Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 4.7e-200 701.0 366 100.0
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 4.2e-185 651.4 366 92.3
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.2e-185 651.4 366 92.3
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.4e-182 641.7 363 91.7
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.6e-176 622.9 359 90.0
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.0e-158 562.8 368 79.3
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 5.8e-158 561.2 369 78.9
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 1.3e-154 550.1 369 76.7
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 6.6e-130 468.0 374 65.0
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 1.1e-129 467.2 373 64.9
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 2.1e-128 463.0 376 65.2
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.4e-127 459.5 364 65.9
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 3.4e-126 455.7 364 64.8
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 4.4e-126 455.3 369 64.8
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.3e-125 453.8 371 63.1
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.7e-125 453.4 371 63.6
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.9e-125 452.6 374 64.2
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.1e-124 450.7 371 66.3
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.9e-124 449.9 374 63.6
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 9.3e-124 447.6 374 63.1
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.6e-123 446.8 367 63.8
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 1.6e-123 446.8 368 62.0
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 2.7e-123 446.0 373 61.9
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.7e-123 446.0 374 62.8
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.3e-122 443.0 363 63.9
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.9e-122 442.2 363 63.6
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 5.1e-122 441.8 374 62.8
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.5e-121 439.5 373 61.7
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 2.5e-121 439.5 364 64.8
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.5e-121 439.5 380 61.8
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.3e-121 439.1 371 61.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.3e-121 439.1 373 62.7
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 5.8e-118 428.3 370 60.8
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 5.8e-118 428.3 370 60.8
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 3.8e-117 425.6 369 60.4
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 7.1e-116 421.4 370 61.9
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.9e-113 413.3 373 57.4
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 3.3e-113 412.5 370 60.3
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 9.6e-113 411.0 368 59.0
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 4.8e-112 408.7 373 57.1
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 8.1e-112 407.9 370 58.9
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 1.4e-111 407.1 365 58.1
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 1.8e-111 406.8 371 59.6
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 2.4e-111 406.4 361 60.1
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 4.0e-111 405.6 370 59.2
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 9.0e-111 404.4 370 58.4
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 9.0e-111 404.4 362 58.6
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 9.0e-111 404.4 370 58.6
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 2.0e-110 403.3 368 57.6
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 2.6e-110 402.9 368 57.6
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 3.4e-110 402.5 365 58.6
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.8e-110 401.7 373 58.7
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 7.6e-110 401.4 368 57.9
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.0e-109 401.0 368 59.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.7e-109 400.2 365 58.6
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 2.2e-109 399.8 376 56.4
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.9e-109 399.4 369 59.1
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 3.8e-109 399.1 370 57.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.1e-108 397.5 367 57.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 1.4e-108 397.1 370 57.0
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-108 397.1 362 57.5
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.5e-108 396.4 370 56.2
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.5e-108 396.4 368 59.5
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 3.2e-108 396.0 364 58.5
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.2e-107 394.0 383 55.4
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.8e-106 390.2 365 57.3
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.8e-106 390.2 371 54.7
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 3.9e-106 389.0 367 58.3
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 5.1e-106 388.7 487 46.6
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 6.7e-106 388.3 363 56.2
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.5e-105 387.1 363 56.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 1.5e-105 387.1 331 61.9
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.5e-105 386.3 367 56.9
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 7.4e-105 384.8 364 56.3
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 4.8e-104 382.1 377 53.8
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 2.4e-103 379.8 408 52.5
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.0e-103 377.9 366 55.7
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 9.0e-103 377.9 365 54.5
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 1.2e-102 377.5 368 55.4
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 1.2e-102 377.5 404 51.5
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 2.6e-102 376.3 365 55.9
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 3.4e-102 375.9 371 55.5
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 4.5e-102 375.6 372 53.5
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-102 375.6 509 44.0
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 7.6e-102 374.8 336 59.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.0e-101 374.4 363 55.4
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.3e-101 374.0 313 63.3
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.7e-101 373.6 383 53.5
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 3.8e-101 372.5 365 55.3
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 5.0e-101 372.1 366 55.7
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 5.0e-101 372.1 367 55.9
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 6.5e-101 371.7 367 54.5
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 8.5e-101 371.3 309 61.8
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.5e-101 371.3 380 55.0
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 8.5e-101 371.3 368 54.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.5e-100 369.8 358 56.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 7.2e-100 368.2 389 52.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.2e-99 367.5 365 54.8
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.6e-99 365.5 205 91.7
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.3e-98 364.0 366 54.4
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.9e-98 362.5 366 54.1
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.9e-98 362.5 377 53.1
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 6.7e-98 361.7 361 54.0
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 6.7e-98 361.7 316 61.7
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 2.5e-97 359.8 353 55.2
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 2.5e-97 359.8 366 53.3
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 9.7e-97 357.8 370 52.7
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 6.3e-96 355.1 403 49.9
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 2.4e-95 353.2 372 51.9
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 4.1e-95 352.4 399 50.4
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 6.9e-95 351.7 365 52.3
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 1.2e-94 350.9 355 53.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 2.0e-94 350.1 376 51.9
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 5.9e-94 348.6 564 41.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 5.9e-94 348.6 362 52.5
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 1.0e-93 347.8 351 53.3
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 1.0e-93 347.8 352 53.4
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.6e-91 339.3 373 50.1
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 6.1e-91 338.6 295 58.3
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 7.9e-91 338.2 287 57.5
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-89 334.3 310 58.1
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 2.2e-88 330.1 379 49.1
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.7e-88 329.3 373 48.8
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 4.8e-88 328.9 367 50.1
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 6.3e-88 328.6 351 51.0
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.1e-87 327.8 374 51.1
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 1.2e-86 324.3 310 57.4
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 2.2e-85 320.1 369 50.1
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 3.2e-84 316.2 307 55.7
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 9.4e-76 288.1 472 40.0
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 8.0e-75 285.0 297 51.9
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-70 270.4 209 67.9
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 2.9e-69 266.5 209 64.1
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 1.9e-68 263.8 206 63.6
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 1.4e-66 257.7 306 48.4
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 9.8e-65 251.5 228 58.3
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.7e-64 250.8 208 62.0
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-61 240.4 218 57.3
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.0e-61 239.2 307 45.3
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-60 237.7 218 56.9
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 4.2e-60 236.1 314 41.4
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.0e-57 227.3 378 36.2
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 4.4e-57 226.1 336 40.8
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.2e-56 223.8 160 73.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 7.0e-55 218.8 179 65.9
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.2e-54 218.0 179 65.4
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.0e-53 214.9 160 70.0
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-53 214.5 179 64.8
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.9e-53 213.4 166 66.9
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.6e-52 209.1 173 64.7
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 6.1e-51 205.7 281 46.6
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-50 204.5 176 62.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 6.4e-48 195.7 377 35.0
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 1.1e-47 194.9 376 33.0
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.8e-47 194.1 179 60.9
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 2.4e-47 193.7 155 63.2
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.1e-47 193.0 375 36.8
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 5.9e-46 189.1 369 33.3
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 7.8e-46 188.7 377 33.7
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 1.0e-45 188.3 204 48.5
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.3e-40 171.4 366 33.3
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.7e-40 171.0 257 42.0
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 3.5e-38 163.3 162 56.8
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-37 161.4 151 59.6
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.7e-35 152.9 161 49.7
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-34 151.4 106 74.5
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 3.1e-34 150.2 161 49.1
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.5e-33 147.9 131 61.8
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 3.7e-32 143.3 124 60.5
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 2.5e-28 130.6 173 42.8
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 4.3e-28 129.8 135 48.1
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.2e-27 128.3 138 48.6
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 4.0e-26 123.2 133 52.6
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 5.8e-25 119.4 139 49.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.7e-21 107.8 253 29.6
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 2.4e-18 97.4 304 27.3


User provided reference genes

Program Settings