Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0179011 Rosa chinensis HOM05D000149 ORTHO05D000076 4.7e-48 194.1 93 100.0
RcHm_v2.0_Chr7g0178301 Rosa chinensis HOM05D000149 ORTHO05D000076 1.0e-18 96.7 59 79.7
RcHm_v2.0_Chr7g0178281 Rosa chinensis HOM05D000149 ORTHO05D000076 1.1e-17 93.2 59 76.3
Prupe.5G228700 Prunus persica HOM05D000149 ORTHO05D000076 9.6e-17 90.1 59 78.0
FAN18G0880 Fragaria x ananassa HOM05D000149 ORTHO05D000076 1.6e-16 89.4 61 75.4
RcHm_v2.0_Chr7g0179041 Rosa chinensis HOM05D000149 ORTHO05D000076 8.1e-16 87.0 61 72.1
RcHm_v2.0_Chr7g0187641 Rosa chinensis HOM05D000149 ORTHO05D000076 4.0e-15 84.7 60 71.7
MD14G1233000 Malus domestica HOM05D000149 ORTHO05D000076 8.9e-15 83.6 60 68.3
MD14G1232900 Malus domestica HOM05D000149 ORTHO05D000076 1.2e-14 83.2 60 70.0
RcHm_v2.0_Chr3g0486051 Rosa chinensis HOM05D000149 ORTHO05D000076 1.2e-14 83.2 61 67.2
Prupe.5G228900 Prunus persica HOM05D000149 ORTHO05D000076 2.0e-14 82.4 63 73.0
RcHm_v2.0_Chr3g0486091 Rosa chinensis HOM05D000149 ORTHO05D000076 2.6e-14 82.0 61 65.6
RcHm_v2.0_Chr1g0327261 Rosa chinensis HOM05D000149 ORTHO05D000076 3.4e-14 81.6 61 73.8
RcHm_v2.0_Chr7g0179031 Rosa chinensis HOM05D000149 ORTHO05D000076 3.4e-14 81.6 58 70.7
MD14G1232700 Malus domestica HOM05D000149 ORTHO05D000076 4.4e-14 81.3 59 69.5
MD14G1232800 Malus domestica HOM05D000149 ORTHO05D000076 7.6e-14 80.5 59 67.8
MD14G1232400 Malus domestica HOM05D000149 ORTHO05D000076 1.3e-13 79.7 60 65.0
RcHm_v2.0_Chr7g0201901 Rosa chinensis HOM05D000149 ORTHO05D000076 1.3e-13 79.7 60 68.3
Prupe.5G228600 Prunus persica HOM05D000149 ORTHO05D000076 3.8e-13 78.2 61 68.9
RcHm_v2.0_Chr7g0201881 Rosa chinensis HOM05D000149 ORTHO05D000076 3.8e-13 78.2 60 66.7
MD06G1223700 Malus domestica HOM05D000149 ORTHO05D000076 4.9e-13 77.8 62 64.5
Prupe.5G229000 Prunus persica HOM05D000149 ORTHO05D000076 1.1e-12 76.6 61 67.2
RcHm_v2.0_Chr4g0400991 Rosa chinensis HOM05D000149 ORTHO05D000076 1.4e-12 76.3 61 59.0
Prupe.5G228500 Prunus persica HOM05D000149 ORTHO05D000076 2.4e-12 75.5 62 62.9
FAN08G0323 Fragaria x ananassa HOM05D000149 ORTHO05D000076 4.2e-12 74.7 61 67.2
RcHm_v2.0_Chr7g0178991 Rosa chinensis HOM05D000149 ORTHO05D000076 5.4e-12 74.3 61 67.2
FvH4_5g16970 Fragaria vesca HOM05D000149 ORTHO05D000076 1.2e-11 73.2 48 75.0
MD09G1254300 Malus domestica HOM05D000149 ORTHO05D000076 1.2e-11 73.2 60 63.3
RcHm_v2.0_Chr7g0178951 Rosa chinensis HOM05D000149 ORTHO05D000076 1.6e-11 72.8 60 61.7
RcHm_v2.0_Chr4g0400971 Rosa chinensis HOM05D000149 ORTHO05D000076 2.1e-11 72.4 61 55.7
RcHm_v2.0_Chr7g0178961 Rosa chinensis HOM05D000149 ORTHO05D000076 2.1e-11 72.4 61 59.0
FAN04G0066 Fragaria x ananassa HOM05D000149 ORTHO05D000076 3.5e-11 71.6 61 65.6
MD02G1312100 Malus domestica HOM05D000149 ORTHO05D000076 3.5e-11 71.6 62 58.1
MD06G1223600 Malus domestica HOM05D000149 ORTHO05D000076 4.6e-11 71.2 58 63.8
MD10G1005200 Malus domestica HOM05D000149 ORTHO05D000076 6.0e-11 70.9 59 55.9
Dinv19664 Davidia involucrata HOM05D000149 ORTHO05D000076 1.3e-10 69.7 62 56.5
QL10p027368 Quercus lobata HOM05D000149 ORTHO05D000076 1.3e-10 69.7 58 58.6
FAN01G1979 Fragaria x ananassa HOM05D000149 ORTHO05D000076 1.7e-10 69.3 52 65.4
MD09G1254000 Malus domestica HOM05D000149 ORTHO05D000076 1.7e-10 69.3 60 61.7
MD06G1223800 Malus domestica HOM05D000149 ORTHO05D000076 3.0e-10 68.6 51 64.7
FvH4_7g18490 Fragaria vesca HOM05D000149 ORTHO05D000076 3.9e-10 68.2 52 65.4
FAN06G0422 Fragaria x ananassa HOM05D000149 ORTHO05D000076 3.9e-10 68.2 52 65.4
RcHm_v2.0_Chr2g0137031 Rosa chinensis HOM05D000149 ORTHO05D000076 3.9e-10 68.2 67 53.7
Dinv06608 Davidia involucrata HOM05D000149 ORTHO05D000076 8.7e-10 67.0 52 57.7
Hma1.2p1_0836F.1_g225950 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 8.7e-10 67.0 48 60.4
TAR629G0671 Trochodendron aralioides HOM05D000149 ORTHO05D000076 1.1e-09 66.6 53 56.6
Dinv06610 Davidia involucrata HOM05D000149 ORTHO05D000076 1.5e-09 66.2 52 57.7
RcHm_v2.0_Chr2g0128631 Rosa chinensis HOM05D000149 ORTHO05D000076 1.5e-09 66.2 53 62.3
Dinv06282 Davidia involucrata HOM05D000149 ORTHO05D000076 1.9e-09 65.9 57 54.4
MD05G1007900 Malus domestica HOM05D000149 ORTHO05D000076 3.3e-09 65.1 59 54.2
FAN06G2908 Fragaria x ananassa HOM05D000149 ORTHO05D000076 4.3e-09 64.7 52 63.5
Dinv06130 Davidia involucrata HOM05D000149 ORTHO05D000076 5.6e-09 64.3 59 50.8
Hma1.2p1_1029F.1_g249570 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 7.3e-09 63.9 50 58.0
Hma1.2p1_3112F.1_g332766 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 7.3e-09 63.9 50 58.0
MD10G1005900 Malus domestica HOM05D000149 ORTHO05D000076 7.3e-09 63.9 59 52.5
Actinidia36349 Actinidia chinensis HOM05D000149 ORTHO05D000076 1.3e-08 63.2 59 52.5
Cpa.g.sc170.1 Carica papaya HOM05D000149 ORTHO05D000076 1.3e-08 63.2 52 55.8
Dinv10418 Davidia involucrata HOM05D000149 ORTHO05D000076 1.3e-08 63.2 61 55.7
TAR371G0466 Trochodendron aralioides HOM05D000149 ORTHO05D000076 1.3e-08 63.2 43 65.1
Prupe.1G345700 Prunus persica HOM05D000149 ORTHO05D000076 2.1e-08 62.4 57 52.6
Hma1.2p1_0500F.1_g167040 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 2.8e-08 62.0 53 54.7
CiPaw.16G090300 Carya illinoinensis HOM05D000149 ORTHO05D000076 3.6e-08 61.6 61 54.1
Nn3g18397 Nelumbo nucifera HOM05D000149 ORTHO05D000076 3.6e-08 61.6 57 49.1
PSO478G5199 Papaver somniferum HOM05D000149 ORTHO05D000076 3.6e-08 61.6 51 62.7
QL03p036644 Quercus lobata HOM05D000149 ORTHO05D000076 3.6e-08 61.6 51 52.9
QL03p037375 Quercus lobata HOM05D000149 ORTHO05D000076 3.6e-08 61.6 51 52.9
Thecc.07G047200 Theobroma cacao HOM05D000149 ORTHO05D000076 3.6e-08 61.6 47 61.7
Actinidia15911 Actinidia chinensis HOM05D000149 ORTHO05D000076 4.8e-08 61.2 59 52.5
Dinv06131 Davidia involucrata HOM05D000149 ORTHO05D000076 4.8e-08 61.2 59 49.2
MD13G1007200 Malus domestica HOM05D000149 ORTHO05D000076 4.8e-08 61.2 63 52.4
Thecc.04G125600 Theobroma cacao HOM05D000149 ORTHO05D000076 4.8e-08 61.2 56 53.6
GSVIVG01011636001 Vitis vinifera HOM05D000149 ORTHO05D000076 4.8e-08 61.2 58 50.0
Hma1.2p1_1247F.1_g270210 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 6.2e-08 60.8 45 55.6
Hma1.2p1_1474F.1_g285760 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 6.2e-08 60.8 45 55.6
MD02G1312500 Malus domestica HOM05D000149 ORTHO05D000076 6.2e-08 60.8 60 53.3
Cpa.g.sc116.3 Carica papaya HOM05D000149 ORTHO05D000076 8.1e-08 60.5 59 42.4
Dinv19750 Davidia involucrata HOM05D000149 ORTHO05D000076 8.1e-08 60.5 57 56.1
Lj1A603T12 Lonicera japonica HOM05D000149 ORTHO05D000076 8.1e-08 60.5 50 58.0
Prupe.5G228400 Prunus persica HOM05D000149 ORTHO05D000076 1.4e-07 59.7 50 62.0
Prupe.5G229100 Prunus persica HOM05D000149 ORTHO05D000076 1.4e-07 59.7 49 61.2
Thecc.04G125400 Theobroma cacao HOM05D000149 ORTHO05D000076 1.4e-07 59.7 53 52.8
Manes.06G009000 Manihot esculenta HOM05D000149 ORTHO05D000076 1.8e-07 59.3 52 55.8
Nn3g18399 Nelumbo nucifera HOM05D000149 ORTHO05D000076 1.8e-07 59.3 50 52.0
Dinv18915 Davidia involucrata HOM05D000149 ORTHO05D000076 2.4e-07 58.9 59 45.8
TAR371G0562 Trochodendron aralioides HOM05D000149 ORTHO05D000076 2.4e-07 58.9 53 50.9
Duzib133G1266 Durio zibethinus HOM05D000149 ORTHO05D000076 3.1e-07 58.5 56 50.0
Sc04g0003220 Simmondsia chinensis HOM05D000149 ORTHO05D000076 3.1e-07 58.5 61 50.8
TAR371G0648 Trochodendron aralioides HOM05D000149 ORTHO05D000076 3.1e-07 58.5 53 52.8
GSVIVG01011639001 Vitis vinifera HOM05D000149 ORTHO05D000076 3.1e-07 58.5 56 44.6
Cpa.g.sc170.2 Carica papaya HOM05D000149 ORTHO05D000076 4.0e-07 58.2 42 57.1
Dinv19753 Davidia involucrata HOM05D000149 ORTHO05D000076 4.0e-07 58.2 61 54.1
Hma1.2p1_0283F.1_g113730 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 4.0e-07 58.2 46 58.7
MD15G1255300 Malus domestica HOM05D000149 ORTHO05D000076 4.0e-07 58.2 44 61.4
QL03p037026 Quercus lobata HOM05D000149 ORTHO05D000076 4.0e-07 58.2 51 49.0
Dinv06129 Davidia involucrata HOM05D000149 ORTHO05D000076 5.3e-07 57.8 59 47.5
Thecc.10G169800 Theobroma cacao HOM05D000149 ORTHO05D000076 5.3e-07 57.8 53 52.8
CANSAT78G0595 Cannabis sativa HOM05D000149 ORTHO05D000076 6.9e-07 57.4 45 62.2
CiPaw.16G090400 Carya illinoinensis HOM05D000149 ORTHO05D000076 6.9e-07 57.4 62 54.8
MD06G1227300 Malus domestica HOM05D000149 ORTHO05D000076 6.9e-07 57.4 49 55.1
Manes.17G085100 Manihot esculenta HOM05D000149 ORTHO05D000076 6.9e-07 57.4 51 54.9
Nn3g18396 Nelumbo nucifera HOM05D000149 ORTHO05D000076 6.9e-07 57.4 60 45.0
GSVIVG01011642001 Vitis vinifera HOM05D000149 ORTHO05D000076 6.9e-07 57.4 60 43.3
Rhsim04G0170500 Rhododendron simsii HOM05D000149 ORTHO05D000076 9.0e-07 57.0 49 55.1
Thecc.10G169600 Theobroma cacao HOM05D000149 ORTHO05D000076 9.0e-07 57.0 53 52.8
GSVIVG01011638001 Vitis vinifera HOM05D000149 ORTHO05D000076 9.0e-07 57.0 50 48.0
Dinv14857 Davidia involucrata HOM05D000149 ORTHO05D000076 1.2e-06 56.6 53 49.1
SGA_v2.0_scaffold62G21560 Striga asiatica HOM05D000149 ORTHO05D000076 1.2e-06 56.6 54 50.0
GSVIVG01008380001 Vitis vinifera HOM05D000149 ORTHO05D000076 1.2e-06 56.6 62 50.0
Cfa008564 Carpinus fangiana HOM05D000149 ORTHO05D000076 1.5e-06 56.2 51 52.9
Lj3A863T43 Lonicera japonica HOM05D000149 ORTHO05D000076 1.5e-06 56.2 54 48.1
Thecc.04G125300 Theobroma cacao HOM05D000149 ORTHO05D000076 1.5e-06 56.2 52 53.8
Thecc.10G170000 Theobroma cacao HOM05D000149 ORTHO05D000076 1.5e-06 56.2 53 49.1
FvH4_4g36770 Fragaria vesca HOM05D000149 ORTHO05D000076 2.0e-06 55.8 51 52.9
PSO782G2439 Papaver somniferum HOM05D000149 ORTHO05D000076 2.0e-06 55.8 52 55.8
TAR629G1630 Trochodendron aralioides HOM05D000149 ORTHO05D000076 2.0e-06 55.8 60 50.0
Cfa015041 Carpinus fangiana HOM05D000149 ORTHO05D000076 2.6e-06 55.5 49 51.0
Cc07_g18730 Coffea canephora HOM05D000149 ORTHO05D000076 2.6e-06 55.5 49 49.0
Haze_11051 Corylus avellana HOM05D000149 ORTHO05D000076 2.6e-06 55.5 44 54.5
Haze_07384 Corylus avellana HOM05D000149 ORTHO05D000076 3.4e-06 55.1 42 59.5
Hma1.2p1_1257F.1_g270800 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 3.4e-06 55.1 54 55.6
Potri.017G121800 Populus trichocarpa HOM05D000149 ORTHO05D000076 3.4e-06 55.1 53 45.3
Haze_14201 Corylus avellana HOM05D000526 ORTHO05D000956 4.4e-06 54.7 48 60.4
Migut.E00399 Erythranthe guttata HOM05D000149 ORTHO05D000076 4.4e-06 54.7 38 63.2
Migut.H02148 Erythranthe guttata HOM05D000149 ORTHO05D000076 4.4e-06 54.7 45 55.6
Eucgr.K02249 Eucalyptus grandis HOM05D000149 ORTHO05D000076 4.4e-06 54.7 47 51.1
Hma1.2p1_0500F.1_g167070 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 4.4e-06 54.7 50 54.0
Hma1.2p1_0726F.1_g209060 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 4.4e-06 54.7 52 51.9
MBI16_g21173_MAGBIO Magnolia biondii HOM05D000149 ORTHO05D000076 4.4e-06 54.7 47 55.3
Potri.017G122000 Populus trichocarpa HOM05D000149 ORTHO05D000076 4.4e-06 54.7 53 45.3
GSVIVG01011637001 Vitis vinifera HOM05D000149 ORTHO05D000076 4.4e-06 54.7 46 52.2
AL7G52990 Arabidopsis lyrata HOM05D000149 ORTHO05D000076 5.8e-06 54.3 49 46.9
BcaC05g25440 Brassica carinata HOM05D000149 ORTHO05D000076 5.8e-06 54.3 46 52.2
C05p13250 Brassica napus HOM05D000149 ORTHO05D000076 5.8e-06 54.3 46 52.2
Duzib133G1465 Durio zibethinus HOM05D000149 ORTHO05D000076 5.8e-06 54.3 53 49.1
Eucgr.G02088 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.8e-06 54.3 47 55.3
Eucgr.K02257 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.8e-06 54.3 47 51.1
Eucgr.L01415 Eucalyptus grandis HOM05D000149 ORTHO05D000076 5.8e-06 54.3 47 51.1
Hma1.2p1_0017F.1_g011450 Hydrangea macrophylla HOM05D000149 ORTHO05D000047 5.8e-06 54.3 52 51.9
Potri.017G122950 Populus trichocarpa HOM05D000149 ORTHO05D000076 5.8e-06 54.3 53 47.2
TAR629G2533 Trochodendron aralioides HOM05D000149 ORTHO05D000076 5.8e-06 54.3 52 51.9
AT5G37970 Arabidopsis thaliana HOM05D000149 ORTHO05D000076 7.6e-06 53.9 49 46.9
A06p11130 Brassica napus HOM05D000149 ORTHO05D000076 7.6e-06 53.9 46 52.2
BolC5t30062H Brassica oleracea HOM05D000149 ORTHO05D000076 7.6e-06 53.9 46 52.2
CSS0017721 Camellia sinensis var. sinensis HOM05D000149 ORTHO05D000076 7.6e-06 53.9 47 48.9
Cfa007875 Carpinus fangiana HOM05D000149 ORTHO05D000076 7.6e-06 53.9 38 65.8
Cc07_g18740 Coffea canephora HOM05D000149 ORTHO05D000076 7.6e-06 53.9 49 46.9
COL.COLO4_27153 Corchorus olitorius HOM05D000149 ORTHO05D000076 7.6e-06 53.9 45 55.6
Haze_10859 Corylus avellana HOM05D000149 ORTHO05D000076 7.6e-06 53.9 49 49.0
Hma1.2p1_2154F.1_g315300 Hydrangea macrophylla HOM05D000149 ORTHO05D000076 7.6e-06 53.9 54 53.7
Sp5g23050 Schrenkiella parvula HOM05D000149 ORTHO05D000076 7.6e-06 53.9 54 51.9
Sc04g0003240 Simmondsia chinensis HOM05D000149 ORTHO05D000076 7.6e-06 53.9 56 46.4
GSVIVG01011641001 Vitis vinifera HOM05D000149 ORTHO05D000076 7.6e-06 53.9 46 50.0
Actinidia15240 Actinidia chinensis HOM05D000149 ORTHO05D000076 9.9e-06 53.5 52 50.0
Actinidia36691 Actinidia chinensis HOM05D000149 ORTHO05D000076 9.9e-06 53.5 52 50.0
Dinv16181 Davidia involucrata HOM05D000149 ORTHO05D000076 9.9e-06 53.5 42 54.8
Eucgr.K02253 Eucalyptus grandis HOM05D000149 ORTHO05D000076 9.9e-06 53.5 58 46.6
PSO478G2300 Papaver somniferum HOM05D000149 ORTHO05D000076 9.9e-06 53.5 55 54.5
Prupe.8G068600 Prunus persica HOM05D000149 ORTHO05D000076 9.9e-06 53.5 49 55.1
QL03p037387 Quercus lobata HOM05D000149 ORTHO05D000076 9.9e-06 53.5 51 47.1
RcHm_v2.0_Chr4g0446481 Rosa chinensis HOM05D000149 ORTHO05D000076 9.9e-06 53.5 51 51.0
Thecc.02G309300 Theobroma cacao HOM05D000149 ORTHO05D000076 9.9e-06 53.5 49 49.0


User provided reference genes

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