Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 1.9e-240 835.5 429 100.0
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.3e-214 748.8 429 90.0
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.3e-213 743.8 432 89.4
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 2.1e-212 742.3 429 89.7
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 1.5e-205 719.5 432 86.8
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 2.8e-180 635.6 429 79.0
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 9.1e-179 630.6 429 77.6
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 2.5e-168 595.9 462 71.2
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 1.8e-163 579.7 419 74.9
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 7.7e-162 574.3 435 72.2
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 7.2e-160 567.8 429 70.6
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.2e-154 550.4 426 68.1
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 1.0e-153 547.4 407 71.0
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 1.1e-152 543.9 429 68.1
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 4.2e-152 542.0 400 73.0
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 6.1e-151 538.1 434 68.0
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 1.5e-149 533.5 434 67.5
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.5e-149 533.5 439 66.1
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.4e-149 532.3 406 70.4
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 4.4e-149 531.9 404 70.3
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.2e-148 529.6 420 68.6
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 1.8e-147 526.6 413 69.2
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 4.1e-147 525.4 406 70.7
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 5.4e-147 525.0 432 67.1
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.7e-146 522.7 391 69.1
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 4.5e-146 521.9 439 65.6
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 1.7e-145 520.0 430 64.2
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.7e-145 520.0 407 68.8
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 2.3e-145 519.6 433 66.3
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 2.9e-145 519.2 388 70.4
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 5.0e-145 518.5 432 65.7
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 6.6e-145 518.1 404 68.8
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.5e-144 516.9 432 65.5
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 1.0e-142 510.8 382 73.3
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 1.4e-142 510.4 437 65.0
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 1.8e-142 510.0 429 63.2
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 3.4e-141 505.8 398 69.1
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 7.5e-141 504.6 401 68.6
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 9.8e-141 504.2 444 61.5
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.3e-140 503.8 444 61.3
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 1.7e-140 503.4 379 69.4
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 6.3e-140 501.5 421 62.5
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 1.4e-139 500.4 443 63.7
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.8e-139 500.0 427 64.4
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.6e-138 496.9 366 69.7
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.3e-137 493.8 434 62.2
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.7e-137 493.4 443 60.9
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 7.3e-136 488.0 436 61.7
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 1.2e-133 480.7 416 63.0
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 7.5e-133 478.0 416 63.0
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 8.3e-132 474.6 433 61.4
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 9.2e-131 471.1 426 62.4
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 3.5e-130 469.2 425 61.6
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 4.6e-130 468.8 392 64.8
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 6.0e-130 468.4 384 65.9
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 1.7e-129 466.8 428 60.5
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 2.3e-129 466.5 427 61.6
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.3e-129 466.5 377 67.6
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 3.0e-129 466.1 368 68.8
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 6.6e-129 464.9 393 65.6
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 1.5e-128 463.8 427 60.4
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.5e-128 463.8 389 64.8
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.9e-128 463.4 425 61.2
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.5e-128 463.0 399 63.7
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 3.3e-128 462.6 368 67.4
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 3.3e-128 462.6 426 61.0
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 4.3e-128 462.2 346 71.1
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 5.6e-128 461.8 410 62.0
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 9.5e-128 461.1 425 60.2
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 2.1e-127 459.9 426 60.8
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 3.6e-127 459.1 392 64.5
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 4.0e-126 455.7 426 61.0
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 4.0e-126 455.7 426 61.0
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 4.0e-126 455.7 481 57.0
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 6.8e-126 454.9 424 59.7
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 1.5e-125 453.8 424 59.4
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 2.6e-125 453.0 426 59.9
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 2.6e-125 453.0 426 59.9
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.4e-125 452.6 401 62.1
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 5.8e-125 451.8 390 65.1
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.9e-124 449.5 401 63.3
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 8.3e-124 448.0 397 61.7
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 2.4e-123 446.4 430 59.3
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 4.1e-123 445.7 422 60.2
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 9.2e-123 444.5 391 65.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 6.6e-121 438.3 424 59.9
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 8.6e-121 438.0 407 59.2
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 4.3e-120 435.6 406 58.9
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 2.1e-119 433.3 401 58.9
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 3.6e-119 432.6 392 61.2
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 1.4e-118 430.6 430 56.0
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 8.9e-118 427.9 380 63.2
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.5e-117 427.2 346 67.1
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 7.5e-117 424.9 394 59.4
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 1.7e-116 423.7 354 65.8
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 2.1e-114 416.8 422 55.9
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 8.6e-113 411.4 339 66.1
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 4.4e-109 399.1 387 57.1
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.2e-106 391.0 462 50.0
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 1.3e-105 387.5 379 57.5
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 3.0e-105 386.3 418 51.9
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 9.3e-91 338.2 256 71.9
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 7.4e-80 302.0 443 42.7
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 7.4e-80 302.0 443 42.7
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 9.6e-80 301.6 306 55.2
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 6.2e-79 298.9 431 43.2
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.2e-77 294.7 411 44.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 1.8e-73 280.8 404 45.5
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 7.9e-66 255.4 158 82.3
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 2.0e-37 161.0 398 32.7
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 8.5e-36 155.6 127 63.0
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.2e-32 145.2 126 57.1
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 4.9e-31 139.8 345 33.0
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 7.7e-29 132.5 141 49.6
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 4.6e-21 106.7 115 54.8
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 1.4e-17 95.1 160 47.5
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 8.9e-17 92.4 190 36.3
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 5.8e-16 89.7 56 73.2
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 2.9e-15 87.4 141 38.3
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 6.4e-15 86.3 50 80.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.6e-13 81.6 52 76.9
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 4.6e-13 80.1 64 59.4
FAN14G0637 Fragaria x ananassa HOM05D006541 ORTHO05D008471 6.0e-13 79.7 100 55.0
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 3.4e-08 63.9 47 66.0


User provided reference genes

Program Settings