Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0181011 Rosa chinensis HOM05D005938 ORTHO05D007654 2.6e-172 608.6 307 100.0
FAN08G1160 Fragaria x ananassa HOM05D005938 ORTHO05D007654 6.5e-147 524.2 311 85.9
FvH4_5g15170 Fragaria vesca HOM05D005938 ORTHO05D007654 1.9e-146 522.7 308 86.4
FAN18G0122 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.0e-143 512.7 302 86.8
FAN13G2109 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.7e-143 511.1 302 86.8
FAN04G0099 Fragaria x ananassa HOM05D005938 ORTHO05D007654 5.9e-140 501.1 299 86.6
Prupe.5G190900 Prunus persica HOM05D005938 ORTHO05D007654 5.0e-139 498.0 310 81.6
MD06G1191700 Malus domestica HOM05D005938 ORTHO05D007654 2.3e-131 472.6 309 79.0
MD14G1198100 Malus domestica HOM05D005938 ORTHO05D007654 8.6e-131 470.7 309 77.7
QL10p016543 Quercus lobata HOM05D005938 ORTHO05D007654 1.8e-120 436.4 304 71.4
Atru.chr9.2268 Acer truncatum HOM05D005938 ORTHO05D007654 3.1e-120 435.6 305 71.8
CANSAT80G1410 Cannabis sativa HOM05D005938 ORTHO05D007654 8.9e-120 434.1 305 71.5
Sed0010411 Sechium edule HOM05D005938 ORTHO05D007654 1.3e-118 430.3 303 72.9
CsaV3_1G002270 Cucumis sativus L. HOM05D005938 ORTHO05D007654 4.9e-118 428.3 301 72.1
CiPaw.11G042800 Carya illinoinensis HOM05D005938 ORTHO05D007654 3.2e-117 425.6 303 70.3
Lalb_Chr08g0235801 Lupinus albus HOM05D005938 ORTHO05D007654 7.1e-117 424.5 305 69.8
Glyma.06G192800 Glycine max HOM05D005938 ORTHO05D007654 9.2e-117 424.1 310 70.0
MELO3C017167.2 Cucumis melo HOM05D005938 ORTHO05D007654 4.6e-116 421.8 301 71.8
Ca_13688_v3 Cicer arietinum L. HOM05D005938 ORTHO05D007654 3.9e-115 418.7 305 68.9
Gohir.D12G179280 Gossypium hirsutum HOM05D005938 ORTHO05D007654 1.1e-114 417.2 303 69.3
Actinidia34992 Actinidia chinensis HOM05D005938 ORTHO05D007654 9.5e-114 414.1 309 68.0
Lj1g0012745 Lotus japonicus HOM05D005938 ORTHO05D007654 9.5e-114 414.1 305 67.9
Phvul.009G188150 Phaseolus vulgaris HOM05D005938 ORTHO05D007654 1.2e-113 413.7 308 68.5
Gohir.A12G176500 Gossypium hirsutum HOM05D005938 ORTHO05D007654 8.1e-113 411.0 305 67.9
GSVIVG01008024001 Vitis vinifera HOM05D005938 ORTHO05D007654 1.1e-112 410.6 303 69.0
TAR374G0085 Trochodendron aralioides HOM05D005938 ORTHO05D007654 1.2e-111 407.1 300 69.0
CSS0017360 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.5e-111 406.8 303 67.7
CSS0040883 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 1.5e-111 406.8 303 67.7
Ciclev10021191m.g Citrus clementina HOM05D005938 ORTHO05D007654 1.5e-111 406.8 308 68.5
Cfa018959 Carpinus fangiana HOM05D005938 ORTHO05D007654 2.6e-111 406.0 268 75.4
Sc10g0009920 Simmondsia chinensis HOM05D005938 ORTHO05D007654 2.6e-111 406.0 309 67.0
arahy.Tifrunner.gnm1.ann1.KGI6NM Arachis hypogaea HOM05D005938 ORTHO05D007654 1.3e-110 403.7 304 65.8
arahy.Tifrunner.gnm1.ann1.VVHC1U Arachis hypogaea HOM05D005938 ORTHO05D007654 3.7e-110 402.1 303 66.3
Nn3g17204 Nelumbo nucifera HOM05D005938 ORTHO05D007654 8.4e-110 401.0 302 66.2
PGR083G1660 Punica granatum HOM05D005938 ORTHO05D007654 1.1e-109 400.6 306 66.3
Rhsim12G0157100 Rhododendron simsii HOM05D005938 ORTHO05D007654 1.1e-109 400.6 310 65.2
Eucgr.A02632 Eucalyptus grandis HOM05D005938 ORTHO05D007654 4.1e-109 398.7 310 66.1
TAR622G1433 Trochodendron aralioides HOM05D005938 ORTHO05D007654 7.1e-109 397.9 259 76.4
COL.COLO4_24542 Corchorus olitorius HOM05D005938 ORTHO05D007654 1.2e-108 397.1 285 69.8
ClCG06G016260 Citrullus lanatus HOM05D005938 ORTHO05D007654 1.6e-108 396.7 302 69.2
TWI15G1099 Tripterygium wilfordii HOM05D005938 ORTHO05D007654 1.0e-107 394.0 262 74.4
Cc04_g16920 Coffea canephora HOM05D005938 ORTHO05D007654 5.1e-107 391.7 297 66.3
Ah.02g113360 Amaranthus hybridus HOM05D005938 ORTHO05D007654 8.6e-107 391.0 260 74.2
Cpa.g.c30141.1 Carica papaya HOM05D005938 ORTHO05D007654 1.9e-106 389.8 264 72.0
TPR.G11812 Trifolium pratense HOM05D005938 ORTHO05D007654 1.9e-106 389.8 301 65.1
PSO063G3647 Papaver somniferum HOM05D005938 ORTHO05D007654 1.2e-105 387.1 311 65.6
Hund09357 Selenicereus undatus HOM05D005938 ORTHO05D007654 2.8e-105 386.0 304 65.8
vmacro16554 Vaccinium macrocarpon HOM05D005938 ORTHO05D007654 1.1e-104 384.0 338 60.4
Atru.BG.195.p Acer truncatum HOM05D005938 ORTHO05D007654 3.1e-104 382.5 256 75.8
EL10Ac5g10981 Beta vulgaris HOM05D005938 ORTHO05D007654 2.6e-103 379.4 261 72.4
Duzib205G1012 Durio zibethinus HOM05D005938 ORTHO05D007654 2.6e-103 379.4 303 66.3
AL2G34410 Arabidopsis lyrata HOM05D005938 ORTHO05D007654 3.4e-103 379.0 301 60.8
Potri.018G047400 Populus trichocarpa HOM05D005938 ORTHO05D007654 5.8e-103 378.3 272 70.6
Migut.D01830 Erythranthe guttata HOM05D005938 ORTHO05D007654 7.6e-103 377.9 302 63.2
SalBow7G2600 Salvia bowleyana HOM05D005938 ORTHO05D007654 7.6e-103 377.9 310 61.9
Thecc.03G084300 Theobroma cacao HOM05D005938 ORTHO05D007654 9.9e-103 377.5 303 65.0
MSTRG.9633 Avicennia marina HOM05D005938 ORTHO05D007654 2.9e-102 375.9 309 61.5
AUR62008387 Chenopodium quinoa HOM05D005938 ORTHO05D007654 3.8e-102 375.6 261 71.6
PGSC0003DMG400000598 Solanum tuberosum HOM05D005938 ORTHO05D007654 4.9e-102 375.2 302 63.6
Sp5g29710 Schrenkiella parvula HOM05D005938 ORTHO05D007654 6.4e-102 374.8 305 61.0
AUR62021711 Chenopodium quinoa HOM05D005938 ORTHO05D007654 1.1e-101 374.0 261 71.3
A07p40340 Brassica napus HOM05D005938 ORTHO05D007654 1.9e-101 373.2 303 61.1
Thhalv10018904m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 1.9e-101 373.2 300 61.3
Carub.0002s2133 Capsella rubella HOM05D005938 ORTHO05D007654 3.2e-101 372.5 301 59.8
CARHR067810 Cardamine hirsuta HOM05D005938 ORTHO05D007654 7.1e-101 371.3 306 59.8
Sabra18G0045600 Salix brachista HOM05D005938 ORTHO05D007654 1.6e-100 370.2 262 71.0
Lj9A462G75 Lonicera japonica HOM05D005938 ORTHO05D007654 3.5e-100 369.0 285 64.2
Nitab4.5_0004103g0010 Nicotiana tabacum HOM05D005938 ORTHO05D007654 6.0e-100 368.2 302 62.6
BcaC08g46988 Brassica carinata HOM05D005938 ORTHO05D007654 1.0e-99 367.5 298 60.7
Gorai.008G192300 Gossypium raimondii HOM05D005938 ORTHO05D007654 3.0e-99 365.9 294 64.3
Solyc03g116330.3 Solanum lycopersicum HOM05D005938 ORTHO05D007654 8.7e-99 364.4 302 62.3
ECA246G4427 Erigeron canadensis HOM05D005938 ORTHO05D007654 1.1e-98 364.0 305 59.7
HanXRQChr05g0158101 Helianthus annuus HOM05D005938 ORTHO05D007654 2.5e-98 362.8 304 60.2
THA.LOC104812546 Tarenaya hassleriana HOM05D005938 ORTHO05D007654 7.3e-98 361.3 299 60.2
BraA07t31575Z Brassica rapa HOM05D005938 ORTHO05D007654 1.6e-97 360.1 326 56.7
CAN.G407.117 Capsicum annuum HOM05D005938 ORTHO05D007654 1.4e-96 357.1 299 62.2
DCAR_021525 Daucus carota HOM05D005938 ORTHO05D007654 3.1e-96 355.9 301 62.8
BcaC08g46886 Brassica carinata HOM05D005938 ORTHO05D007654 4.0e-96 355.5 303 59.1
Psat5g187160 Pisum sativum HOM05D005938 ORTHO05D007654 1.5e-95 353.6 272 65.8
Peaxi162Scf00274g00846 Petunia axillaris HOM05D005938 ORTHO05D007654 9.9e-95 350.9 308 59.4
Nitab4.5_0002257g0140 Nicotiana tabacum HOM05D005938 ORTHO05D007654 1.3e-94 350.5 330 57.6
Oeu016169.1 Olea europaea HOM05D005938 ORTHO05D007654 4.9e-94 348.6 264 66.3
unitig_744.g24387 Utricularia gibba HOM05D005938 ORTHO05D007654 4.9e-94 348.6 303 59.4
Manes.06G094000 Manihot esculenta HOM05D005938 ORTHO05D007654 3.2e-93 345.9 305 61.6
ATR0564G381 Amborella trichopoda HOM05D005938 ORTHO05D007654 9.3e-93 344.4 260 66.9
CDE02G0021 Ceratophyllum demersum HOM05D005938 ORTHO05D007654 9.3e-93 344.4 280 61.4
Lsat_1_v5_gn_5_19401 Lactuca sativa HOM05D005938 ORTHO05D007654 1.3e-91 340.5 302 58.3
Aa31LG7G3570 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.3e-91 339.7 301 57.1
Dinv38693 Davidia involucrata HOM05D005938 ORTHO05D007654 1.1e-90 337.4 247 69.6
Sopen03g035260 Solanum pennellii HOM05D005938 ORTHO05D007654 1.1e-90 337.4 253 65.6
Os08g0171000 Oryza sativa ssp. japonica HOM05D005938 ORTHO05D007654 3.6e-89 332.4 262 59.9
SGA_v2.0_scaffold114G31898 Striga asiatica HOM05D005938 ORTHO05D007654 3.1e-88 329.3 304 56.6
SEGI_36934 Sequoiadendron giganteum HOM05D005938 ORTHO05D007654 5.5e-85 318.5 300 53.7
Aqoxy3G03351 Aquilegia oxysepala HOM05D005938 ORTHO05D007654 9.3e-85 317.8 267 62.9
BcaC08g46884 Brassica carinata HOM05D005938 ORTHO05D007654 5.1e-83 312.0 324 53.1
Haze_07341 Corylus avellana HOM05D005938 ORTHO05D007654 9.6e-82 307.8 372 51.1
SHI04241 Sapria himalayana HOM05D005938 ORTHO05D007654 2.6e-79 299.7 316 52.5
C06p48680 Brassica napus HOM05D005938 ORTHO05D007654 7.6e-79 298.1 243 60.9
Aa31LG4G4790 Aethionema arabicum HOM05D005938 ORTHO05D007654 2.9e-78 296.2 238 62.6
Mapoly0002s0073 Marchantia polymorpha HOM05D005938 ORTHO05D007654 4.9e-78 295.4 261 57.9
BolC6t39901H Brassica oleracea HOM05D005938 ORTHO05D007654 7.1e-77 291.6 250 60.4
Medtr0036s0320 Medicago truncatula HOM05D005938 ORTHO05D007654 1.0e-75 287.7 190 72.1
AT1G74530 Arabidopsis thaliana HOM05D005938 ORTHO05D007654 2.5e-74 283.1 240 60.8
CSS0050188 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 4.6e-68 262.3 210 65.7
VMungo1309G2195 Vigna mungo HOM05D005938 ORTHO05D007654 1.0e-67 261.2 174 73.6
Pp3c17_15280 Physcomitrium patens HOM05D005938 ORTHO05D007654 4.3e-66 255.8 259 53.3
FAN10G3346 Fragaria x ananassa HOM05D005938 ORTHO05D007654 7.4e-66 255.0 147 87.1
AagrBONN_evm.TU.Sc2ySwM_117.1670 Anthoceros agrestis HOM05D005938 ORTHO05D007654 5.9e-63 245.4 261 49.8
MBI02_g23681_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 2.2e-62 243.4 164 73.8
SMO270G0117 Selaginella moellendorffii HOM05D005938 ORTHO05D007654 3.8e-62 242.7 260 48.5
Hma1.2p1_0735F.1_g210490 Hydrangea macrophylla HOM05D005938 ORTHO05D007654 6.5e-62 241.9 164 70.7
CBR_g66809 Chara braunii HOM05D005938 ORTHO05D007654 6.3e-57 225.3 265 42.3
Glyma.04G170700 Glycine max HOM05D005938 ORTHO05D007654 2.3e-51 206.8 160 65.6
Zm00001eb415000 Zea mays HOM05D005938 ORTHO05D007654 1.8e-48 197.2 213 51.2
FAN18G0131 Fragaria x ananassa HOM05D005938 ORTHO05D007654 4.1e-40 169.5 156 63.5
FAN01G1759 Fragaria x ananassa HOM05D005938 ORTHO05D007654 2.2e-38 163.7 109 78.0
arahy.Tifrunner.gnm1.ann1.518D86 Arachis hypogaea HOM05D005938 ORTHO05D007654 5.7e-34 149.1 145 55.2
Prupe.5G190800 Prunus persica HOM05D005938 ORTHO05D007654 1.3e-33 147.9 97 75.3
MBI15_g27838_MAGBIO Magnolia biondii HOM05D005938 ORTHO05D007654 2.8e-33 146.7 163 52.1
MCO16G029 Micromonas commoda HOM05D005938 ORTHO05D007654 1.4e-32 144.4 296 32.8
QL07p001114 Quercus lobata HOM05D005938 ORTHO05D007654 9.1e-32 141.7 169 48.5
Medtr3g040450 Medicago truncatula HOM05D005938 ORTHO05D007654 1.1e-29 134.8 118 61.9
MD17G1094500 Malus domestica HOM05D005938 ORTHO05D007654 1.9e-29 134.0 79 83.5
Cre12.g513300 Chlamydomonas reinhardtii HOM05D005938 ORTHO05D007654 2.6e-26 123.6 247 34.4
VMungo0019G0001 Vigna mungo HOM05D005938 ORTHO05D007654 7.5e-26 122.1 190 44.7
CSS0038577 Camellia sinensis var. sinensis HOM05D005938 ORTHO05D007654 9.8e-26 121.7 83 69.9
QL02p071402 Quercus lobata HOM05D005938 ORTHO05D028155 1.6e-23 114.4 69 75.4
QL12p034017 Quercus lobata HOM05D000176 ORTHO05D000106 7.8e-23 112.1 126 50.8
PRCOL_00003564 Prasinoderma coloniale HOM05D005938 ORTHO05D007654 3.8e-22 109.8 246 32.5
Thhalv10000377m.g Eutrema salsugineum HOM05D005938 ORTHO05D007654 3.5e-07 60.1 94 40.4
MCO06G261 Micromonas commoda HOM05D005938 ORTHO05D044307 6.0e-07 59.3 149 28.2


User provided reference genes

Program Settings