Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 4.1e-47 191.0 95 100.0
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 2.8e-40 168.3 95 87.4
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 4.1e-39 164.5 95 90.5
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 6.9e-39 163.7 95 89.5
FAN04G0033 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.2e-32 142.1 89 85.4
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.3e-29 132.9 94 69.1
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.7e-29 132.5 95 66.3
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 3.8e-29 131.3 95 68.4
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.5e-28 129.4 95 65.3
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 3.2e-28 128.3 93 67.7
FvH4_5g14931 Fragaria vesca HOM05D007096 ORTHO05D008288 5.5e-28 127.5 85 80.0
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 4.7e-27 124.4 96 65.6
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 8.0e-27 123.6 90 63.3
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 1.4e-26 122.9 95 64.2
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.0e-26 121.7 96 63.5
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 5.2e-26 120.9 96 64.6
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 6.7e-26 120.6 96 62.5
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 3.3e-25 118.2 95 57.9
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 4.4e-25 117.9 95 60.0
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 4.4e-25 117.9 94 62.8
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 9.7e-25 116.7 96 60.4
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.3e-24 114.0 86 67.4
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 8.2e-24 113.6 96 60.4
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 8.2e-24 113.6 86 66.3
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 9.1e-23 110.2 87 64.4
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.6e-22 109.4 86 64.0
Lalb_Chr12g0196861 Lupinus albus HOM05D007096 ORTHO05D008288 2.7e-22 108.6 98 61.2
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 4.5e-22 107.8 96 57.3
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.7e-21 105.9 86 57.0
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 3.8e-21 104.8 84 61.9
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 6.5e-21 104.0 81 64.2
Sed0025401 Sechium edule HOM05D007096 ORTHO05D008288 8.5e-21 103.6 96 58.3
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 5.5e-20 100.9 86 59.3
MELO3C001984.2 Cucumis melo HOM05D007096 ORTHO05D008288 2.7e-19 98.6 87 56.3
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 8.0e-19 97.1 86 59.3
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.0e-18 96.7 90 53.3
Glyma.05G026700 Glycine max HOM05D007096 ORTHO05D008288 1.4e-18 96.3 93 55.9
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.4e-18 96.3 92 55.4
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.8e-18 95.9 90 52.2
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 1.8e-18 95.9 91 52.7
Sed0019012 Sechium edule HOM05D007096 ORTHO05D008288 5.2e-18 94.4 104 50.0
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 6.8e-18 94.0 90 52.2
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 1.3e-16 89.7 92 50.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 8.3e-16 87.0 85 57.6
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 1.4e-15 86.3 87 51.7
Medtr3g037730 Medicago truncatula HOM05D007096 ORTHO05D008288 7.0e-15 84.0 93 48.4
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 1.2e-14 83.2 71 62.0
Sed0011431 Sechium edule HOM05D007096 ORTHO05D008288 2.0e-14 82.4 97 53.6
SalBow7G4253 Salvia bowleyana HOM05D007096 ORTHO05D008288 3.5e-14 81.6 94 50.0
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 3.5e-14 81.6 85 50.6
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.7e-13 79.3 91 48.4
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.7e-13 79.3 91 48.4
Migut.D01817 Erythranthe guttata HOM05D007096 ORTHO05D008288 3.8e-13 78.2 97 44.3
Migut.I00178 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.0e-13 77.8 97 45.4
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.1e-12 76.6 90 45.6
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.1e-12 76.6 86 46.5
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 1.9e-12 75.9 90 46.7
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 1.9e-12 75.9 85 49.4
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 3.2e-12 75.1 90 45.6
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 5.5e-12 74.3 86 51.2
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 5.5e-12 74.3 93 47.3
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 7.2e-12 73.9 90 45.6
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-11 72.8 91 45.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 1.6e-11 72.8 90 45.6
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 2.8e-11 72.0 90 46.7
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 2.8e-11 72.0 95 42.1
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 3.6e-11 71.6 84 46.4
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 4.7e-11 71.2 96 43.8
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 6.1e-11 70.9 87 46.0
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 8.0e-11 70.5 90 42.2
Sed0013252 Sechium edule HOM05D007096 ORTHO05D008288 1.8e-10 69.3 96 42.7
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 3.0e-10 68.6 92 44.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 4.0e-10 68.2 90 42.2
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.2e-10 67.8 93 45.2
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 5.2e-10 67.8 93 45.2
CsaV3_1G002320 Cucumis sativus L. HOM05D007096 ORTHO05D008288 6.8e-10 67.4 86 46.5
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.8e-10 67.0 96 44.8
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.2e-09 66.6 86 44.2
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-09 66.6 95 37.9
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 2.0e-09 65.9 91 37.4
MELO3C017172.2 Cucumis melo HOM05D007096 ORTHO05D008288 5.7e-09 64.3 86 45.3
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 5.7e-09 64.3 96 40.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 7.5e-09 63.9 84 42.9
CARHR019480 Cardamine hirsuta HOM05D011140 ORTHO05D013248 4.9e-08 61.2 92 40.2
Thhalv10009347m.g Eutrema salsugineum HOM05D011140 ORTHO05D013248 6.3e-08 60.8 100 38.0
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 8.3e-08 60.5 91 35.2
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 8.3e-08 60.5 90 36.7
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 1.1e-07 60.1 77 44.2
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 1.4e-07 59.7 85 40.0
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 1.8e-07 59.3 85 41.2
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 2.4e-07 58.9 94 42.6
Gohir.A11G031151 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.4e-07 58.9 92 39.1
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 5.4e-07 57.8 85 43.5
Gohir.D11G034500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 5.4e-07 57.8 101 38.6
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 7.0e-07 57.4 107 39.3
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 9.2e-07 57.0 93 35.5
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 1.2e-06 56.6 84 40.5
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-06 56.6 93 35.5
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 5.9e-06 54.3 92 38.0
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 7.8e-06 53.9 95 36.8


User provided reference genes

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