Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0179521 Rosa chinensis HOM05D004802 ORTHO05D005591 6.4e-73 277.3 142 100.0
Prupe.5G177600 Prunus persica HOM05D004802 ORTHO05D005591 8.4e-65 250.4 142 89.4
FvH4_5g16620 Fragaria vesca HOM05D004802 ORTHO05D005591 1.2e-63 246.5 142 88.7
FAN18G4009 Fragaria x ananassa HOM05D004802 ORTHO05D005591 3.5e-63 245.0 142 88.0
MD14G1184900 Malus domestica HOM05D004802 ORTHO05D005591 6.0e-63 244.2 142 85.9
FAN08G2523 Fragaria x ananassa HOM05D004802 ORTHO05D005591 1.9e-61 239.2 140 87.1
FAN13G0264 Fragaria x ananassa HOM05D004802 ORTHO05D005591 4.8e-60 234.6 142 85.9
Hma1.2p1_0483F.1_g162710 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 4.8e-60 234.6 141 84.4
Potri.014G111100 Populus trichocarpa HOM05D004802 ORTHO05D005591 1.2e-58 229.9 143 81.8
Cfa019082 Carpinus fangiana HOM05D004802 ORTHO05D005591 2.6e-58 228.8 141 81.6
MSTRG.23103 Avicennia marina HOM05D004802 ORTHO05D005591 1.0e-57 226.9 142 82.4
HanXRQChr05g0155531 Helianthus annuus HOM05D004802 ORTHO05D005591 1.0e-57 226.9 144 81.9
ECA232G0284 Erigeron canadensis HOM05D004802 ORTHO05D005591 2.2e-57 225.7 144 81.2
Aqoxy5G00387 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 3.8e-57 224.9 144 81.2
PGR083G1798 Punica granatum HOM05D004802 ORTHO05D005591 5.0e-57 224.6 143 79.7
QL03p066954 Quercus lobata HOM05D004802 ORTHO05D005591 5.0e-57 224.6 140 80.7
Manes.12G158200 Manihot esculenta HOM05D004802 ORTHO05D005591 6.5e-57 224.2 141 80.1
SGA_v2.0_scaffold114G31844 Striga asiatica HOM05D004802 ORTHO05D005591 6.5e-57 224.2 142 81.7
CSS0033619 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 8.5e-57 223.8 144 79.9
Migut.D01783 Erythranthe guttata HOM05D004802 ORTHO05D005591 1.9e-56 222.6 142 80.3
Lsat_1_v5_gn_5_17000 Lactuca sativa HOM05D004802 ORTHO05D005591 1.9e-56 222.6 144 80.6
MBI19_g12136_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 1.9e-56 222.6 143 79.0
TAR362G1012 Trochodendron aralioides HOM05D004802 ORTHO05D005591 2.5e-56 222.2 143 79.7
vmacro16596 Vaccinium macrocarpon HOM05D004802 ORTHO05D005591 2.5e-56 222.2 145 78.6
HanXRQChr05g0163301 Helianthus annuus HOM05D004802 ORTHO05D005591 3.2e-56 221.9 144 81.2
HanXRQChr05g0163571 Helianthus annuus HOM05D004802 ORTHO05D005591 3.2e-56 221.9 144 81.2
ATR0796G060 Amborella trichopoda HOM05D004802 ORTHO05D005591 4.2e-56 221.5 141 78.7
CsaV3_1G001710 Cucumis sativus L. HOM05D004802 ORTHO05D005591 4.2e-56 221.5 144 79.2
DCAR_016496 Daucus carota HOM05D004802 ORTHO05D005591 7.2e-56 220.7 143 79.0
Eucgr.B00348 Eucalyptus grandis HOM05D004802 ORTHO05D005591 7.2e-56 220.7 146 79.5
Aqoxy3G02494 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.2e-55 219.9 143 79.7
GSVIVG01007807001 Vitis vinifera HOM05D004802 ORTHO05D005591 1.6e-55 219.5 141 78.7
DCAR_021562 Daucus carota HOM05D004802 ORTHO05D005591 2.1e-55 219.2 143 79.7
Cpa.g.sc110.33 Carica papaya HOM05D004802 ORTHO05D005591 6.1e-55 217.6 144 78.5
Glyma.04G171700 Glycine max HOM05D004802 ORTHO05D005591 1.0e-54 216.9 144 78.5
Actinidia34948 Actinidia chinensis HOM05D004802 ORTHO05D005591 3.0e-54 215.3 132 83.3
CDE01G0824 Ceratophyllum demersum HOM05D004802 ORTHO05D005591 3.9e-54 214.9 145 76.6
MBI18_g21823_MAGBIO Magnolia biondii HOM05D004802 ORTHO05D005591 3.9e-54 214.9 145 80.0
Rhsim12G0162600 Rhododendron simsii HOM05D004802 ORTHO05D005591 3.9e-54 214.9 144 76.4
Sed0010100 Sechium edule HOM05D004802 ORTHO05D005591 5.1e-54 214.5 144 75.7
Actinidia19087 Actinidia chinensis HOM05D004802 ORTHO05D005591 2.5e-53 212.2 130 83.1
CANSAT80G2080 Cannabis sativa HOM05D004802 ORTHO05D005591 2.5e-53 212.2 144 76.4
Cc00_g03600 Coffea canephora HOM05D004802 ORTHO05D005591 2.5e-53 212.2 147 75.5
Glyma.06G192200 Glycine max HOM05D004802 ORTHO05D005591 3.3e-53 211.8 143 76.9
Sc16g0001640 Simmondsia chinensis HOM05D004802 ORTHO05D005591 3.3e-53 211.8 145 75.9
LjContig00081g0027263 Lotus japonicus HOM05D004802 ORTHO05D005591 7.4e-53 210.7 142 76.8
SalBow2G1273 Salvia bowleyana HOM05D004802 ORTHO05D005591 7.4e-53 210.7 143 79.0
Solyc03g114050.3 Solanum lycopersicum HOM05D004802 ORTHO05D005591 7.4e-53 210.7 141 77.3
Sopen03g033100 Solanum pennellii HOM05D004802 ORTHO05D005591 7.4e-53 210.7 141 77.3
unitig_27.g24928 Utricularia gibba HOM05D004802 ORTHO05D005591 7.4e-53 210.7 143 76.2
Lalb_Chr23g0265291 Lupinus albus HOM05D004802 ORTHO05D005591 1.6e-52 209.5 151 72.2
Sc12g0005500 Simmondsia chinensis HOM05D004802 ORTHO05D005591 1.6e-52 209.5 144 72.2
Dinv41117 Davidia involucrata HOM05D001600 ORTHO05D001502 2.2e-52 209.1 132 81.1
Oeu026523.1 Olea europaea HOM05D004802 ORTHO05D005591 2.8e-52 208.8 145 75.9
MD06G1178500 Malus domestica HOM05D004802 ORTHO05D005591 3.7e-52 208.4 113 91.2
Peaxi162Scf00689g00332 Petunia axillaris HOM05D004802 ORTHO05D005591 4.8e-52 208.0 141 76.6
TPR.G20968 Trifolium pratense HOM05D004802 ORTHO05D005591 4.8e-52 208.0 141 75.9
TPR.G6374 Trifolium pratense HOM05D004802 ORTHO05D005591 4.8e-52 208.0 141 77.3
Ca_06425_v3 Cicer arietinum L. HOM05D000308 ORTHO05D000194 6.3e-52 207.6 111 91.0
Manes.15G185900 Manihot esculenta HOM05D004802 ORTHO05D005591 6.3e-52 207.6 141 78.0
COL.COLO4_24762 Corchorus olitorius HOM05D004802 ORTHO05D005591 1.1e-51 206.8 144 78.5
HPP92_014441 Vanilla planifolia HOM05D004802 ORTHO05D005591 1.1e-51 206.8 136 77.9
Psat2g170440 Pisum sativum HOM05D004802 ORTHO05D005591 1.4e-51 206.5 144 74.3
arahy.Tifrunner.gnm1.ann1.H02ACK Arachis hypogaea HOM05D004802 ORTHO05D005591 1.8e-51 206.1 146 73.3
arahy.Tifrunner.gnm1.ann1.J5PS4T Arachis hypogaea HOM05D004802 ORTHO05D005591 1.8e-51 206.1 146 73.3
Nitab4.5_0000499g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 1.8e-51 206.1 144 75.0
Medtr5g015850 Medicago truncatula HOM05D004802 ORTHO05D005591 3.1e-51 205.3 141 77.3
EL10Ac7g17734 Beta vulgaris HOM05D004802 ORTHO05D005591 4.1e-51 204.9 141 74.5
Sp1g06517 Schrenkiella parvula HOM05D004802 ORTHO05D005591 4.1e-51 204.9 144 72.2
Thecc.03G006700 Theobroma cacao HOM05D004802 ORTHO05D005591 4.1e-51 204.9 142 78.2
TWI32G0003 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 4.1e-51 204.9 144 76.4
Ah.08g213760 Amaranthus hybridus HOM05D004802 ORTHO05D005591 5.3e-51 204.5 141 73.8
CARHR007640 Cardamine hirsuta HOM05D004802 ORTHO05D005591 5.3e-51 204.5 144 74.3
AL1G18110 Arabidopsis lyrata HOM05D004802 ORTHO05D005591 6.9e-51 204.1 144 72.2
AT1G07830 Arabidopsis thaliana HOM05D004802 ORTHO05D005591 6.9e-51 204.1 145 73.8
Potri.002G185800 Populus trichocarpa HOM05D004802 ORTHO05D005591 6.9e-51 204.1 145 72.4
A09p66160 Brassica napus HOM05D004802 ORTHO05D005591 9.1e-51 203.8 144 72.9
BraA09t41954Z Brassica rapa HOM05D004802 ORTHO05D005591 9.1e-51 203.8 144 72.9
THA.LOC104818227 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 9.1e-51 203.8 146 72.6
THA.LOC104821462 Tarenaya hassleriana HOM05D004802 ORTHO05D005591 9.1e-51 203.8 147 74.8
Aqoxy3G01788 Aquilegia oxysepala HOM05D004802 ORTHO05D005591 1.2e-50 203.4 146 72.6
BolC5t29353H Brassica oleracea HOM05D000129 ORTHO05D005591 1.2e-50 203.4 145 73.1
Duzib068G0850 Durio zibethinus HOM05D004802 ORTHO05D005591 1.2e-50 203.4 148 75.7
BcaC07g41973 Brassica carinata HOM05D004802 ORTHO05D005591 1.5e-50 203.0 148 72.3
C08p50320 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-50 203.0 148 72.3
BolC8t52561H Brassica oleracea HOM05D004802 ORTHO05D005591 1.5e-50 203.0 148 72.3
Hund18328 Selenicereus undatus HOM05D004802 ORTHO05D005591 1.5e-50 203.0 140 75.7
FAN04G1836 Fragaria x ananassa HOM05D004802 ORTHO05D005591 2.0e-50 202.6 117 87.2
VMungo1309G2385 Vigna mungo HOM05D004802 ORTHO05D005591 2.0e-50 202.6 143 74.1
BraA06t23701Z Brassica rapa HOM05D004802 ORTHO05D005591 2.6e-50 202.2 145 72.4
Ciclev10022742m.g Citrus clementina HOM05D004802 ORTHO05D005591 2.6e-50 202.2 146 76.7
PSO170G0191 Papaver somniferum HOM05D004802 ORTHO05D005591 2.6e-50 202.2 148 70.3
Atru.chr9.2421 Acer truncatum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 152 70.4
Aa31LG3G15940 Aethionema arabicum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 113 86.7
Carub.0005s0629 Capsella rubella HOM05D004802 ORTHO05D005591 3.4e-50 201.8 145 71.0
AUR62025410 Chenopodium quinoa HOM05D004802 ORTHO05D005591 3.4e-50 201.8 143 73.4
PSO782G1633 Papaver somniferum HOM05D004802 ORTHO05D005591 3.4e-50 201.8 148 70.3
TWI75G1644 Tripterygium wilfordii HOM05D004802 ORTHO05D005591 3.4e-50 201.8 144 75.7
Phvul.009G188900 Phaseolus vulgaris HOM05D004802 ORTHO05D005591 4.5e-50 201.4 143 73.4
AUR62008830 Chenopodium quinoa HOM05D004802 ORTHO05D005591 1.0e-49 200.3 135 75.6
SEGI_23384 Sequoiadendron giganteum HOM05D004802 ORTHO05D005591 1.3e-49 199.9 141 73.0
Cpa.g.sc170.28 Carica papaya HOM05D004802 ORTHO05D005591 2.2e-49 199.1 133 75.9
PGSC0003DMG400024483 Solanum tuberosum HOM05D004802 ORTHO05D005591 2.9e-49 198.7 143 72.7
ECA246G1319 Erigeron canadensis HOM05D004802 ORTHO05D005591 3.8e-49 198.4 165 66.1
BcaB02g06722 Brassica carinata HOM05D004802 ORTHO05D005591 8.5e-49 197.2 147 70.1
Thhalv10014955m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.9e-48 196.1 113 84.1
BcaC07g42500 Brassica carinata HOM05D004802 ORTHO05D005591 2.5e-48 195.7 148 72.3
C05p05910 Brassica napus HOM05D005594 ORTHO05D006403 3.2e-48 195.3 140 72.9
Gohir.A12G276300 Gossypium hirsutum HOM05D004802 ORTHO05D005591 7.2e-48 194.1 110 87.3
Gorai.008G297400 Gossypium raimondii HOM05D004802 ORTHO05D005591 7.2e-48 194.1 110 87.3
Thhalv10009035m.g Eutrema salsugineum HOM05D004802 ORTHO05D005591 1.6e-47 193.0 145 69.0
arahy.Tifrunner.gnm1.ann1.RYE93B Arachis hypogaea HOM05D004802 ORTHO05D005591 2.7e-47 192.2 170 62.9
Gohir.D12G276900 Gossypium hirsutum HOM05D004802 ORTHO05D005591 2.7e-47 192.2 110 86.4
Peaxi162Scf00017g02344 Petunia axillaris HOM05D004802 ORTHO05D005591 2.7e-47 192.2 146 69.9
Rhsim08G0169000 Rhododendron simsii HOM05D004802 ORTHO05D005591 2.7e-47 192.2 172 59.9
Dinv25814 Davidia involucrata HOM05D004802 ORTHO05D005591 6.1e-47 191.0 120 77.5
Hma1.2p1_2640F.1_g325880 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.0e-46 188.7 113 82.3
Zm00001eb378540 Zea mays HOM05D004802 ORTHO05D005591 3.0e-46 188.7 143 69.2
Nitab4.5_0001422g0100 Nicotiana tabacum HOM05D004802 ORTHO05D005591 3.9e-46 188.3 110 82.7
MELO3C017111.2 Cucumis melo HOM05D004802 ORTHO05D005591 2.0e-45 186.0 220 51.8
Os06g0128500 Oryza sativa ssp. japonica HOM05D004802 ORTHO05D005591 5.7e-45 184.5 113 80.5
RcHm_v2.0_Chr3g0484411 Rosa chinensis HOM05D004802 ORTHO05D005591 5.9e-42 174.5 90 95.6
Haze_07452 Corylus avellana HOM05D004802 ORTHO05D005591 5.0e-41 171.4 108 76.9
QL10p013461 Quercus lobata HOM05D004802 ORTHO05D005591 8.5e-41 170.6 95 88.4
CiPaw.11G030400 Carya illinoinensis HOM05D004802 ORTHO05D005591 2.5e-40 169.1 105 79.0
Nitab4.5_0008768g0020 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.5e-40 169.1 204 50.5
ClCG06G016810 Citrullus lanatus HOM05D004802 ORTHO05D005591 9.4e-40 167.2 92 89.1
QL03p067058 Quercus lobata HOM05D004802 ORTHO05D005591 4.7e-39 164.9 88 90.9
Cc00_g07690 Coffea canephora HOM05D004802 ORTHO05D005591 8.2e-36 154.1 109 71.6
Pp3c17_20320 Physcomitrium patens HOM05D004802 ORTHO05D005591 7.2e-32 141.0 140 53.6
Nn2g12605 Nelumbo nucifera HOM05D004802 ORTHO05D005591 9.4e-32 140.6 98 73.5
Cc00_g30360 Coffea canephora HOM05D004802 ORTHO05D005591 2.7e-31 139.0 112 64.3
Mapoly0009s0030 Marchantia polymorpha HOM05D004802 ORTHO05D005591 9.7e-29 130.6 141 53.9
Nitab4.5_0000003g0430 Nicotiana tabacum HOM05D004802 ORTHO05D005591 2.2e-28 129.4 145 55.2
CBR_g30055 Chara braunii HOM05D004802 ORTHO05D005591 2.7e-26 122.5 121 56.2
RcHm_v2.0_Chr3g0484341 Rosa chinensis HOM05D004802 ORTHO05D005591 3.5e-26 122.1 63 98.4
Hma1.2p1_0107F.1_g051480 Hydrangea macrophylla HOM05D004802 ORTHO05D005591 3.0e-22 109.0 60 91.7
AagrBONN_evm.TU.Sc2ySwM_368.3252 Anthoceros agrestis HOM05D004802 ORTHO05D005591 2.8e-20 102.4 99 54.5
SMO228G0088 Selaginella moellendorffii HOM05D004802 ORTHO05D005591 1.8e-19 99.8 86 53.5
RcHm_v2.0_Chr2g0130991 Rosa chinensis HOM05D004802 ORTHO05D005591 7.0e-19 97.8 65 76.9
SHI01132 Sapria himalayana HOM05D004802 ORTHO05D005591 3.5e-18 95.5 89 58.4
RcHm_v2.0_Chr3g0484351 Rosa chinensis HOM05D004802 ORTHO05D005591 1.2e-13 80.5 43 95.3
A06p04970 Brassica napus HOM05D004802 ORTHO05D005591 1.5e-13 80.1 113 44.2
MCO15G004 Micromonas commoda HOM05D004802 ORTHO05D005591 9.8e-13 77.4 131 42.0
Pp3c14_16960 Physcomitrium patens HOM05D004802 ORTHO05D005591 1.3e-12 77.0 63 60.3
Haze_26898 Corylus avellana HOM05D004802 ORTHO05D005591 1.7e-12 76.6 87 43.7
A09p37440 Brassica napus HOM05D004802 ORTHO05D005591 5.0e-09 65.1 48 66.7
CSS0004783 Camellia sinensis var. sinensis HOM05D004802 ORTHO05D005591 5.0e-09 65.1 60 60.0
Haze_07453 Corylus avellana HOM05D004802 ORTHO05D005591 1.5e-08 63.5 35 88.6
Cfa024847 Carpinus fangiana HOM05D004802 ORTHO05D005591 6.1e-07 58.2 72 43.1
PRCOL_00002926 Prasinoderma coloniale HOM05D004802 ORTHO05D005591 1.8e-06 56.6 117 38.5
BcaC02g11004 Brassica carinata HOM05D004802 ORTHO05D005591 4.0e-06 55.5 43 65.1
C04p22280 Brassica napus HOM05D004802 ORTHO05D020149 4.0e-06 55.5 43 65.1
SHI01130 Sapria himalayana HOM05D004802 ORTHO05D005591 6.8e-06 54.7 54 55.6


User provided reference genes

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