Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 0.0e+00 1405.6 746 100.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 0.0e+00 1231.9 680 90.1
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1214.1 678 89.4
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1171.8 724 82.6
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 0.0e+00 1084.7 676 82.1
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 5.1e-312 1073.9 680 77.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 4.4e-306 1054.3 683 76.6
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.4e-259 899.8 686 64.6
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 6.7e-254 880.9 685 64.1
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 3.2e-248 862.1 687 63.3
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 7.2e-248 860.9 683 62.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 6.7e-246 854.4 688 62.2
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.7e-241 839.7 683 60.8
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 1.7e-236 823.2 682 59.7
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 2.6e-234 815.8 682 60.1
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 7.7e-234 814.3 680 59.3
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 7.7e-234 814.3 650 62.2
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 1.0e-233 813.9 700 59.3
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 5.0e-233 811.6 679 60.5
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 6.5e-233 811.2 680 59.9
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 2.5e-232 809.3 680 59.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.1e-231 806.2 681 59.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.0e-230 802.4 679 58.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.1e-229 800.4 695 58.7
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.1e-229 800.4 684 57.7
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 3.3e-229 798.9 685 57.8
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.3e-229 798.9 679 59.2
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.7e-228 796.6 688 58.6
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.8e-227 793.1 690 57.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.1e-227 792.3 693 58.6
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 2.2e-225 786.2 692 58.2
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 6.5e-225 784.6 692 58.5
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.0e-221 773.1 691 56.3
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.8e-220 769.2 635 60.0
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 6.3e-220 768.1 697 56.2
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.0e-217 760.8 832 50.6
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 7.5e-213 744.6 690 56.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 2.2e-212 743.0 696 54.6
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 3.1e-211 739.2 684 55.8
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 1.6e-210 736.9 687 56.5
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.5e-210 735.7 689 54.0
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.5e-210 735.3 677 53.2
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 1.7e-209 733.4 697 55.1
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 2.3e-209 733.0 686 53.4
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.5e-208 729.6 697 54.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 7.2e-208 728.0 684 53.2
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.6e-207 726.9 695 52.4
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 2.1e-207 726.5 700 51.7
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 3.6e-207 725.7 685 53.3
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 4.7e-207 725.3 686 53.4
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 2.0e-205 719.9 696 52.9
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 2.6e-205 719.5 694 52.2
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 2.6e-205 719.5 690 52.2
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.8e-205 717.6 686 55.8
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.3e-204 717.2 689 52.5
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 3.7e-204 715.7 687 52.3
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 4.9e-204 715.3 691 52.0
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 1.5e-200 703.7 686 53.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.9e-200 703.4 705 51.1
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 5.6e-200 701.8 719 49.9
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.6e-200 701.8 714 51.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.2e-199 700.7 695 52.7
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 2.3e-198 696.4 699 52.9
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-197 694.1 688 54.4
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.2e-197 694.1 699 52.5
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 3.4e-197 692.6 717 51.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 4.4e-197 692.2 681 52.1
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 4.4e-197 692.2 685 52.0
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 7.5e-197 691.4 750 48.8
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 3.7e-196 689.1 695 51.2
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 3.5e-194 682.6 648 52.9
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 6.6e-193 678.3 692 52.0
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.4e-189 666.0 694 50.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.1e-187 661.0 681 49.6
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 3.4e-181 639.4 684 49.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 2.4e-179 633.3 634 53.2
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 9.2e-179 631.3 702 47.4
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 1.0e-177 627.9 671 51.4
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 3.9e-177 625.9 600 52.8
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 8.9e-174 614.8 738 45.3
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 7.1e-171 605.1 684 47.4
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.8e-167 593.2 701 46.8
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.9e-164 583.2 730 45.1
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 3.8e-164 582.8 681 45.2
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 1.0e-148 531.6 677 43.7
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.1e-147 528.1 579 49.9
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.7e-143 513.1 428 60.7
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-137 494.2 672 40.3
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 3.9e-137 493.0 449 54.6
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 7.4e-136 488.8 444 56.3
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.6e-133 480.3 565 45.8
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 1.0e-129 468.4 639 41.6
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 2.2e-127 460.7 473 51.4
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.4e-126 458.0 371 59.8
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-125 454.1 315 72.7
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 4.5e-117 426.4 463 51.6
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 3.8e-116 423.3 621 39.9
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.6e-101 374.8 581 37.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 8.8e-97 359.0 539 37.8
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 8.6e-92 342.4 260 62.7
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.0e-80 304.7 342 47.1
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 2.4e-78 297.7 267 58.4
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 7.8e-69 266.2 197 67.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.1e-67 262.3 271 52.0
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 5.4e-62 243.4 292 45.5
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 4.7e-58 230.3 263 45.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.2e-58 229.9 211 52.1
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 3.1e-57 227.6 246 45.9
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 3.5e-53 214.2 496 31.2
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.3e-52 211.5 205 54.6
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.8e-50 203.8 312 40.7
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.1e-46 192.6 232 45.3
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 1.6e-37 162.2 155 49.0
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 6.0e-37 160.2 156 54.5
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-36 158.7 295 36.6
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 2.5e-35 154.8 168 47.0
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.4e-33 149.1 305 32.1
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.8e-32 143.7 326 31.9
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.9e-31 140.6 194 41.2
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.9e-28 131.0 142 41.5
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-27 129.0 172 43.6
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 4.3e-27 127.5 86 62.8
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.1e-26 125.2 213 37.1
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 9.0e-25 119.8 129 51.2
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.9e-23 114.8 223 35.4
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 3.8e-23 114.4 438 25.6
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.0e-23 114.0 264 32.6
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 8.5e-23 113.2 477 24.9
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 1.4e-22 112.5 100 59.0
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-22 112.1 152 45.4
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 1.8e-20 105.5 147 40.8
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.5e-19 101.7 420 27.6
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-19 101.3 224 32.1
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.3e-19 101.3 282 31.6
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 1.3e-18 99.4 75 61.3
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-18 98.2 131 45.8
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.1e-17 94.7 179 30.7
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 3.4e-16 91.3 134 40.3
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.7e-15 89.0 88 52.3
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.5e-15 87.0 88 52.3
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-14 85.9 93 50.5
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.2e-13 82.8 129 41.9
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 6.1e-13 80.5 81 49.4
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-12 79.7 87 49.4
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 3.0e-12 78.2 93 48.4
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 1.5e-11 75.9 58 55.2
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 2.6e-11 75.1 85 48.2
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.3e-11 74.7 56 58.9
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.4e-11 74.3 88 47.7
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.7e-10 72.4 169 30.8
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.2e-10 72.0 50 68.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-10 72.0 93 45.2
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 8.2e-10 70.1 78 46.2
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 9.1e-09 66.6 164 33.5
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.2e-08 66.2 53 52.8
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.1e-06 59.7 42 59.5
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 1.1e-06 59.7 34 73.5
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.4e-06 59.3 42 59.5
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 7.2e-06 57.0 47 57.4


User provided reference genes

Program Settings