Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0179071 Rosa chinensis HOM05D006376 ORTHO05D008046 2.1e-132 475.7 240 100.0
FvH4_5g16950 Fragaria vesca HOM05D006376 ORTHO05D008046 1.1e-122 443.4 240 92.5
FAN18G1549 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.1e-122 443.4 240 92.5
FAN08G1323 Fragaria x ananassa HOM05D006376 ORTHO05D008046 8.2e-121 437.2 240 92.1
FAN04G0856 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.4e-120 436.4 240 91.2
FAN13G1861 Fragaria x ananassa HOM05D006376 ORTHO05D008046 1.6e-119 433.0 240 90.0
Prupe.5G228200 Prunus persica HOM05D006376 ORTHO05D008046 1.3e-105 386.7 243 80.2
CiPaw.15G139000 Carya illinoinensis HOM05D006376 ORTHO05D008046 1.2e-90 337.0 245 69.4
CiPaw.15G138400 Carya illinoinensis HOM05D006376 ORTHO05D008046 7.5e-90 334.3 245 69.0
CANSAT21G0790 Cannabis sativa HOM05D006376 ORTHO05D008046 9.8e-90 334.0 238 73.5
GSVIVG01008377001 Vitis vinifera HOM05D006376 ORTHO05D008046 9.8e-90 334.0 238 70.6
Manes.14G168100 Manihot esculenta HOM05D006376 ORTHO05D008046 2.4e-88 329.3 263 66.2
Atru.chr9.942 Acer truncatum HOM05D006376 ORTHO05D008046 3.2e-88 328.9 218 76.1
QL10p027316 Quercus lobata HOM05D006376 ORTHO05D008046 1.6e-87 326.6 244 70.1
Ciclev10009207m.g Citrus clementina HOM05D006376 ORTHO05D008046 2.7e-87 325.9 241 69.7
Dinv13549 Davidia involucrata HOM05D006376 ORTHO05D008046 3.5e-87 325.5 245 66.1
Thecc.03G047000 Theobroma cacao HOM05D006376 ORTHO05D008046 5.0e-86 321.6 238 68.5
arahy.Tifrunner.gnm1.ann1.5Y9SE5 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-85 320.5 206 74.3
MELO3C017340.2 Cucumis melo HOM05D006376 ORTHO05D008046 1.9e-85 319.7 212 74.1
TAR629G1456 Trochodendron aralioides HOM05D006376 ORTHO05D008046 1.9e-85 319.7 242 66.5
TWI81G0521 Tripterygium wilfordii HOM05D006376 ORTHO05D008046 4.3e-85 318.5 205 75.6
Cpa.g.sc3.442 Carica papaya HOM05D006376 ORTHO05D008046 5.6e-85 318.2 243 67.1
arahy.Tifrunner.gnm1.ann1.CZ5T9B Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-84 317.0 206 73.8
Cc04_g06670 Coffea canephora HOM05D006376 ORTHO05D008046 1.6e-84 316.6 246 64.6
COL.COLO4_37647 Corchorus olitorius HOM05D006376 ORTHO05D008046 1.6e-84 316.6 242 66.5
Eucgr.B00851 Eucalyptus grandis HOM05D006376 ORTHO05D008046 1.6e-84 316.6 243 67.5
CsaV3_1G004140 Cucumis sativus L. HOM05D006376 ORTHO05D008046 3.6e-84 315.5 251 66.5
Gorai.008G288200 Gossypium raimondii HOM05D006376 ORTHO05D008046 4.7e-84 315.1 247 66.4
VMungo0251G1463 Vigna mungo HOM05D006376 ORTHO05D008046 4.7e-84 315.1 231 67.5
Phvul.002G327000 Phaseolus vulgaris HOM05D006376 ORTHO05D008046 6.2e-84 314.7 232 65.9
Gohir.D12G268200 Gossypium hirsutum HOM05D006376 ORTHO05D008046 8.0e-84 314.3 247 66.0
Lalb_Chr09g0330601 Lupinus albus HOM05D006376 ORTHO05D008046 8.0e-84 314.3 225 68.0
Glyma.05G243300 Glycine max HOM05D006376 ORTHO05D008046 1.4e-83 313.5 235 66.8
Glyma.08G051100 Glycine max HOM05D006376 ORTHO05D008046 2.3e-83 312.8 242 65.7
PGR083G0770 Punica granatum HOM05D006376 ORTHO05D008046 4.0e-83 312.0 202 75.2
Oeu024338.1 Olea europaea HOM05D006376 ORTHO05D008046 1.2e-82 310.5 248 65.7
Potri.012G052300 Populus trichocarpa HOM05D006376 ORTHO05D008046 1.2e-82 310.5 261 65.1
Lj4g0006852 Lotus japonicus HOM05D006376 ORTHO05D008046 1.5e-82 310.1 232 67.2
TPR.G12760 Trifolium pratense HOM05D006376 ORTHO05D008046 2.6e-82 309.3 203 71.9
Psat7g004120 Pisum sativum HOM05D006376 ORTHO05D008046 4.4e-82 308.5 201 73.1
RhsimUnG0086600 Rhododendron simsii HOM05D006376 ORTHO05D008046 9.8e-82 307.4 248 63.3
Hund02337 Selenicereus undatus HOM05D006376 ORTHO05D008046 9.8e-82 307.4 253 63.2
Lj9A422G67 Lonicera japonica HOM05D006376 ORTHO05D008046 2.9e-81 305.8 231 67.5
Rhsim07G0069700 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.4e-81 304.7 248 63.3
AUR62033755 Chenopodium quinoa HOM05D006376 ORTHO05D008046 1.9e-80 303.1 223 66.8
Duzib205G0506 Durio zibethinus HOM05D006376 ORTHO05D008046 1.9e-80 303.1 242 64.5
Haze_18787 Corylus avellana HOM05D006376 ORTHO05D008046 2.4e-80 302.8 181 79.0
Medtr8g106690 Medicago truncatula HOM05D006376 ORTHO05D008046 2.4e-80 302.8 219 68.0
Sabra12G0035600 Salix brachista HOM05D006376 ORTHO05D008046 2.4e-80 302.8 223 70.4
Nn3g18015 Nelumbo nucifera HOM05D006376 ORTHO05D008046 7.0e-80 301.2 241 63.5
Actinidia02655 Actinidia chinensis HOM05D006376 ORTHO05D008046 1.2e-79 300.4 247 63.2
Carub.0001s1773 Capsella rubella HOM05D006376 ORTHO05D008046 2.0e-79 299.7 201 74.6
Rhsim07G0070500 Rhododendron simsii HOM05D006376 ORTHO05D008046 6.0e-79 298.1 250 62.4
THA.LOC104813912 Tarenaya hassleriana HOM05D006376 ORTHO05D008046 1.7e-78 296.6 203 73.9
AL1G30420 Arabidopsis lyrata HOM05D006376 ORTHO05D008046 3.0e-78 295.8 202 72.3
Cfa019704 Carpinus fangiana HOM05D006376 ORTHO05D008046 3.0e-78 295.8 188 75.5
A08p30580 Brassica napus HOM05D006376 ORTHO05D008046 8.6e-78 294.3 223 66.4
Nitab4.5_0012340g0010 Nicotiana tabacum HOM05D006376 ORTHO05D008046 8.6e-78 294.3 237 65.4
Aqoxy3G03987 Aquilegia oxysepala HOM05D006376 ORTHO05D008046 1.5e-77 293.5 252 60.7
DCAR_014774 Daucus carota HOM05D006376 ORTHO05D008046 1.9e-77 293.1 209 68.9
Hma1.2p1_0660F.1_g197700 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.9e-77 293.1 204 68.6
Lsat_1_v5_gn_8_3561 Lactuca sativa HOM05D006376 ORTHO05D008046 1.9e-77 293.1 240 62.5
AUR62029950 Chenopodium quinoa HOM05D006376 ORTHO05D008046 3.3e-77 292.4 223 63.7
C08p18330 Brassica napus HOM05D006376 ORTHO05D008046 5.6e-77 291.6 186 75.8
BolC8t49467H Brassica oleracea HOM05D006376 ORTHO05D008046 5.6e-77 291.6 186 75.8
AT1G18060 Arabidopsis thaliana HOM05D006376 ORTHO05D008046 7.3e-77 291.2 203 71.9
MSTRG.4559 Avicennia marina HOM05D006376 ORTHO05D008046 1.2e-76 290.4 208 69.7
EL10Ac5g11519 Beta vulgaris HOM05D006376 ORTHO05D008046 1.6e-76 290.0 236 63.1
Thhalv10008687m.g Eutrema salsugineum HOM05D006376 ORTHO05D008046 1.6e-76 290.0 200 71.5
BraA08t34989Z Brassica rapa HOM05D000280 ORTHO05D004091 2.1e-76 289.7 178 78.1
CARHR018640 Cardamine hirsuta HOM05D006376 ORTHO05D008046 4.7e-76 288.5 203 70.0
Sc04g0003270 Simmondsia chinensis HOM05D006376 ORTHO05D008046 8.1e-76 287.7 176 76.7
SGA_v2.0_scaffold171G38935 Striga asiatica HOM05D006376 ORTHO05D008046 3.1e-75 285.8 202 70.3
Nitab4.5_0001194g0140 Nicotiana tabacum HOM05D006376 ORTHO05D008046 6.8e-75 284.6 210 68.1
vmacro17793 Vaccinium macrocarpon HOM05D006376 ORTHO05D008046 8.9e-75 284.3 254 58.7
Peaxi162Scf00332g00023 Petunia axillaris HOM05D006376 ORTHO05D008046 1.5e-74 283.5 231 64.1
PSO675G4918 Papaver somniferum HOM05D006376 ORTHO05D008046 3.4e-74 282.3 195 69.2
CAN.G423.18 Capsicum annuum HOM05D006376 ORTHO05D008046 5.8e-74 281.6 248 61.7
PGSC0003DMG400028793 Solanum tuberosum HOM05D006376 ORTHO05D008046 7.5e-74 281.2 250 61.2
Lj3g0018404 Lotus japonicus HOM05D006376 ORTHO05D008046 9.8e-74 280.8 173 77.5
ECA233G1742 Erigeron canadensis HOM05D006376 ORTHO05D008046 1.7e-73 280.0 183 71.6
Solyc06g069030.3 Solanum lycopersicum HOM05D006376 ORTHO05D008046 1.7e-73 280.0 231 64.1
MBI16_g21168_MAGBIO Magnolia biondii HOM05D006376 ORTHO05D008046 3.7e-73 278.9 237 61.6
PSO717G0073 Papaver somniferum HOM05D006376 ORTHO05D008046 3.7e-73 278.9 195 68.7
HanXRQChr05g0144491 Helianthus annuus HOM05D006376 ORTHO05D008046 8.3e-73 277.7 208 65.4
Aa31LG6G2990 Aethionema arabicum HOM05D006376 ORTHO05D008046 1.1e-72 277.3 206 67.0
Ca_17222_v3 Cicer arietinum L. HOM05D006376 ORTHO05D008046 1.1e-72 277.3 162 76.5
CDE03G0312 Ceratophyllum demersum HOM05D006376 ORTHO05D008046 1.6e-71 273.5 211 63.5
Sopen06g026320 Solanum pennellii HOM05D006376 ORTHO05D008046 2.7e-71 272.7 231 62.8
BcaC07g38909 Brassica carinata HOM05D006376 ORTHO05D008046 1.3e-70 270.4 162 78.4
Duzib084G1315 Durio zibethinus HOM05D006376 ORTHO05D008046 3.0e-70 269.2 214 61.7
Zm00001eb334810 Zea mays HOM05D006376 ORTHO05D008046 3.0e-70 269.2 238 59.2
ATR0691G291 Amborella trichopoda HOM05D006376 ORTHO05D008046 3.9e-70 268.9 207 65.7
Os01g0120500 Oryza sativa ssp. japonica HOM05D006376 ORTHO05D008046 5.6e-69 265.0 251 57.0
ClCG06G014480 Citrullus lanatus HOM05D006376 ORTHO05D008046 3.6e-68 262.3 229 59.8
Sp1g16080 Schrenkiella parvula HOM05D006376 ORTHO05D008046 6.2e-68 261.5 150 80.7
HPP92_000150 Vanilla planifolia HOM05D006376 ORTHO05D008046 2.7e-63 246.1 173 68.8
Gohir.A12G267700 Gossypium hirsutum HOM05D006376 ORTHO05D008046 6.0e-63 245.0 239 56.1
Migut.D01443 Erythranthe guttata HOM05D006376 ORTHO05D008046 3.3e-61 239.2 174 68.4
SEGI_27865 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 8.1e-60 234.6 197 58.4
Pp3c8_21790 Physcomitrium patens HOM05D006376 ORTHO05D008046 3.1e-59 232.6 192 59.4
MD06G1223100 Malus domestica HOM05D006376 ORTHO05D008046 6.9e-59 231.5 123 87.0
AagrBONN_evm.TU.Sc2ySwM_340.32 Anthoceros agrestis HOM05D006376 ORTHO05D008046 7.1e-56 221.5 204 53.9
unitig_21.g20431 Utricularia gibba HOM05D006376 ORTHO05D008046 2.7e-55 219.5 198 57.6
SMO116G0316 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.8e-50 201.8 185 52.4
Mapoly0001s0324 Marchantia polymorpha HOM05D006376 ORTHO05D008046 2.4e-48 196.4 180 52.2
MD14G1232300 Malus domestica HOM05D006376 ORTHO05D008046 1.0e-46 191.0 146 68.5
SMO164G0083 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 5.1e-46 188.7 177 53.1
SEGI_30520 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 5.8e-34 148.7 93 69.9
Thecc.03G047400 Theobroma cacao HOM05D006376 ORTHO05D008046 2.5e-32 143.3 142 57.7
Rhsim07G0070600 Rhododendron simsii HOM05D006376 ORTHO05D008046 1.7e-25 120.6 147 51.0
Hma1.2p1_0660F.1_g197690 Hydrangea macrophylla HOM05D006376 ORTHO05D008046 1.4e-24 117.5 130 50.8
PRCOL_00002665 Prasinoderma coloniale HOM05D006376 ORTHO05D008046 4.3e-21 105.9 194 36.1
Cre09.g401350 Chlamydomonas reinhardtii HOM05D006376 ORTHO05D008046 1.7e-20 104.0 176 36.4
arahy.Tifrunner.gnm1.ann1.VLX8JM Arachis hypogaea HOM05D006376 ORTHO05D008046 5.3e-19 99.0 117 53.8
arahy.Tifrunner.gnm1.ann1.8TB400 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-18 97.8 82 64.6
arahy.Tifrunner.gnm1.ann1.Y3IZ58 Arachis hypogaea HOM05D006376 ORTHO05D008046 1.2e-18 97.8 82 64.6
arahy.Tifrunner.gnm1.ann1.W819WZ Arachis hypogaea HOM05D006376 ORTHO05D008046 7.7e-18 95.1 82 63.4
arahy.Tifrunner.gnm1.ann1.FQ3MGU Arachis hypogaea HOM05D006376 ORTHO05D008046 1.0e-17 94.7 82 63.4
SEGI_17791 Sequoiadendron giganteum HOM05D006376 ORTHO05D008046 4.7e-15 85.9 60 61.7
arahy.Tifrunner.gnm1.ann1.XS5A0Y Arachis hypogaea HOM05D006376 ORTHO05D008046 1.1e-11 74.7 72 61.1
SMO137G0132 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 1.0e-09 68.2 73 54.8
SMO170G0025 Selaginella moellendorffii HOM05D006376 ORTHO05D008046 2.2e-09 67.0 73 53.4
Dinv17636 Davidia involucrata HOM05D012663 ORTHO05D004533 1.4e-08 64.3 87 44.8
arahy.Tifrunner.gnm1.ann1.QNQ2AZ Arachis hypogaea HOM05D006376 ORTHO05D008046 1.9e-08 63.9 68 55.9
arahy.Tifrunner.gnm1.ann1.PN4BM4 Arachis hypogaea HOM05D001163 ORTHO05D001769 6.1e-07 58.9 68 52.9


User provided reference genes

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