Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0180081 Rosa chinensis HOM05D004983 ORTHO05D005847 1.7e-144 516.2 292 100.0
FvH4_5g15990 Fragaria vesca HOM05D004983 ORTHO05D005847 3.9e-125 451.8 293 88.4
FAN18G0171 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.4e-124 447.6 289 88.2
FAN13G0935 Fragaria x ananassa HOM05D004983 ORTHO05D005847 1.3e-123 446.8 289 87.9
FAN04G0333 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.2e-123 446.0 290 83.1
MD06G1184000 Malus domestica HOM05D004983 ORTHO05D005847 5.9e-105 384.8 293 72.0
Prupe.5G182700 Prunus persica HOM05D004983 ORTHO05D005847 1.1e-103 380.6 295 70.2
QL10p014085 Quercus lobata HOM05D004983 ORTHO05D005847 1.1e-100 370.5 293 68.3
Eucgr.B00384 Eucalyptus grandis HOM05D004983 ORTHO05D005847 7.5e-100 367.9 238 76.1
CANSAT80G1912 Cannabis sativa HOM05D004983 ORTHO05D005847 3.1e-98 362.5 250 72.0
Ciclev10021875m.g Citrus clementina HOM05D004983 ORTHO05D005847 2.2e-96 356.3 232 76.3
Potri.012G072800 Populus trichocarpa HOM05D004983 ORTHO05D005847 2.9e-96 355.9 239 74.9
TAR374G1152 Trochodendron aralioides HOM05D000005 ORTHO05D000012 3.8e-96 355.5 287 65.2
CiPaw.12G021900 Carya illinoinensis HOM05D004983 ORTHO05D005847 1.5e-95 353.6 293 68.6
VMungo1309G2496 Vigna mungo HOM05D004983 ORTHO05D005847 2.5e-95 352.8 239 75.3
Haze_07411 Corylus avellana HOM05D004983 ORTHO05D005847 4.2e-95 352.1 244 75.4
GSVIVG01008095001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.6e-94 350.1 233 75.1
Sabra12G0052000 Salix brachista HOM05D004983 ORTHO05D005847 6.1e-94 348.2 247 72.5
Phvul.009G183500 Phaseolus vulgaris HOM05D004983 ORTHO05D005847 3.0e-93 345.9 235 74.5
CsaV3_1G001940 Cucumis sativus L. HOM05D004983 ORTHO05D005847 4.0e-93 345.5 249 71.1
Oeu022186.1 Olea europaea HOM05D004983 ORTHO05D005847 6.8e-93 344.7 236 75.8
PGR044G0258 Punica granatum HOM05D004983 ORTHO05D005847 6.8e-93 344.7 230 74.3
Hma1.2p1_0572F.1_g181120 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 2.0e-92 343.2 227 75.3
Glyma.06G188000 Glycine max HOM05D004983 ORTHO05D005847 2.6e-92 342.8 239 73.2
Lalb_Chr08g0236081 Lupinus albus HOM05D004983 ORTHO05D005847 2.6e-92 342.8 243 72.0
Manes.06G098600 Manihot esculenta HOM05D004983 ORTHO05D005847 2.6e-92 342.8 244 73.4
Atru.chr9.2363 Acer truncatum HOM05D004983 ORTHO05D005847 4.4e-92 342.0 242 71.1
Thecc.K0001100 Theobroma cacao HOM05D004983 ORTHO05D005847 1.1e-90 337.4 251 70.9
Medtr0168s0080 Medicago truncatula HOM05D004983 ORTHO05D005847 4.1e-90 335.5 243 71.2
Gohir.D10G187500 Gossypium hirsutum HOM05D004983 ORTHO05D005847 5.4e-90 335.1 240 72.5
arahy.Tifrunner.gnm1.ann1.GD66SW Arachis hypogaea HOM05D004983 ORTHO05D005847 1.6e-89 333.6 243 69.5
Glyma.04G177000 Glycine max HOM05D004983 ORTHO05D005847 1.6e-89 333.6 239 72.0
TPR.G37260 Trifolium pratense HOM05D004983 ORTHO05D005847 1.6e-89 333.6 247 71.3
COL.COLO4_20718 Corchorus olitorius HOM05D004983 ORTHO05D005847 2.0e-89 333.2 232 73.3
AUR62021780 Chenopodium quinoa HOM05D004983 ORTHO05D005847 4.5e-89 332.0 228 73.7
QL03p067725 Quercus lobata HOM05D004983 ORTHO05D005847 7.7e-89 331.3 243 68.7
QL03p067716 Quercus lobata HOM05D004983 ORTHO05D005847 1.7e-88 330.1 242 68.2
Aa31LG3G14620 Aethionema arabicum HOM05D004983 ORTHO05D005847 5.0e-88 328.6 246 65.0
Lsat_1_v5_gn_1_11380 Lactuca sativa HOM05D004983 ORTHO05D005847 5.0e-88 328.6 234 70.5
AUR62008315 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.5e-87 326.2 230 71.7
arahy.Tifrunner.gnm1.ann1.TQ2Z41 Arachis hypogaea HOM05D004983 ORTHO05D005847 3.2e-87 325.9 235 71.5
Cc04_g16050 Coffea canephora HOM05D004983 ORTHO05D005847 3.2e-87 325.9 235 71.9
Duzib205G0093 Durio zibethinus HOM05D004983 ORTHO05D005847 4.2e-87 325.5 238 69.7
Thhalv10014312m.g Eutrema salsugineum HOM05D004983 ORTHO05D005847 9.5e-87 324.3 236 66.1
vmacro19336 Vaccinium macrocarpon HOM05D004983 ORTHO05D005847 1.2e-86 323.9 283 60.4
Nitab4.5_0008162g0040 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.1e-86 323.2 235 67.7
CSS0013980 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 2.7e-86 322.8 243 67.1
PSO591G0429 Papaver somniferum HOM05D004983 ORTHO05D005847 2.7e-86 322.8 231 70.6
Hund04599 Selenicereus undatus HOM05D004983 ORTHO05D005847 2.7e-86 322.8 260 64.6
CAN.G999.9 Capsicum annuum HOM05D004983 ORTHO05D005847 4.7e-86 322.0 226 69.9
C09p64060 Brassica napus HOM05D004983 ORTHO05D005847 8.0e-86 321.2 235 67.2
Dinv13111 Davidia involucrata HOM05D004983 ORTHO05D005847 8.0e-86 321.2 243 70.4
Nitab4.5_0000026g0320 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.0e-86 321.2 235 67.7
Aqoxy3G00847 Aquilegia oxysepala HOM05D004983 ORTHO05D005847 1.0e-85 320.9 242 66.9
PGSC0003DMG400024570 Solanum tuberosum HOM05D004983 ORTHO05D005847 2.3e-85 319.7 231 69.3
Sp6g30930 Schrenkiella parvula HOM05D004983 ORTHO05D005847 4.0e-85 318.9 237 64.1
CARHR200420 Cardamine hirsuta HOM05D004983 ORTHO05D005847 5.2e-85 318.5 245 65.7
Solyc03g113590.3 Solanum lycopersicum HOM05D004983 ORTHO05D005847 5.2e-85 318.5 231 69.3
SGA_v2.0_scaffold25G10860 Striga asiatica HOM05D004983 ORTHO05D005847 5.2e-85 318.5 223 73.5
Sopen03g032630 Solanum pennellii HOM05D004983 ORTHO05D005847 6.8e-85 318.2 231 68.8
AL6G23630 Arabidopsis lyrata HOM05D004983 ORTHO05D005847 1.2e-84 317.4 237 65.0
A10p25150 Brassica napus HOM05D004983 ORTHO05D005847 1.2e-84 317.4 235 66.4
BolC9t59243H Brassica oleracea HOM05D004983 ORTHO05D005847 1.2e-84 317.4 235 66.4
EL10Ac5g10876 Beta vulgaris HOM05D004983 ORTHO05D005847 2.6e-84 316.2 226 71.7
Nn4g22978 Nelumbo nucifera HOM05D004983 ORTHO05D005847 2.6e-84 316.2 283 60.4
AT5G13050 Arabidopsis thaliana HOM05D004983 ORTHO05D005847 4.4e-84 315.5 237 65.0
BraA10t44577Z Brassica rapa HOM05D004983 ORTHO05D005847 4.4e-84 315.5 235 66.0
Actinidia04943 Actinidia chinensis HOM05D004983 ORTHO05D005847 5.7e-84 315.1 233 68.7
DCAR_016523 Daucus carota HOM05D004983 ORTHO05D005847 1.3e-83 313.9 237 67.1
Sc12g0005910 Simmondsia chinensis HOM05D004983 ORTHO05D005847 2.8e-83 312.8 235 68.1
A02p01650 Brassica napus HOM05D001227 ORTHO05D001082 6.3e-83 311.6 235 63.8
Carub.0006s1121 Capsella rubella HOM05D004983 ORTHO05D005847 6.3e-83 311.6 236 65.3
TPR.G19166 Trifolium pratense HOM05D004983 ORTHO05D005847 8.3e-83 311.2 215 73.0
Dinv19894 Davidia involucrata HOM05D004983 ORTHO05D005847 1.4e-82 310.5 241 68.0
BraA02t05144Z Brassica rapa HOM05D001227 ORTHO05D001082 1.8e-82 310.1 237 62.9
Gohir.D12G050100 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.4e-82 309.7 242 65.3
Haze_12108 Corylus avellana HOM05D004983 ORTHO05D005847 3.1e-82 309.3 243 63.0
HanXRQChr02g0045351 Helianthus annuus HOM05D004983 ORTHO05D005847 3.1e-82 309.3 230 67.8
Migut.I00071 Erythranthe guttata HOM05D004983 ORTHO05D005847 4.1e-82 308.9 225 68.9
Rhsim08G0163200 Rhododendron simsii HOM05D004983 ORTHO05D005847 4.1e-82 308.9 302 56.0
Ciclev10032272m.g Citrus clementina HOM05D004983 ORTHO05D005847 7.0e-82 308.1 227 67.8
Gorai.008G053300 Gossypium raimondii HOM05D004983 ORTHO05D005847 2.0e-81 306.6 242 64.9
arahy.Tifrunner.gnm1.ann1.G2IRY3 Arachis hypogaea HOM05D004983 ORTHO05D005847 2.7e-81 306.2 236 64.4
Gohir.A12G051800 Gossypium hirsutum HOM05D004983 ORTHO05D005847 2.7e-81 306.2 230 66.5
BolC2t06531H Brassica oleracea HOM05D004983 ORTHO05D005847 4.5e-81 305.4 237 62.4
Prupe.1G263300 Prunus persica HOM05D004983 ORTHO05D005847 1.0e-80 304.3 242 64.5
TWI75G1117 Tripterygium wilfordii HOM05D004983 ORTHO05D005847 3.8e-80 302.4 225 67.1
arahy.Tifrunner.gnm1.ann1.N4VW2L Arachis hypogaea HOM05D004983 ORTHO05D005847 5.0e-80 302.0 245 61.6
CiPaw.05G143400 Carya illinoinensis HOM05D004983 ORTHO05D005847 5.0e-80 302.0 237 65.4
BcaNung01856 Brassica carinata HOM05D001227 ORTHO05D001082 6.6e-80 301.6 235 62.6
C02p05860 Brassica napus HOM05D001227 ORTHO05D001082 6.6e-80 301.6 235 62.6
Lj1g0016910 Lotus japonicus HOM05D004983 ORTHO05D005847 6.6e-80 301.6 199 77.4
Ah.02g112940 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.1e-79 300.8 225 68.9
ECA247G1770 Erigeron canadensis HOM05D004983 ORTHO05D005847 1.1e-79 300.8 272 59.6
FvH4_4g35410 Fragaria vesca HOM05D004983 ORTHO05D005847 3.3e-79 299.3 241 62.7
Thecc.02G237100 Theobroma cacao HOM05D004983 ORTHO05D005847 5.6e-79 298.5 244 62.7
Atru.chr11.1914 Acer truncatum HOM05D004983 ORTHO05D005847 3.6e-78 295.8 222 67.1
Ah.11g048970 Amaranthus hybridus HOM05D004983 ORTHO05D005847 1.0e-77 294.3 249 62.7
Ah.02g112900 Amaranthus hybridus HOM05D004983 ORTHO05D005847 6.8e-77 291.6 230 65.7
ATR0665G657 Amborella trichopoda HOM05D004983 ORTHO05D005847 2.0e-76 290.0 229 65.9
HPP92_026476 Vanilla planifolia HOM05D004983 ORTHO05D005847 1.3e-75 287.3 231 63.6
Zm00001eb107660 Zea mays HOM05D004983 ORTHO05D005847 1.7e-75 287.0 222 66.2
FAN07G1154 Fragaria x ananassa HOM05D004983 ORTHO05D005847 2.9e-75 286.2 267 55.8
Os07g0578600 Oryza sativa ssp. japonica HOM05D004983 ORTHO05D005847 2.9e-75 286.2 221 65.6
RcHm_v2.0_Chr4g0445021 Rosa chinensis HOM05D004983 ORTHO05D005847 2.9e-75 286.2 241 61.0
HPP92_014218 Vanilla planifolia HOM05D004983 ORTHO05D005847 3.7e-75 285.8 231 63.6
MELO3C017137.2 Cucumis melo HOM05D004983 ORTHO05D005847 8.3e-75 284.6 253 63.6
Peaxi162Scf00017g02122 Petunia axillaris HOM05D004983 ORTHO05D005847 9.2e-74 281.2 240 62.1
Gorai.011G210300 Gossypium raimondii HOM05D004983 ORTHO05D005847 1.6e-73 280.4 238 62.6
Peaxi162Scf00496g00013 Petunia axillaris HOM05D004983 ORTHO05D005847 2.0e-73 280.0 215 65.1
CDE07G0592 Ceratophyllum demersum HOM05D004983 ORTHO05D005847 4.6e-73 278.9 229 61.1
AUR62021779 Chenopodium quinoa HOM05D004983 ORTHO05D005847 2.3e-72 276.6 196 71.4
unitig_27.g25109 Utricularia gibba HOM05D000870 ORTHO05D005847 6.8e-69 265.0 195 68.2
BcaNung01178 Brassica carinata HOM05D004983 ORTHO05D005847 5.8e-68 261.9 264 53.4
FAN22G0524 Fragaria x ananassa HOM05D004983 ORTHO05D005847 7.5e-68 261.5 245 55.5
FAN12G3769 Fragaria x ananassa HOM05D004983 ORTHO05D005847 6.4e-67 258.5 280 51.1
MD16G1082800 Malus domestica HOM05D004983 ORTHO05D005847 8.3e-67 258.1 243 56.8
Duzib251G0645 Durio zibethinus HOM05D004983 ORTHO05D005847 1.4e-66 257.3 199 65.8
Sed0011699 Sechium edule HOM05D004983 ORTHO05D005847 3.9e-64 249.2 172 73.3
Psat5g181720 Pisum sativum HOM05D004983 ORTHO05D005847 6.2e-62 241.9 144 82.6
SMO271G0141 Selaginella moellendorffii HOM05D004983 ORTHO05D005847 6.2e-62 241.9 222 57.7
Cpa.g.sc203.7 Carica papaya HOM05D004983 ORTHO05D005847 1.4e-61 240.7 234 54.7
Nn4g24106 Nelumbo nucifera HOM05D004983 ORTHO05D005847 4.0e-61 239.2 238 56.3
Mapoly0019s0150 Marchantia polymorpha HOM05D004983 ORTHO05D005847 6.8e-61 238.4 226 54.9
Nitab4.5_0002376g0010 Nicotiana tabacum HOM05D004983 ORTHO05D005847 8.9e-61 238.0 264 51.1
AagrBONN_evm.TU.Sc2ySwM_362.273 Anthoceros agrestis HOM05D004983 ORTHO05D005847 3.4e-60 236.1 217 57.6
SalBow5G1630 Salvia bowleyana HOM05D004983 ORTHO05D005847 4.9e-59 232.3 231 58.0
Gohir.A10G180700 Gossypium hirsutum HOM05D004983 ORTHO05D005847 1.9e-58 230.3 149 75.8
CSS0025366 Camellia sinensis var. sinensis HOM05D004983 ORTHO05D005847 1.2e-57 227.6 152 73.7
Dinv31146 Davidia involucrata HOM05D004983 ORTHO05D005847 1.1e-55 221.1 151 71.5
Lj9A456T34 Lonicera japonica HOM05D004983 ORTHO05D005847 4.3e-55 219.2 143 75.5
Atru.chr11.1910 Acer truncatum HOM05D004983 ORTHO05D005847 3.1e-53 213.0 152 68.4
Nitab4.5_0000642g0190 Nicotiana tabacum HOM05D004983 ORTHO05D005847 5.2e-53 212.2 226 54.0
Nitab4.5_0000710g0080 Nicotiana tabacum HOM05D004983 ORTHO05D005847 2.5e-47 193.4 160 61.9
Nitab4.5_0009486g0020 Nicotiana tabacum HOM05D004983 ORTHO05D005847 3.1e-45 186.4 146 65.8
CBR_g34194 Chara braunii HOM05D004983 ORTHO05D005847 5.8e-44 182.2 223 44.8
Pp3c3_32060 Physcomitrium patens HOM05D004983 ORTHO05D005847 7.1e-42 175.3 172 52.3
Pp3c12_22470 Physcomitrium patens HOM05D004983 ORTHO05D005847 5.6e-39 165.6 155 54.2
SEGI_36548 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 8.1e-38 161.8 136 58.1
GSVIVG01020126001 Vitis vinifera HOM05D004983 ORTHO05D005847 1.1e-37 161.4 129 65.9
Hma1.2p1_4120F.1_g338320 Hydrangea macrophylla HOM05D004983 ORTHO05D005847 9.3e-34 148.3 96 74.0
Cre09.g403293 Chlamydomonas reinhardtii HOM05D004983 ORTHO05D005847 2.7e-33 146.7 210 42.4
FAN17G3002 Fragaria x ananassa HOM05D004983 ORTHO05D005847 3.1e-29 133.3 123 55.3
SEGI_02343 Sequoiadendron giganteum HOM05D004983 ORTHO05D005847 7.1e-26 122.1 96 63.5
MCO01G728 Micromonas commoda HOM05D004983 ORTHO05D005847 1.0e-24 118.2 243 35.4
ClCG06G016570 Citrullus lanatus HOM05D004983 ORTHO05D005847 3.0e-24 116.7 77 72.7
Atru.chr11.1911 Acer truncatum HOM05D004983 ORTHO05D005847 2.5e-23 113.6 91 62.6
Psat0s864g0040 Pisum sativum HOM05D004983 ORTHO05D005847 5.6e-23 112.5 116 55.2
PRCOL_00002663 Prasinoderma coloniale HOM05D004983 ORTHO05D005847 2.6e-20 103.6 232 32.8
Nitab4.5_0000710g0100 Nicotiana tabacum HOM05D004983 ORTHO05D005847 1.2e-12 78.2 64 57.8
Cfa021669 Carpinus fangiana HOM05D004983 ORTHO05D005847 2.2e-06 57.4 182 28.0
Hund25310 Selenicereus undatus HOM05D004983 ORTHO05D005847 8.2e-06 55.5 165 29.1


User provided reference genes

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