Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 2.1e-103 379.0 192 100.0
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 3.8e-100 368.2 192 96.9
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 7.1e-99 364.0 192 96.4
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 2.7e-98 362.1 192 95.8
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 1.2e-85 320.1 192 85.4
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 2.9e-84 315.5 192 85.4
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 1.2e-82 310.1 192 84.9
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 1.5e-72 276.6 192 74.5
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 1.9e-72 276.2 193 74.1
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.4e-70 270.0 185 75.1
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 1.4e-70 270.0 185 75.1
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.4e-67 260.0 185 70.8
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 2.5e-67 259.2 192 72.9
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 3.2e-67 258.8 192 70.8
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 9.3e-67 257.3 185 70.3
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 2.7e-66 255.8 192 69.8
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 3.9e-65 251.9 193 68.4
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 5.1e-65 251.5 185 71.4
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 6.7e-65 251.1 192 69.8
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 6.7e-65 251.1 189 67.2
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 8.7e-65 250.8 187 68.4
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 1.9e-64 249.6 189 66.1
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 2.5e-64 249.2 186 67.7
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 4.3e-64 248.4 185 71.4
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 7.4e-64 247.7 187 68.4
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 9.7e-64 247.3 185 71.4
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 2.2e-63 246.1 187 68.4
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 2.2e-63 246.1 192 68.2
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 3.7e-63 245.4 192 68.8
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 1.4e-62 243.4 187 67.9
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 2.4e-62 242.7 124 96.0
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 4.1e-62 241.9 187 67.9
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 1.2e-61 240.4 185 67.0
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 2.6e-61 239.2 193 66.8
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 3.4e-61 238.8 192 67.2
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 4.5e-61 238.4 192 65.1
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 5.9e-61 238.0 192 67.2
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 5.9e-61 238.0 192 66.1
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 1.3e-60 236.9 192 65.6
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 5.0e-60 235.0 185 66.5
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 8.5e-60 234.2 192 66.1
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.1e-59 233.8 184 66.8
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 1.4e-59 233.4 184 66.8
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 1.4e-59 233.4 184 66.8
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 3.2e-59 232.3 189 66.7
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 4.2e-59 231.9 185 63.8
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 4.2e-59 231.9 187 65.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 9.4e-59 230.7 195 64.6
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.2e-58 230.3 185 64.9
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 2.1e-58 229.6 180 66.7
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 2.7e-58 229.2 192 65.6
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 3.6e-58 228.8 192 64.1
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 3.6e-58 228.8 191 67.0
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 3.6e-58 228.8 185 63.8
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 4.6e-58 228.4 192 64.1
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 6.1e-58 228.0 129 83.7
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 2.3e-57 226.1 192 66.1
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 3.0e-57 225.7 192 66.1
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 8.8e-57 224.2 192 63.0
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 1.1e-56 223.8 194 63.9
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 1.5e-56 223.4 192 60.9
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 1.5e-56 223.4 192 63.5
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 4.3e-56 221.9 156 74.4
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 5.7e-56 221.5 190 63.2
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 1.3e-55 220.3 156 71.2
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 2.2e-55 219.5 165 69.7
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 2.8e-55 219.2 194 63.9
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 3.7e-55 218.8 188 61.7
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 3.7e-55 218.8 188 61.7
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 1.1e-54 217.2 185 64.3
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 3.1e-54 215.7 197 59.9
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 3.4e-53 212.2 185 62.2
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 5.0e-52 208.4 160 66.9
MBI02_g23462_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 3.2e-51 205.7 189 57.1
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 7.2e-51 204.5 191 60.2
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.6e-50 203.4 173 62.4
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 6.1e-50 201.4 113 85.0
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 3.9e-49 198.7 169 59.8
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 6.7e-49 198.0 118 82.2
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 2.2e-47 193.0 193 56.5
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 2.2e-47 193.0 186 57.0
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 1.8e-46 189.9 186 57.5
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 1.8e-46 189.9 186 57.5
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 2.4e-46 189.5 189 53.4
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 4.1e-46 188.7 186 57.5
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 9.1e-46 187.6 191 56.0
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 9.1e-46 187.6 186 57.5
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 9.1e-46 187.6 186 57.5
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 1.2e-45 187.2 186 57.5
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 3.4e-45 185.7 190 55.8
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 5.9e-45 184.9 190 57.4
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 1.0e-44 184.1 186 56.5
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 1.7e-44 183.3 186 56.5
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 2.9e-44 182.6 188 57.4
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 2.9e-44 182.6 188 57.4
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 5.0e-44 181.8 186 56.5
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 8.5e-44 181.0 191 56.0
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 1.1e-43 180.6 188 55.3
Aa31LG7G3520 Aethionema arabicum HOM05D007067 ORTHO05D008864 3.6e-42 175.6 115 71.3
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 4.7e-42 175.3 150 59.3
Zm00001eb254450 Zea mays HOM05D007067 ORTHO05D008864 3.9e-41 172.2 139 64.0
Os02g0744000 Oryza sativa ssp. japonica HOM05D007067 ORTHO05D008864 6.3e-39 164.9 134 63.4
Rhsim08G0153500 Rhododendron simsii HOM05D007067 ORTHO05D008864 3.7e-31 139.0 185 49.7
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 2.0e-29 133.3 119 59.7
SEGI_39094 Sequoiadendron giganteum HOM05D007067 ORTHO05D008864 2.7e-29 132.9 136 54.4
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 2.9e-28 129.4 97 61.9
CBR_g30507 Chara braunii HOM05D007067 ORTHO05D008864 8.6e-20 101.3 94 54.3
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 8.6e-20 101.3 115 50.4
Mapoly0149s0008 Marchantia polymorpha HOM05D007067 ORTHO05D008864 3.6e-18 95.9 103 45.6
Haze_07309 Corylus avellana HOM05D007067 ORTHO05D008864 3.0e-17 92.8 192 41.7
Pp3c16_3930 Physcomitrium patens HOM05D007067 ORTHO05D008864 1.5e-16 90.5 91 53.8
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.1e-10 70.1 54 74.1
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 4.7e-10 68.9 45 66.7
Rhsim08G0168600 Rhododendron simsii HOM05D000306 ORTHO05D023263 4.9e-07 58.9 180 29.4


User provided reference genes

Program Settings