.4e-108 395.6 304 67.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 3.4e-108 395.6 335 63.6
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 7.6e-108 394.4 298 67.8
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 1.7e-107 393.3 292 68.8
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 2.2e-107 392.9 255 74.5
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.9e-107 392.5 301 67.4
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.9e-107 392.5 300 67.3
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 4.9e-107 391.7 297 68.0
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 6.4e-107 391.3 300 67.7
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 8.4e-107 391.0 297 66.3
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 1.1e-106 390.6 248 77.0
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 1.9e-106 389.8 311 65.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 1.9e-106 389.8 298 67.4
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 3.2e-106 389.0 244 77.0
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 1.6e-105 386.7 302 66.2
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.6e-105 386.7 296 65.9
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 2.1e-105 386.3 298 67.4
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 3.5e-105 385.6 300 65.0
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.3e-104 383.6 333 61.9
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.9e-104 382.1 285 68.8
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.1e-103 380.6 256 73.8
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 2.5e-103 379.4 246 74.0
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 7.4e-103 377.9 243 76.1
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 1.3e-102 377.1 299 65.9
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 1.3e-102 377.1 234 76.5
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.8e-102 375.2 368 55.7
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 9.9e-100 367.5 348 57.5
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.2e-98 362.5 221 79.6
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.2e-97 360.5 271 66.8
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.6e-97 360.1 286 65.0
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.9e-96 355.5 303 63.0
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 5.1e-96 355.1 249 70.7
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 8.7e-96 354.4 258 70.9
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 8.7e-96 354.4 248 70.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 1.5e-95 353.6 296 63.9
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 1.9e-95 353.2 298 62.4
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 1.3e-94 350.5 222 75.2
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 2.9e-91 339.3 298 61.7
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 9.3e-90 334.3 265 64.5
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 2.1e-89 333.2 262 64.9
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 8.2e-86 321.2 223 68.2
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 8.2e-86 321.2 256 64.1
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 6.9e-85 318.2 225 67.1
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 5.0e-83 312.0 257 65.0
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 6.5e-83 311.6 222 67.6
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.6e-81 307.0 210 70.0
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.6e-81 305.8 205 72.2
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 9.7e-79 297.7 276 56.2
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 1.2e-68 264.2 247 52.6
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 8.5e-67 258.1 218 56.9
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 1.4e-66 257.3 230 57.4
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.9e-66 256.9 426 39.4
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 3.2e-66 256.1 289 51.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 4.5e-60 235.7 142 81.7
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.9e-59 233.0 221 52.0
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 2.9e-59 233.0 221 52.0
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 2.3e-56 223.4 142 76.8
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 2.8e-54 216.5 251 45.4
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.1e-53 214.5 133 78.2
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 1.6e-52 210.7 147 67.3
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 3.5e-52 209.5 249 44.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.0e-51 208.0 250 44.0
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.5e-50 203.4 157 68.8
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.1e-42 177.9 165 58.2
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.5e-42 176.8 112 77.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.4e-40 171.0 167 54.5
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.5e-36 156.0 99 77.8
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.9e-34 150.6 108 64.8
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 2.1e-33 147.1 97 76.3
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 2.9e-30 136.7 122 57.4
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 3.3e-26 123.2 158 48.1
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 9.5e-26 121.7 156 50.6
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.2e-25 121.3 101 65.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 1.6e-25 120.9 92 67.4
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 1.5e-23 114.4 67 79.1
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 2.6e-15 87.0 121 44.6
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 7.6e-07 58.9 181 29.8


User provided reference genes

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