Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0180111 Rosa chinensis HOM05D005231 ORTHO05D006387 0.0e+00 2206.8 1170 100.0
FAN08G2159 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2127.4 1170 96.2
FAN18G1846 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2123.2 1170 95.8
FvH4_5g15940 Fragaria vesca HOM05D005231 ORTHO05D006387 0.0e+00 2121.7 1170 95.6
FAN04G1242 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 2118.6 1170 95.8
MD06G1184100 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 2087.4 1171 93.3
Prupe.5G183000 Prunus persica HOM05D005231 ORTHO05D006387 0.0e+00 2086.2 1172 93.3
Haze_14831 Corylus avellana HOM05D005231 ORTHO05D006387 0.0e+00 2028.4 1165 90.2
Cfa007256 Carpinus fangiana HOM05D005231 ORTHO05D006387 0.0e+00 2027.3 1164 90.0
CANSAT64G0673 Cannabis sativa HOM05D005231 ORTHO05D006387 0.0e+00 2026.9 1172 90.4
CiPaw.03G052100 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 2021.5 1167 89.8
Dinv25680 Davidia involucrata HOM05D005231 ORTHO05D006387 0.0e+00 2000.3 1171 89.2
Thecc.04G029800 Theobroma cacao HOM05D005231 ORTHO05D006387 0.0e+00 1993.8 1170 87.9
ClCG05G007180 Citrullus lanatus HOM05D005231 ORTHO05D006387 0.0e+00 1992.2 1170 88.0
Eucgr.I01665 Eucalyptus grandis HOM05D005231 ORTHO05D006387 0.0e+00 1992.2 1174 88.9
QL02p072461 Quercus lobata HOM05D005231 ORTHO05D006387 0.0e+00 1992.2 1170 88.0
Atru.chr6.2511 Acer truncatum HOM05D005231 ORTHO05D006387 0.0e+00 1991.9 1170 87.9
CiPaw.04G034400 Carya illinoinensis HOM05D005231 ORTHO05D006387 0.0e+00 1991.5 1166 89.2
Hma1.2p1_0571F.1_g180760 Hydrangea macrophylla HOM05D005231 ORTHO05D006387 0.0e+00 1990.7 1172 87.9
Ca_26723_v3 Cicer arietinum L. HOM05D005231 ORTHO05D006387 0.0e+00 1988.8 1172 85.8
FAN13G1708 Fragaria x ananassa HOM05D005231 ORTHO05D006387 0.0e+00 1987.6 1193 90.4
TPR.G38280 Trifolium pratense HOM05D005231 ORTHO05D006387 0.0e+00 1984.9 1173 86.1
Cc07_g00560 Coffea canephora HOM05D005231 ORTHO05D006387 0.0e+00 1981.1 1171 87.2
Lj7A607T31 Lonicera japonica HOM05D005231 ORTHO05D006387 0.0e+00 1980.3 1172 87.3
Duzib264G1000 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1977.6 1170 87.8
Glyma.19G086600 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1977.6 1174 86.8
Lalb_Chr14g0363091 Lupinus albus HOM05D005231 ORTHO05D006387 0.0e+00 1977.6 1172 86.9
TAR371G0773 Trochodendron aralioides HOM05D005231 ORTHO05D006387 0.0e+00 1976.8 1175 87.9
Actinidia30894 Actinidia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1974.1 1171 87.7
Sed0020589 Sechium edule HOM05D005231 ORTHO05D006387 0.0e+00 1974.1 1170 88.1
Ciclev10014086m.g Citrus clementina HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1170 87.4
Psat3g170000 Pisum sativum HOM05D005231 ORTHO05D006387 0.0e+00 1973.4 1172 86.3
COL.COLO4_08767 Corchorus olitorius HOM05D005231 ORTHO05D006387 0.0e+00 1969.9 1170 86.7
Duzib147G1087 Durio zibethinus HOM05D005231 ORTHO05D006387 0.0e+00 1969.5 1170 87.5
Phvul.001G096100 Phaseolus vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1966.4 1172 84.6
Gorai.006G039900 Gossypium raimondii HOM05D005231 ORTHO05D006387 0.0e+00 1964.5 1170 86.8
Gohir.A09G034100 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1962.2 1170 87.4
Gohir.D09G035000 Gossypium hirsutum HOM05D005231 ORTHO05D006387 0.0e+00 1961.8 1170 86.6
Lj1g0000655 Lotus japonicus HOM05D005231 ORTHO05D006387 0.0e+00 1959.9 1172 86.3
Manes.17G106200 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1959.9 1172 84.9
PGR142G3743 Punica granatum HOM05D005231 ORTHO05D006387 0.0e+00 1959.5 1204 86.0
VMungo1215G0650 Vigna mungo HOM05D005231 ORTHO05D006387 0.0e+00 1952.9 1172 84.7
Glyma.16G060500 Glycine max HOM05D005231 ORTHO05D006387 0.0e+00 1952.6 1176 86.1
TWI12G0663 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1951.8 1174 86.9
arahy.Tifrunner.gnm1.ann1.L2Q6WP Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1951.4 1175 85.8
arahy.Tifrunner.gnm1.ann1.M0JNNK Arachis hypogaea HOM05D005231 ORTHO05D006387 0.0e+00 1946.0 1186 85.0
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 0.0e+00 1945.2 1201 85.2
Solyc11g068640.2 Solanum lycopersicum HOM05D005231 ORTHO05D006387 0.0e+00 1944.5 1172 85.6
Sopen11g027360 Solanum pennellii HOM05D005231 ORTHO05D006387 0.0e+00 1944.5 1172 85.6
Nitab4.5_0006008g0040 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1942.9 1172 85.8
Nn4g22395 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1938.7 1091 89.5
Nitab4.5_0000731g0120 Nicotiana tabacum HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1171 85.6
Potri.001G334300 Populus trichocarpa HOM05D005231 ORTHO05D006387 0.0e+00 1937.9 1173 85.9
Migut.K01445 Erythranthe guttata HOM05D005231 ORTHO05D006387 0.0e+00 1934.5 1171 85.3
Aqoxy5G03496 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 0.0e+00 1933.7 1179 85.3
TWI36G1540 Tripterygium wilfordii HOM05D005231 ORTHO05D006387 0.0e+00 1931.4 1172 85.5
CSS0002510 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 0.0e+00 1928.7 1172 87.2
THA.LOC104822412 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 0.0e+00 1924.4 1167 86.5
CAN.G745.7 Capsicum annuum HOM05D005231 ORTHO05D006387 0.0e+00 1923.3 1171 85.0
Sp3g00280 Schrenkiella parvula HOM05D005231 ORTHO05D006387 0.0e+00 1922.9 1173 85.9
Aa31LG5G10910 Aethionema arabicum HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1172 85.8
Sabra16G0215400 Salix brachista HOM05D005231 ORTHO05D006387 0.0e+00 1920.2 1173 84.4
Peaxi162Scf00224g00118 Petunia axillaris HOM05D005231 ORTHO05D006387 0.0e+00 1919.4 1219 81.8
AL3G10350 Arabidopsis lyrata HOM05D005231 ORTHO05D006387 0.0e+00 1918.3 1179 85.8
MSTRG.3095 Avicennia marina HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1172 84.7
Carub.0003s0028 Capsella rubella HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1174 85.3
Thhalv10019930m.g Eutrema salsugineum HOM05D005231 ORTHO05D006387 0.0e+00 1916.4 1175 85.8
C02p47900 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1171 85.5
BolC2t10823H Brassica oleracea HOM05D005231 ORTHO05D006387 0.0e+00 1915.2 1171 85.5
PSO782G5010 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1913.7 1175 84.9
AT3G01780 Arabidopsis thaliana HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1179 85.4
Rhsim08G0045200 Rhododendron simsii HOM05D005231 ORTHO05D006387 0.0e+00 1912.1 1212 82.8
A02p30380 Brassica napus HOM05D005231 ORTHO05D006387 0.0e+00 1911.7 1171 85.1
PSO063G5961 Papaver somniferum HOM05D005231 ORTHO05D006387 0.0e+00 1908.6 1175 84.7
BraA02t08053Z Brassica rapa HOM05D005231 ORTHO05D006387 0.0e+00 1906.0 1171 85.0
CARHR075150 Cardamine hirsuta HOM05D005231 ORTHO05D006387 0.0e+00 1899.8 1190 84.0
HanXRQChr14g0450911 Helianthus annuus HOM05D005231 ORTHO05D006387 0.0e+00 1898.2 1172 84.0
Nn2g10551 Nelumbo nucifera HOM05D005231 ORTHO05D006387 0.0e+00 1897.1 1168 84.5
Sc03g0006820 Simmondsia chinensis HOM05D005231 ORTHO05D006387 0.0e+00 1892.9 1175 84.5
GSVIVG01001825001 Vitis vinifera HOM05D005231 ORTHO05D006387 0.0e+00 1891.7 1160 85.0
Hund15390 Selenicereus undatus HOM05D005231 ORTHO05D006387 0.0e+00 1887.8 1170 84.2
ECA238G4317 Erigeron canadensis HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1172 82.8
Lsat_1_v5_gn_2_93920 Lactuca sativa HOM05D005231 ORTHO05D006387 0.0e+00 1887.1 1170 83.9
SalBow1G7136 Salvia bowleyana HOM05D005231 ORTHO05D006387 0.0e+00 1886.3 1171 81.0
BcaC03g16893 Brassica carinata HOM05D005231 ORTHO05D006387 0.0e+00 1879.0 1097 85.7
Ah.01g004700 Amaranthus hybridus HOM05D005231 ORTHO05D006387 0.0e+00 1858.6 1169 83.9
SGA_v2.0_scaffold47G17578 Striga asiatica HOM05D005231 ORTHO05D006387 0.0e+00 1853.6 1097 84.8
EL10Ac6g14067 Beta vulgaris HOM05D005231 ORTHO05D006387 0.0e+00 1842.0 1176 83.2
vmacro18325 Vaccinium macrocarpon HOM05D005231 ORTHO05D006387 0.0e+00 1815.4 1333 73.9
unitig_21.g20479 Utricularia gibba HOM05D005231 ORTHO05D006387 0.0e+00 1787.7 1172 77.1
DCAR_011305 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1773.8 1184 77.4
SHI03892 Sapria himalayana HOM05D005231 ORTHO05D006387 0.0e+00 1766.9 1172 76.2
ATR0693G284 Amborella trichopoda HOM05D005231 ORTHO05D006387 0.0e+00 1746.5 1169 76.6
AUR62014230 Chenopodium quinoa HOM05D005231 ORTHO05D006387 0.0e+00 1732.6 1067 82.5
SEGI_09869 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 0.0e+00 1696.0 1177 73.8
DCAR_021762 Daucus carota HOM05D005231 ORTHO05D006387 0.0e+00 1640.6 1001 84.1
Os02g0793100 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1639.8 1171 71.0
Zm00001eb201030 Zea mays HOM05D005231 ORTHO05D006387 0.0e+00 1632.5 1172 71.0
Cpa.g.sc130.10 Carica papaya HOM05D005231 ORTHO05D006387 0.0e+00 1606.3 1157 76.5
Medtr7g031450 Medicago truncatula HOM05D005231 ORTHO05D006387 0.0e+00 1594.3 948 86.6
MD14G1190000 Malus domestica HOM05D005231 ORTHO05D006387 0.0e+00 1540.8 846 92.9
Mapoly0078s0040 Marchantia polymorpha HOM05D005231 ORTHO05D006387 0.0e+00 1454.5 1168 64.9
SMO143G0109 Selaginella moellendorffii HOM05D005231 ORTHO05D006387 0.0e+00 1448.0 1163 63.5
Manes.15G157900 Manihot esculenta HOM05D005231 ORTHO05D006387 0.0e+00 1413.3 838 84.7
Pp3c14_16610 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1401.7 1166 62.0
Pp3c2_2820 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1388.6 1167 61.7
Pp3c10_18980 Physcomitrium patens HOM05D005231 ORTHO05D006387 0.0e+00 1373.2 1182 60.7
MBI11_g15863_MAGBIO Magnolia biondii HOM05D005231 ORTHO05D006387 0.0e+00 1352.4 799 85.6
HPP92_011387 Vanilla planifolia HOM05D005231 ORTHO05D006387 0.0e+00 1292.3 797 81.6
Os11g0175900 Oryza sativa ssp. japonica HOM05D005231 ORTHO05D006387 0.0e+00 1216.4 794 77.5
Oeu050426.1 Olea europaea HOM05D005231 ORTHO05D006387 0.0e+00 1139.8 694 84.6
AagrBONN_evm.TU.Sc2ySwM_344.3213 Anthoceros agrestis HOM05D005231 ORTHO05D006387 0.0e+00 1110.9 928 61.3
CBR_g21747 Chara braunii HOM05D005231 ORTHO05D006387 7.2e-311 1070.8 1198 47.1
CDE07G1517 Ceratophyllum demersum HOM05D005231 ORTHO05D006387 1.2e-294 1016.9 659 80.1
CSS0033455 Camellia sinensis var. sinensis HOM05D005231 ORTHO05D006387 3.9e-293 1011.9 576 90.6
AUR62014240 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.9e-287 993.0 743 71.5
CsaV3_3G015930 Cucumis sativus L. HOM05D005231 ORTHO05D006387 4.5e-281 971.8 545 91.4
CsaV3_3G015940 Cucumis sativus L. HOM05D005231 ORTHO05D006387 4.5e-281 971.8 597 83.9
AUR62038506 Chenopodium quinoa HOM05D005231 ORTHO05D006387 1.2e-278 963.8 599 83.8
BcaB01g00417 Brassica carinata HOM05D005231 ORTHO05D006387 6.6e-256 888.3 627 72.6
AUR62038505 Chenopodium quinoa HOM05D005231 ORTHO05D006387 8.0e-254 881.3 517 82.4
Oeu050427.1 Olea europaea HOM05D005231 ORTHO05D006387 6.0e-217 758.8 486 83.1
Zm00001eb091570 Zea mays HOM05D005231 ORTHO05D006387 1.1e-215 754.6 465 79.8
Dinv33367 Davidia involucrata HOM05D005231 ORTHO05D006387 1.1e-210 738.0 401 90.3
Aqoxy5G03474 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 2.8e-153 547.4 356 84.3
Lj1g0013476 Lotus japonicus HOM05D005231 ORTHO05D006387 2.3e-152 544.3 357 80.4
Zm00001eb091560 Zea mays HOM05D005231 ORTHO05D006387 2.4e-117 427.9 377 57.8
Zm00001eb091580 Zea mays HOM05D005231 ORTHO05D006387 4.9e-110 403.7 286 72.4
Dinv33368 Davidia involucrata HOM05D005231 ORTHO05D006387 2.0e-87 328.6 195 83.6
THA.LOC104823986 Tarenaya hassleriana HOM05D005231 ORTHO05D006387 1.4e-64 252.7 168 82.1
Oeu058765.1 Olea europaea HOM05D005231 ORTHO05D006387 3.7e-49 201.4 143 76.2
Aqoxy4G01030 Aquilegia oxysepala HOM05D005231 ORTHO05D006387 1.8e-43 182.6 109 91.7
C04p29360 Brassica napus HOM05D005231 ORTHO05D006387 1.9e-37 162.5 103 86.4
A01p22920 Brassica napus HOM05D005231 ORTHO05D006387 9.5e-37 160.2 109 81.7
BraA03t12406Z Brassica rapa HOM05D002210 ORTHO05D002304 5.2e-35 154.5 78 92.3
Dinv33369 Davidia involucrata HOM05D005231 ORTHO05D006387 8.9e-35 153.7 87 85.1
Lj1P845T37 Lonicera japonica HOM05D005231 ORTHO05D006387 2.7e-31 142.1 96 79.2
SEGI_00772 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 2.0e-18 99.4 110 50.9
SEGI_37350 Sequoiadendron giganteum HOM05D005231 ORTHO05D006387 3.4e-18 98.6 82 61.0
CDE04G2058 Ceratophyllum demersum HOM05D000772 ORTHO05D003239 9.8e-18 97.1 84 69.0
C03p39410 Brassica napus HOM05D005231 ORTHO05D006387 6.0e-15 87.8 104 70.2
TAR626G1446 Trochodendron aralioides HOM05D000199 ORTHO05D015700 2.8e-12 79.0 51 70.6
TAR365G0935 Trochodendron aralioides HOM05D000199 ORTHO05D015700 1.1e-11 77.0 51 66.7
TAR627G1114 Trochodendron aralioides HOM05D005231 ORTHO05D006387 1.4e-11 76.6 51 68.6
MCO15G368 Micromonas commoda HOM05D005231 ORTHO05D006387 4.1e-08 65.1 341 26.4


User provided reference genes

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