Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 1.6e-181 639.4 354 100.0
FvH4_5g15300 Fragaria vesca HOM05D005535 ORTHO05D006753 1.2e-155 553.5 356 88.5
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 7.0e-153 544.3 358 88.0
FAN18G1286 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.1e-150 537.0 358 86.9
FAN08G2745 Fragaria x ananassa HOM05D005535 ORTHO05D006753 1.2e-144 516.9 358 86.3
FAN04G1197 Fragaria x ananassa HOM05D005535 ORTHO05D006753 2.7e-144 515.8 359 85.2
Prupe.5G188200 Prunus persica HOM05D005535 ORTHO05D006753 3.1e-116 422.5 349 73.4
MD14G1196400 Malus domestica HOM05D005535 ORTHO05D006753 3.1e-100 369.4 357 66.9
MD06G1189400 Malus domestica HOM05D005535 ORTHO05D006753 4.1e-100 369.0 326 69.9
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 4.1e-92 342.4 356 61.5
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 1.1e-89 334.3 368 60.9
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.1e-89 334.3 349 62.2
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 1.4e-89 334.0 368 60.6
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.2e-88 330.9 363 59.5
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.6e-88 329.3 356 59.8
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.0e-87 326.2 357 59.9
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 3.0e-87 326.2 349 59.6
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 2.2e-85 320.1 358 58.9
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 6.3e-85 318.5 352 58.0
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.1e-84 317.8 340 59.7
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 2.6e-83 313.2 331 60.7
GSVIVG01008044001 Vitis vinifera HOM05D005535 ORTHO05D006753 2.6e-83 313.2 360 59.2
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 4.5e-83 312.4 358 58.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 3.8e-82 309.3 365 56.4
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 2.5e-81 306.6 352 56.8
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 5.5e-81 305.4 351 57.8
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 9.4e-81 304.7 358 57.3
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 2.7e-80 303.1 356 57.6
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 6.1e-80 302.0 384 53.9
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.0e-79 299.7 355 57.7
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 3.9e-79 299.3 343 56.3
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 5.7e-78 295.4 361 54.6
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 9.7e-78 294.7 350 56.3
PGR083G2381 Punica granatum HOM05D005535 ORTHO05D006753 9.7e-78 294.7 359 55.7
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.4e-76 290.8 344 55.8
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 1.6e-75 287.3 345 53.0
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.6e-75 286.6 358 53.9
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.0e-74 284.6 370 52.4
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 1.3e-74 284.3 325 57.2
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 2.5e-73 280.0 363 53.7
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 1.6e-72 277.3 373 52.8
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.6e-72 277.3 287 60.3
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 2.1e-72 276.9 367 51.8
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 3.6e-72 276.2 360 53.6
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 1.4e-71 274.2 374 52.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.3e-71 273.5 372 52.4
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 2.6e-70 270.0 361 51.8
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 5.7e-70 268.9 345 54.2
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.3e-69 267.7 354 52.5
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 1.3e-69 267.7 365 52.6
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 2.2e-69 266.9 355 52.7
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 8.2e-69 265.0 345 52.8
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 1.6e-67 260.8 361 52.4
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 2.7e-67 260.0 351 52.7
Cc04_g15390 Coffea canephora HOM05D005535 ORTHO05D006753 2.2e-66 256.9 362 50.6
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 8.5e-66 255.0 361 50.4
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 8.5e-66 255.0 330 52.4
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.1e-65 254.6 366 52.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.1e-65 254.6 363 50.4
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.1e-65 254.6 355 49.9
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.5e-65 254.2 355 49.6
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.9e-65 253.8 347 52.7
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 1.9e-65 253.8 343 50.4
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 2.5e-65 253.4 386 50.0
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.5e-65 253.4 362 50.0
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 3.2e-65 253.1 373 49.3
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 2.1e-64 250.4 349 48.7
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 3.6e-64 249.6 345 50.7
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 8.0e-64 248.4 351 51.3
HanXRQChr09g0271071 Helianthus annuus HOM05D005535 ORTHO05D006753 8.0e-64 248.4 351 49.3
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 1.8e-63 247.3 354 47.7
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 4.0e-63 246.1 334 52.1
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 4.0e-63 246.1 303 53.5
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 6.8e-63 245.4 352 50.0
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 4.4e-62 242.7 258 58.9
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.4e-62 242.7 378 50.5
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 5.7e-62 242.3 370 49.7
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 5.7e-62 242.3 368 50.0
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 5.7e-62 242.3 356 49.4
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.3e-61 241.1 363 48.8
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.2e-61 240.4 358 48.6
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 1.1e-60 238.0 397 48.4
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.8e-60 237.3 356 48.6
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 4.1e-60 236.1 332 50.0
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 4.1e-60 236.1 349 47.0
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 9.1e-60 235.0 369 48.8
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 1.2e-59 234.6 324 49.4
ECA232G4425 Erigeron canadensis HOM05D005535 ORTHO05D006753 2.0e-59 233.8 363 48.5
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 3.5e-59 233.0 354 48.3
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 3.8e-58 229.6 352 50.3
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 3.8e-58 229.6 360 49.4
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 8.6e-58 228.4 349 45.0
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 1.1e-57 228.0 363 46.6
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 1.5e-57 227.6 358 49.4
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 3.3e-57 226.5 364 48.4
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 7.2e-57 225.3 356 47.8
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 2.1e-56 223.8 365 47.4
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.8e-56 223.4 387 46.0
Sed0000211 Sechium edule HOM05D005535 ORTHO05D006753 8.0e-56 221.9 367 48.5
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 2.3e-55 220.3 364 47.0
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 5.2e-55 219.2 392 45.7
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 5.7e-54 215.7 367 47.4
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 6.3e-53 212.2 343 46.9
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 5.4e-52 209.1 357 45.1
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 5.4e-52 209.1 320 50.3
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 5.4e-52 209.1 381 45.9
HanXRQChr05g0158021 Helianthus annuus HOM05D005535 ORTHO05D006753 2.7e-51 206.8 360 45.3
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 2.7e-51 206.8 359 45.1
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.5e-49 201.1 325 45.2
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 2.6e-46 190.3 275 47.3
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.8e-46 189.1 381 41.5
Lsat_1_v5_gn_5_19040 Lactuca sativa HOM05D005535 ORTHO05D006753 8.3e-45 185.3 339 43.4
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 1.4e-44 184.5 355 42.0
THA.LOC104821430 Tarenaya hassleriana HOM05D005535 ORTHO05D006753 2.0e-43 180.6 329 44.4
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 6.0e-43 179.1 344 42.7
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 5.6e-41 172.6 345 39.7
Zm00001eb277070 Zea mays HOM05D005535 ORTHO05D006753 1.2e-40 171.4 351 40.2
Zm00001eb386190 Zea mays HOM05D005535 ORTHO05D006753 1.2e-40 171.4 343 39.1
Os06g0589500 Oryza sativa ssp. japonica HOM05D005535 ORTHO05D006753 4.7e-40 169.5 348 39.9
Sp2g25720 Schrenkiella parvula HOM05D005535 ORTHO05D006753 1.8e-39 167.5 341 40.8
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 3.4e-38 163.3 324 40.4
BraA06t25881Z Brassica rapa HOM05D005535 ORTHO05D006753 3.4e-38 163.3 366 38.0
BcaB02g09657 Brassica carinata HOM05D005535 ORTHO05D006753 1.7e-37 161.0 366 37.7
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 1.7e-37 161.0 355 38.3
BcaC01g02485 Brassica carinata HOM05D005535 ORTHO05D006753 6.4e-37 159.1 362 37.6
C03p64280 Brassica napus HOM05D005535 ORTHO05D006753 6.4e-37 159.1 362 37.6
BolC3t18683H Brassica oleracea HOM05D005535 ORTHO05D006753 6.4e-37 159.1 362 37.6
AT5G62550 Arabidopsis thaliana HOM05D005535 ORTHO05D006753 4.1e-36 156.4 248 45.6
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 3.0e-34 150.2 358 37.7
Carub.0008s2322 Capsella rubella HOM05D005535 ORTHO05D006753 1.6e-32 144.4 352 38.4
Aa31LG11G1090 Aethionema arabicum HOM05D005535 ORTHO05D006753 3.6e-32 143.3 363 36.4
TWI34G0031 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 1.7e-26 124.4 180 48.9
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 3.2e-20 103.6 453 30.5
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 1.3e-10 71.6 235 31.9
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 8.7e-10 68.9 190 31.1
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 1.9e-09 67.8 125 40.0
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 2.5e-09 67.4 115 38.3
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 4.3e-09 66.6 84 46.4
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 5.6e-09 66.2 189 32.3
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 7.3e-09 65.9 159 34.0
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 1.3e-08 65.1 193 32.1
MD01G1041800 Malus domestica HOM05D005535 ORTHO05D006753 1.6e-08 64.7 51 70.6
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 2.1e-08 64.3 203 31.5
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 2.1e-08 64.3 160 35.0
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 2.8e-08 63.9 220 30.5
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 3.6e-08 63.5 115 40.0
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 4.8e-08 63.2 109 40.4
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 8.1e-08 62.4 61 50.8
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.1e-07 62.0 135 36.3
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.4e-07 61.6 163 34.4
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 1.4e-07 61.6 192 32.8
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.8e-07 61.2 170 31.2
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 1.8e-07 61.2 200 31.0
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 2.4e-07 60.8 159 30.8
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 3.1e-07 60.5 181 30.9
TAR375G0593 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.1e-07 60.5 67 53.7
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 5.3e-07 59.7 166 29.5
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 6.9e-07 59.3 180 32.2
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 6.9e-07 59.3 181 32.6
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 9.0e-07 58.9 193 30.1
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.2e-06 58.5 218 28.4
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 1.2e-06 58.5 176 29.0
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 1.2e-06 58.5 176 27.3
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 2.0e-06 57.8 183 30.1
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 2.0e-06 57.8 166 33.1
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 2.0e-06 57.8 135 34.8
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.6e-06 57.4 172 30.2
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 4.5e-06 56.6 171 31.6
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 4.5e-06 56.6 87 43.7
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 4.5e-06 56.6 117 37.6
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 5.8e-06 56.2 180 28.9
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 7.6e-06 55.8 186 29.0


User provided reference genes

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