Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 2.2e-105 385.6 187 100.0
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 3.2e-96 355.1 181 97.2
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.6e-95 352.8 181 96.7
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.6e-95 352.8 181 96.7
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.0e-94 350.1 181 96.1
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.4e-91 339.0 175 94.9
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.4e-91 339.0 175 94.9
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 6.5e-89 330.9 181 89.5
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.2e-82 310.1 178 85.4
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 2.0e-82 309.3 173 87.3
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 2.1e-79 299.3 174 84.5
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.6e-79 298.1 179 80.4
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 1.0e-78 297.0 182 80.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.8e-78 296.2 186 79.6
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 5.1e-78 294.7 176 84.7
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 5.1e-78 294.7 176 84.7
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 8.8e-78 293.9 176 81.8
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.1e-77 293.5 174 83.3
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 1.1e-77 293.5 181 80.7
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 1.5e-77 293.1 180 79.4
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.5e-77 292.4 176 81.2
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 4.3e-77 291.6 161 87.0
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 2.8e-76 288.9 182 78.6
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 8.2e-76 287.3 176 79.5
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.1e-75 287.0 162 85.2
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 1.8e-75 286.2 173 81.5
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 1.8e-75 286.2 173 82.1
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 2.4e-75 285.8 173 82.7
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 3.1e-75 285.4 176 80.1
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.1e-75 285.4 173 81.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 5.3e-75 284.6 176 80.1
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 6.9e-75 284.3 176 78.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 6.9e-75 284.3 173 81.5
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 9.1e-75 283.9 163 84.0
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 9.1e-75 283.9 175 78.9
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 1.5e-74 283.1 181 79.0
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 2.6e-74 282.3 171 78.4
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.6e-74 282.3 174 77.0
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 3.4e-74 282.0 171 78.4
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 3.4e-74 282.0 174 81.6
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.5e-74 281.6 175 79.4
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 4.5e-74 281.6 175 78.9
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 7.7e-74 280.8 164 82.9
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 7.7e-74 280.8 164 82.9
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.0e-73 280.4 177 79.1
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 1.0e-73 280.4 176 77.8
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 1.0e-73 280.4 164 82.9
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.3e-73 280.0 162 83.3
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 1.7e-73 279.6 176 77.3
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 1.7e-73 279.6 175 78.3
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 2.9e-73 278.9 174 76.4
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 3.8e-73 278.5 174 79.9
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.8e-73 278.5 163 83.4
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 5.0e-73 278.1 173 78.6
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 6.5e-73 277.7 178 77.5
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 6.5e-73 277.7 180 76.7
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 6.5e-73 277.7 171 77.2
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 8.5e-73 277.3 171 77.2
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 8.5e-73 277.3 180 75.6
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.4e-72 276.6 173 80.9
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 1.9e-72 276.2 171 78.4
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 1.9e-72 276.2 171 78.4
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.9e-72 276.2 158 84.8
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 4.2e-72 275.0 171 77.8
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 4.2e-72 275.0 171 76.0
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 7.2e-72 274.2 170 77.6
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 7.2e-72 274.2 182 73.6
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 7.2e-72 274.2 181 77.3
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 2.7e-71 272.3 158 84.2
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 3.6e-71 271.9 168 79.2
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 3.6e-71 271.9 173 76.9
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 4.7e-71 271.6 182 74.7
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 6.1e-71 271.2 176 79.0
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 6.1e-71 271.2 180 75.0
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 3.9e-70 268.5 173 75.7
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 5.1e-70 268.1 175 74.9
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.6e-69 265.8 178 74.7
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 8.2e-68 260.8 167 75.4
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 1.5e-66 256.5 179 72.1
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 1.5e-66 256.5 175 71.4
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 2.6e-66 255.8 159 75.5
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.9e-64 249.6 141 86.5
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.4e-64 247.3 141 85.8
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 3.6e-63 245.4 149 77.2
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 6.1e-63 244.6 156 76.3
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 8.0e-63 244.2 155 77.4
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.3e-62 242.7 174 73.0
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 9.7e-61 237.3 168 70.8
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 1.3e-60 236.9 179 60.9
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 2.2e-60 236.1 167 68.3
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.1e-59 233.8 154 75.3
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 7.0e-59 231.1 187 62.0
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.2e-58 230.3 185 65.9
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.7e-57 226.5 127 85.0
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 2.2e-57 226.1 179 63.1
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 1.5e-56 223.4 149 75.8
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 3.2e-56 222.2 170 64.1
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.8e-54 216.5 178 59.6
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 3.0e-54 215.7 155 69.7
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.8e-53 210.7 135 75.6
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.7e-52 209.9 124 79.0
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 8.3e-52 207.6 123 84.6
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 1.8e-51 206.5 124 78.2
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 5.4e-51 204.9 125 80.0
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 9.1e-51 204.1 130 76.9
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 8.5e-49 197.6 112 80.4
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.3e-46 189.5 120 75.8
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 3.0e-46 189.1 178 59.0
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.2e-42 177.2 106 78.3
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 1.6e-42 176.8 154 53.9
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 1.6e-39 166.8 125 68.0
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 8.0e-39 164.5 190 45.8
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.2e-29 134.0 85 72.9
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 8.3e-20 101.3 77 66.2
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.6e-15 87.0 53 83.0
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 5.6e-08 62.0 54 55.6


User provided reference genes

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