Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0180591 Rosa chinensis HOM05D006349 ORTHO05D008205 5.3e-89 331.3 201 100.0
FAN13G0390 Fragaria x ananassa HOM05D006349 ORTHO05D008205 6.3e-82 307.8 202 94.6
FvH4_5g15500 Fragaria vesca HOM05D006349 ORTHO05D008205 9.1e-81 303.9 203 94.1
FAN18G4547 Fragaria x ananassa HOM05D006349 ORTHO05D008205 2.6e-80 302.4 203 93.6
FAN04G0897 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.4e-76 290.0 203 91.6
FAN08G2244 Fragaria x ananassa HOM05D006349 ORTHO05D008205 1.5e-62 243.4 202 79.7
MD06G1188100 Malus domestica HOM05D006349 ORTHO05D008205 8.9e-60 234.2 207 74.9
arahy.Tifrunner.gnm1.ann1.GD5F3R Arachis hypogaea HOM05D006349 ORTHO05D008205 3.6e-53 212.2 196 71.4
CANSAT80G2583 Cannabis sativa HOM05D006349 ORTHO05D008205 6.1e-53 211.5 202 70.8
MD14G1194200 Malus domestica HOM05D006349 ORTHO05D008205 1.0e-52 210.7 207 70.5
arahy.Tifrunner.gnm1.ann1.FR12T1 Arachis hypogaea HOM05D006349 ORTHO05D008205 1.5e-51 206.8 197 71.1
QL10p015567 Quercus lobata HOM05D006349 ORTHO05D008205 7.5e-51 204.5 200 68.5
HanXRQChr09g0271121 Helianthus annuus HOM05D006349 ORTHO05D008205 2.9e-50 202.6 177 75.7
Atru.chr9.2318 Acer truncatum HOM05D006349 ORTHO05D008205 4.9e-50 201.8 187 73.8
Cfa018991 Carpinus fangiana HOM05D006349 ORTHO05D008205 1.9e-49 199.9 201 67.2
Psat7g112120 Pisum sativum HOM05D006349 ORTHO05D008205 1.9e-49 199.9 185 71.9
Gohir.D13G009000 Gossypium hirsutum HOM05D006349 ORTHO05D008205 2.4e-49 199.5 196 71.4
Gorai.013G009800 Gossypium raimondii HOM05D006349 ORTHO05D008205 2.4e-49 199.5 196 71.4
Gohir.A13G008300 Gossypium hirsutum HOM05D006349 ORTHO05D008205 3.2e-49 199.1 196 71.4
Potri.012G070600 Populus trichocarpa HOM05D006349 ORTHO05D008205 4.1e-49 198.7 181 72.4
Prupe.5G186300 Prunus persica HOM05D006349 ORTHO05D008205 4.1e-49 198.7 208 67.8
Hma1.2p1_0104F.1_g050210 Hydrangea macrophylla HOM05D006349 ORTHO05D008205 5.4e-49 198.4 175 74.3
Glyma.04G174400 Glycine max HOM05D006349 ORTHO05D008205 7.0e-49 198.0 178 73.0
Lj1g0000266 Lotus japonicus HOM05D006349 ORTHO05D008205 1.6e-48 196.8 202 68.3
Phvul.009G190100 Phaseolus vulgaris HOM05D006349 ORTHO05D008205 2.0e-48 196.4 196 68.9
PGR083G1017 Punica granatum HOM05D006349 ORTHO05D008205 3.5e-48 195.7 165 77.6
Eucgr.B00425 Eucalyptus grandis HOM05D006349 ORTHO05D008205 7.8e-48 194.5 201 68.2
Glyma.06G190300 Glycine max HOM05D006349 ORTHO05D008205 1.0e-47 194.1 174 71.8
ClCG01G014390 Citrullus lanatus HOM05D006349 ORTHO05D008205 1.3e-47 193.7 204 66.2
CiPaw.11G038000 Carya illinoinensis HOM05D006349 ORTHO05D008205 3.0e-47 192.6 201 66.7
Cpa.g.sc17.203 Carica papaya HOM05D006349 ORTHO05D008205 5.0e-47 191.8 205 66.3
Nitab4.5_0000785g0220 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.1e-46 190.7 193 68.4
TPR.G11993 Trifolium pratense HOM05D006349 ORTHO05D008205 1.1e-46 190.7 158 77.8
ECA232G0565 Erigeron canadensis HOM05D006349 ORTHO05D008205 1.9e-46 189.9 204 65.7
Nitab4.5_0004605g0070 Nicotiana tabacum HOM05D006349 ORTHO05D008205 1.9e-46 189.9 175 72.6
Ca_25734_v3 Cicer arietinum L. HOM05D006349 ORTHO05D008205 2.5e-46 189.5 184 69.6
Potri.015G065100 Populus trichocarpa HOM05D006349 ORTHO05D008205 2.5e-46 189.5 185 69.2
A07p40410 Brassica napus HOM05D006349 ORTHO05D008205 3.3e-46 189.1 194 67.5
Aqoxy3G03265 Aquilegia oxysepala HOM05D006349 ORTHO05D008205 4.3e-46 188.7 201 66.7
BolC6t39912H Brassica oleracea HOM05D006349 ORTHO05D008205 4.3e-46 188.7 196 66.3
Duzib068G1139 Durio zibethinus HOM05D006349 ORTHO05D008205 5.6e-46 188.3 203 67.0
Solyc03g113240.3 Solanum lycopersicum HOM05D006349 ORTHO05D008205 5.6e-46 188.3 182 70.3
Sopen03g032300 Solanum pennellii HOM05D006349 ORTHO05D008205 5.6e-46 188.3 182 70.3
CAN.G999.48 Capsicum annuum HOM05D006349 ORTHO05D008205 7.3e-46 188.0 177 72.3
CsaV3_1G007920 Cucumis sativus L. HOM05D006349 ORTHO05D008205 1.2e-45 187.2 207 65.2
Migut.D01854 Erythranthe guttata HOM05D006349 ORTHO05D008205 1.2e-45 187.2 156 75.6
Sp5g29850 Schrenkiella parvula HOM05D006349 ORTHO05D008205 1.2e-45 187.2 173 72.8
Peaxi162Scf00009g00321 Petunia axillaris HOM05D006349 ORTHO05D008205 1.6e-45 186.8 154 79.2
Sabra15G0090500 Salix brachista HOM05D006349 ORTHO05D008205 1.6e-45 186.8 181 69.1
Ciclev10022359m.g Citrus clementina HOM05D006349 ORTHO05D008205 2.1e-45 186.4 181 70.7
BcaC08g46899 Brassica carinata HOM05D006349 ORTHO05D008205 2.8e-45 186.0 194 66.5
C06p48760 Brassica napus HOM05D006349 ORTHO05D008205 2.8e-45 186.0 194 66.5
BraA07t31583Z Brassica rapa HOM05D006349 ORTHO05D008205 2.8e-45 186.0 196 65.8
PGSC0003DMG400025345 Solanum tuberosum HOM05D006349 ORTHO05D008205 2.8e-45 186.0 182 69.2
AUR62021741 Chenopodium quinoa HOM05D006349 ORTHO05D008205 3.6e-45 185.7 166 74.1
DCAR_015995 Daucus carota HOM05D006349 ORTHO05D008205 3.6e-45 185.7 186 68.3
Lalb_Chr08g0235931 Lupinus albus HOM05D006349 ORTHO05D008205 3.6e-45 185.7 158 75.9
BcaC03g15525 Brassica carinata HOM05D006349 ORTHO05D008205 4.7e-45 185.3 173 71.1
C02p32090 Brassica napus HOM05D006349 ORTHO05D008205 4.7e-45 185.3 173 71.1
BolC2t09244H Brassica oleracea HOM05D006349 ORTHO05D008205 1.1e-44 184.1 173 70.5
vmacro19434 Vaccinium macrocarpon HOM05D006349 ORTHO05D008205 1.1e-44 184.1 154 77.3
AL2G34620 Arabidopsis lyrata HOM05D006349 ORTHO05D008205 1.8e-44 183.3 173 71.7
CARHR068050 Cardamine hirsuta HOM05D006349 ORTHO05D008205 1.8e-44 183.3 158 74.7
MELO3C002208.2 Cucumis melo HOM05D006349 ORTHO05D008205 1.8e-44 183.3 204 64.7
Manes.06G096400 Manihot esculenta HOM05D006349 ORTHO05D008205 2.3e-44 183.0 201 65.2
MBI19_g30284_MAGBIO Magnolia biondii HOM05D006349 ORTHO05D008205 3.1e-44 182.6 162 73.5
Sc12g0006210 Simmondsia chinensis HOM05D006349 ORTHO05D008205 3.1e-44 182.6 181 69.1
AT1G74730 Arabidopsis thaliana HOM05D006349 ORTHO05D008205 4.0e-44 182.2 173 72.3
Lsat_1_v5_gn_4_107320 Lactuca sativa HOM05D006349 ORTHO05D008205 4.0e-44 182.2 198 66.2
Medtr4g089080 Medicago truncatula HOM05D006349 ORTHO05D008205 5.2e-44 181.8 180 67.8
Nn4g23038 Nelumbo nucifera HOM05D006349 ORTHO05D008205 5.2e-44 181.8 167 73.1
BraA02t06992Z Brassica rapa HOM05D006349 ORTHO05D008205 6.8e-44 181.4 196 64.8
Carub.0002s2152 Capsella rubella HOM05D006349 ORTHO05D008205 6.8e-44 181.4 173 71.1
Actinidia37657 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.2e-43 180.6 157 75.2
Dinv38665 Davidia involucrata HOM05D006349 ORTHO05D008205 1.5e-43 180.3 147 79.6
CDE07G1088 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 2.0e-43 179.9 161 71.4
COL.COLO4_05705 Corchorus olitorius HOM05D006349 ORTHO05D008205 2.0e-43 179.9 199 65.3
Lj9P459T48 Lonicera japonica HOM05D006349 ORTHO05D008205 2.0e-43 179.9 149 77.9
EL10Ac5g10944 Beta vulgaris HOM05D006349 ORTHO05D008205 2.6e-43 179.5 168 72.0
SGA_v2.0_scaffold7G04081 Striga asiatica HOM05D006349 ORTHO05D008205 4.4e-43 178.7 173 69.4
GSVIVG01008063001 Vitis vinifera HOM05D006349 ORTHO05D008205 4.4e-43 178.7 201 64.7
CSS0001294 Camellia sinensis var. sinensis HOM05D006349 ORTHO05D008205 9.8e-43 177.6 149 77.2
PSO781G0309 Papaver somniferum HOM05D006349 ORTHO05D008205 9.8e-43 177.6 199 63.8
AUR62008355 Chenopodium quinoa HOM05D006349 ORTHO05D008205 1.7e-42 176.8 150 77.3
Oeu006473.1 Olea europaea HOM05D006349 ORTHO05D008205 1.7e-42 176.8 154 74.0
Hund02668 Selenicereus undatus HOM05D006349 ORTHO05D008205 2.9e-42 176.0 196 61.7
TWI81G0140 Tripterygium wilfordii HOM05D006349 ORTHO05D008205 3.7e-42 175.6 200 64.0
Zm00001eb160550 Zea mays HOM05D006349 ORTHO05D008205 6.4e-42 174.9 161 71.4
BcaB05g24870 Brassica carinata HOM05D003553 ORTHO05D005072 1.4e-41 173.7 173 67.1
Sed0016194 Sechium edule HOM05D006349 ORTHO05D008205 2.4e-41 172.9 175 68.6
CDE04G3639 Ceratophyllum demersum HOM05D006349 ORTHO05D008205 3.2e-41 172.6 161 70.2
Ah.02g113210 Amaranthus hybridus HOM05D006349 ORTHO05D008205 5.4e-41 171.8 148 77.0
ATR1120G128 Amborella trichopoda HOM05D006349 ORTHO05D008205 1.6e-40 170.2 167 66.5
Thecc.03G079100 Theobroma cacao HOM05D006349 ORTHO05D008205 1.6e-40 170.2 198 63.6
HPP92_022919 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.7e-40 169.5 175 64.0
HPP92_022931 Vanilla planifolia HOM05D006349 ORTHO05D008205 2.7e-40 169.5 175 64.0
Thhalv10019168m.g Eutrema salsugineum HOM05D006349 ORTHO05D008205 4.6e-40 168.7 171 69.0
Cc04_g15550 Coffea canephora HOM05D006349 ORTHO05D008205 5.1e-39 165.2 202 59.9
SalBow7G1566 Salvia bowleyana HOM05D006349 ORTHO05D008205 8.6e-39 164.5 156 69.2
Haze_07380 Corylus avellana HOM05D006349 ORTHO05D008205 1.5e-38 163.7 201 60.2
Os01g0585300 Oryza sativa ssp. japonica HOM05D006349 ORTHO05D008205 5.6e-38 161.8 161 68.9
Aa31LG4G4960 Aethionema arabicum HOM05D006349 ORTHO05D008205 2.1e-37 159.8 185 60.0
TAR622G0703 Trochodendron aralioides HOM05D006349 ORTHO05D008205 8.9e-36 154.5 179 62.6
PSO541G4605 Papaver somniferum HOM05D006349 ORTHO05D008205 1.5e-35 153.7 195 60.5
BcaC08g46920 Brassica carinata HOM05D006349 ORTHO05D008205 2.6e-35 152.9 146 74.0
MSTRG.4410 Avicennia marina HOM05D006349 ORTHO05D008205 4.4e-35 152.1 154 69.5
unitig_46.g18468 Utricularia gibba HOM05D006349 ORTHO05D008205 4.9e-34 148.7 175 58.9
Pp3c20_23180 Physcomitrium patens HOM05D006349 ORTHO05D008205 6.8e-28 128.3 151 60.9
SEGI_24937 Sequoiadendron giganteum HOM05D006349 ORTHO05D008205 5.4e-25 118.6 157 56.7
Mapoly0105s0011 Marchantia polymorpha HOM05D006349 ORTHO05D008205 2.7e-24 116.3 163 57.7
Actinidia04919 Actinidia chinensis HOM05D006349 ORTHO05D008205 1.0e-23 114.4 112 58.0
SMO340G0151 Selaginella moellendorffii HOM05D006349 ORTHO05D008205 5.6e-22 108.6 150 56.7
SGA_v2.0_scaffold294G47475 Striga asiatica HOM05D006349 ORTHO05D008205 8.1e-21 104.8 122 55.7
AagrBONN_evm.TU.Sc2ySwM_362.857 Anthoceros agrestis HOM05D006349 ORTHO05D008205 3.1e-20 102.8 163 53.4
CARHR103880 Cardamine hirsuta HOM05D006349 ORTHO05D008205 5.8e-19 98.6 140 57.9
Pp3c25_12400 Physcomitrium patens HOM05D006349 ORTHO05D008205 8.4e-18 94.7 117 59.8
CBR_g48703 Chara braunii HOM05D006349 ORTHO05D008205 1.1e-17 94.4 167 49.1
A02p19550 Brassica napus HOM05D006349 ORTHO05D008205 4.2e-17 92.4 70 62.9
BcaC03g15526 Brassica carinata HOM05D006349 ORTHO05D008205 1.2e-16 90.9 110 57.3
Nn8g40820 Nelumbo nucifera HOM05D006349 ORTHO05D008205 1.9e-09 67.0 111 49.5
Pp3c24_420 Physcomitrium patens HOM05D006349 ORTHO05D008205 1.3e-07 60.8 151 44.4


User provided reference genes

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