Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178211 Rosa chinensis HOM05D007021 ORTHO05D008916 3.0e-114 415.2 215 100.0
FAN04G2374 Fragaria x ananassa HOM05D007021 ORTHO05D008916 9.7e-97 357.1 216 88.9
FvH4_5g17480 Fragaria vesca HOM05D007021 ORTHO05D008916 3.7e-96 355.1 216 88.9
FAN18G1853 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.7e-96 355.1 216 88.9
FAN08G1321 Fragaria x ananassa HOM05D007021 ORTHO05D008916 3.1e-95 352.1 216 88.4
Prupe.5G234700 Prunus persica HOM05D007021 ORTHO05D008916 1.4e-82 310.1 215 77.2
QL10p030610 Quercus lobata HOM05D007021 ORTHO05D008916 2.9e-77 292.4 216 73.6
CiPaw.16G096000 Carya illinoinensis HOM05D007021 ORTHO05D008916 4.8e-72 275.0 217 69.6
GSVIVG01008459001 Vitis vinifera HOM05D007021 ORTHO05D008916 4.5e-70 268.5 217 71.4
MD06G1228200 Malus domestica HOM05D007021 ORTHO05D008916 1.0e-69 267.3 180 77.2
Dinv18013 Davidia involucrata HOM05D007021 ORTHO05D008916 1.2e-67 260.4 207 68.1
Atru.chr9.1670 Acer truncatum HOM05D007021 ORTHO05D008916 1.1e-63 247.3 207 67.6
CSS0017706 Camellia sinensis var. sinensis HOM05D007021 ORTHO05D008916 7.0e-63 244.6 217 64.1
Cfa019639 Carpinus fangiana HOM05D007021 ORTHO05D008916 1.0e-61 240.7 183 72.7
Potri.015G036500 Populus trichocarpa HOM05D007021 ORTHO05D008916 5.0e-61 238.4 217 65.4
Hma1.2p1_0163F.1_g073000 Hydrangea macrophylla HOM05D007021 ORTHO05D008916 1.5e-60 236.9 207 64.7
Cpa.g.sc3.381 Carica papaya HOM05D007021 ORTHO05D008916 2.5e-60 236.1 247 58.3
Sabra15G0029900 Salix brachista HOM05D007021 ORTHO05D008916 1.2e-59 233.8 217 64.1
FAN13G1201 Fragaria x ananassa HOM05D007021 ORTHO05D008916 2.1e-59 233.0 141 92.2
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 4.7e-59 231.9 206 64.6
TWI81G0868 Tripterygium wilfordii HOM05D007021 ORTHO05D008916 1.2e-57 227.3 222 63.1
Gorai.006G191500 Gossypium raimondii HOM05D007021 ORTHO05D008916 2.2e-56 223.0 199 65.8
CANSAT80G0297 Cannabis sativa HOM05D007021 ORTHO05D008916 3.7e-56 222.2 205 64.9
Thecc.03G058600 Theobroma cacao HOM05D007021 ORTHO05D008916 8.3e-56 221.1 199 66.3
CANSAT80G1746 Cannabis sativa HOM05D007021 ORTHO05D008916 1.1e-55 220.7 205 64.4
Glyma.05G246900 Glycine max HOM05D007021 ORTHO05D008916 3.2e-55 219.2 209 61.7
Lalb_Chr05g0221591 Lupinus albus HOM05D007021 ORTHO05D008916 2.0e-54 216.5 207 62.3
ClCG06G014200 Citrullus lanatus HOM05D007021 ORTHO05D008916 4.6e-54 215.3 222 56.3
Glyma.08G055300 Glycine max HOM05D007021 ORTHO05D008916 5.9e-54 214.9 208 60.1
Ciclev10009503m.g Citrus clementina HOM05D007021 ORTHO05D008916 1.0e-53 214.2 207 61.4
Sed0001257 Sechium edule HOM05D007021 ORTHO05D008916 1.7e-53 213.4 217 56.7
Gohir.A09G174900 Gossypium hirsutum HOM05D007021 ORTHO05D008916 2.3e-53 213.0 199 64.3
Manes.06G004800 Manihot esculenta HOM05D007021 ORTHO05D008916 3.0e-53 212.6 217 58.1
HanXRQChr15g0486591 Helianthus annuus HOM05D007021 ORTHO05D008916 3.9e-53 212.2 184 66.3
TAR623G0728 Trochodendron aralioides HOM05D007021 ORTHO05D008916 1.1e-52 210.7 191 63.9
Lsat_1_v5_gn_8_115881 Lactuca sativa HOM05D007021 ORTHO05D008916 1.9e-52 209.9 186 64.5
VMungo0251G3404 Vigna mungo HOM05D007021 ORTHO05D008916 2.1e-51 206.5 208 58.2
MELO3C017374.2 Cucumis melo HOM05D007021 ORTHO05D008916 2.8e-51 206.1 217 54.4
MSTRG.11303 Avicennia marina HOM05D007021 ORTHO05D008916 4.7e-51 205.3 219 55.7
CsaV3_1G004470 Cucumis sativus L. HOM05D007021 ORTHO05D008916 3.1e-50 202.6 208 55.8
Aqoxy1G00082 Aquilegia oxysepala HOM05D007021 ORTHO05D008916 5.2e-50 201.8 146 78.8
Phvul.002G331000 Phaseolus vulgaris HOM05D007021 ORTHO05D008916 5.2e-50 201.8 208 53.4
Eucgr.K02276 Eucalyptus grandis HOM05D007021 ORTHO05D008916 6.8e-50 201.4 206 59.7
Gohir.D09G170185 Gossypium hirsutum HOM05D007021 ORTHO05D008916 1.2e-49 200.7 166 70.5
PGR044G2095 Punica granatum HOM05D007021 ORTHO05D008916 3.4e-49 199.1 217 57.1
Migut.I00268 Erythranthe guttata HOM05D007021 ORTHO05D008916 9.8e-49 197.6 210 56.2
COL.COLO4_28897 Corchorus olitorius HOM05D007021 ORTHO05D008916 3.7e-48 195.7 166 69.3
Nn7g37125 Nelumbo nucifera HOM05D007021 ORTHO05D008916 3.7e-48 195.7 160 70.0
Solyc05g006440.4 Solanum lycopersicum HOM05D007021 ORTHO05D008916 6.4e-48 194.9 207 62.8
PGSC0003DMG400022612 Solanum tuberosum HOM05D007021 ORTHO05D008916 8.3e-48 194.5 220 58.2
Gorai.003G035100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.9e-47 193.4 166 68.7
Lj9A418T22 Lonicera japonica HOM05D007021 ORTHO05D008916 1.9e-47 193.4 181 62.4
CAN.G159.4 Capsicum annuum HOM05D007021 ORTHO05D008916 4.1e-47 192.2 238 52.9
Sopen05g002370 Solanum pennellii HOM05D007021 ORTHO05D008916 5.4e-47 191.8 206 60.7
Thhalv10021570m.g Eutrema salsugineum HOM05D007021 ORTHO05D008916 7.0e-47 191.4 209 56.5
Gohir.D03G033500 Gossypium hirsutum HOM05D007021 ORTHO05D008916 7.0e-47 191.4 166 67.5
PSO339G6055 Papaver somniferum HOM05D007021 ORTHO05D008916 7.0e-47 191.4 130 79.2
Gohir.D08G085600 Gossypium hirsutum HOM05D007021 ORTHO05D008916 3.5e-46 189.1 166 66.9
Rhsim12G0138000 Rhododendron simsii HOM05D007021 ORTHO05D008916 7.8e-46 188.0 195 59.0
Sp3g16050 Schrenkiella parvula HOM05D007021 ORTHO05D008916 1.3e-45 187.2 212 53.8
BcaB06g25855 Brassica carinata HOM05D007021 ORTHO05D008916 1.9e-44 183.3 124 75.8
Nitab4.5_0002312g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.5e-44 183.0 146 71.2
Nitab4.5_0004119g0020 Nicotiana tabacum HOM05D007021 ORTHO05D008916 2.5e-44 183.0 146 71.2
Sc04g0004860 Simmondsia chinensis HOM05D007021 ORTHO05D008916 2.5e-44 183.0 140 70.0
Aa31LG8G4800 Aethionema arabicum HOM05D007021 ORTHO05D008916 3.3e-44 182.6 126 77.0
ECA232G1431 Erigeron canadensis HOM05D000006 ORTHO05D000091 3.3e-44 182.6 116 81.0
CARHR093260 Cardamine hirsuta HOM05D007021 ORTHO05D008916 7.3e-44 181.4 124 75.0
Lj4g0002555 Lotus japonicus HOM05D007021 ORTHO05D008916 7.3e-44 181.4 117 78.6
C05p48360 Brassica napus HOM05D007021 ORTHO05D008916 9.5e-44 181.0 147 66.0
Gorai.004G090100 Gossypium raimondii HOM05D007021 ORTHO05D008916 1.2e-43 180.6 150 67.3
Psat7g001280 Pisum sativum HOM05D007021 ORTHO05D008916 1.2e-43 180.6 139 72.7
arahy.Tifrunner.gnm1.ann1.2FQ1SS Arachis hypogaea HOM05D007021 ORTHO05D008916 1.6e-43 180.3 111 82.9
arahy.Tifrunner.gnm1.ann1.I2I16V Arachis hypogaea HOM05D007021 ORTHO05D008916 1.6e-43 180.3 104 87.5
BcaC05g28735 Brassica carinata HOM05D007021 ORTHO05D008916 1.6e-43 180.3 111 81.1
A05p31870 Brassica napus HOM05D007021 ORTHO05D008916 1.6e-43 180.3 111 81.1
BolC5t33573H Brassica oleracea HOM05D007021 ORTHO05D008916 1.6e-43 180.3 111 81.1
BraA05t22019Z Brassica rapa HOM05D007021 ORTHO05D008916 1.6e-43 180.3 111 81.1
TPR.G1394 Trifolium pratense HOM05D007021 ORTHO05D008916 2.1e-43 179.9 122 77.9
Hund08707 Selenicereus undatus HOM05D007021 ORTHO05D008916 3.6e-43 179.1 170 60.6
Cc04_g06110 Coffea canephora HOM05D007021 ORTHO05D008916 4.7e-43 178.7 105 86.7
HPP92_019433 Vanilla planifolia HOM05D007021 ORTHO05D008916 1.1e-42 177.6 131 71.8
THA.LOC104821829 Tarenaya hassleriana HOM05D007021 ORTHO05D008916 1.4e-42 177.2 123 74.8
MBI13_g41749_MAGBIO Magnolia biondii HOM05D007021 ORTHO05D008916 3.1e-42 176.0 105 82.9
unitig_899.g15339 Utricularia gibba HOM05D007021 ORTHO05D008916 3.1e-42 176.0 119 78.2
Gohir.1Z049463 Gossypium hirsutum HOM05D007021 ORTHO05D008916 6.8e-42 174.9 199 57.3
PSO384G2008 Papaver somniferum HOM05D007021 ORTHO05D008916 8.9e-42 174.5 130 73.8
Medtr8g107430 Medicago truncatula HOM05D007021 ORTHO05D008916 1.2e-41 174.1 104 85.6
Oeu046158.1 Olea europaea HOM05D007021 ORTHO05D008916 1.2e-41 174.1 105 82.9
AL3G31100 Arabidopsis lyrata HOM05D007021 ORTHO05D008916 1.5e-41 173.7 105 82.9
AT3G17930 Arabidopsis thaliana HOM05D007021 ORTHO05D008916 1.5e-41 173.7 105 82.9
Carub.0003s1766 Capsella rubella HOM05D007021 ORTHO05D008916 2.6e-41 172.9 105 81.9
ATR1096G089 Amborella trichopoda HOM05D007021 ORTHO05D008916 5.8e-41 171.8 130 72.3
EL10Ac8g19152 Beta vulgaris HOM05D007021 ORTHO05D008916 1.3e-40 170.6 164 59.8
Os01g0805200 Oryza sativa ssp. japonica HOM05D007021 ORTHO05D008916 2.2e-40 169.9 105 80.0
Haze_18883 Corylus avellana HOM05D007021 ORTHO05D008916 6.4e-40 168.3 152 63.8
Duzib068G0088 Durio zibethinus HOM05D007021 ORTHO05D008916 8.3e-40 167.9 218 51.4
CDE04G1339 Ceratophyllum demersum HOM05D000015 ORTHO05D002445 1.1e-39 167.5 146 63.7
Zm00001eb150510 Zea mays HOM05D007021 ORTHO05D008916 1.4e-39 167.2 125 67.2
SEGI_41594 Sequoiadendron giganteum HOM05D007021 ORTHO05D008916 3.2e-39 166.0 127 70.1
Pp3c5_23310 Physcomitrium patens HOM05D007021 ORTHO05D008916 6.6e-37 158.3 134 65.7
AagrBONN_evm.TU.Sc2ySwM_340.579 Anthoceros agrestis HOM05D007021 ORTHO05D008916 2.1e-35 153.3 127 63.0
AagrBONN_evm.TU.Sc2ySwM_117.710 Anthoceros agrestis HOM05D007021 ORTHO05D008916 8.1e-35 151.4 127 62.2
CDE07G1635 Ceratophyllum demersum HOM05D007021 ORTHO05D008916 3.1e-34 149.4 150 57.3
Mapoly0023s0040 Marchantia polymorpha HOM05D007021 ORTHO05D008916 1.5e-33 147.1 120 65.0
SMO353G0175 Selaginella moellendorffii HOM05D007021 ORTHO05D008916 1.5e-33 147.1 151 54.3
DCAR_014390 Daucus carota HOM05D007021 ORTHO05D008916 1.9e-31 140.2 86 86.0
CBR_g48186 Chara braunii HOM05D007021 ORTHO05D008916 1.6e-30 137.1 105 61.9
Peaxi162Scf00828g00016 Petunia axillaris HOM05D007021 ORTHO05D008916 4.6e-30 135.6 86 84.9
AUR62029014 Chenopodium quinoa HOM05D007021 ORTHO05D008916 7.3e-28 128.3 76 82.9
AUR62025165 Chenopodium quinoa HOM05D007021 ORTHO05D008916 2.1e-27 126.7 163 49.1
Cre01.g000850 Chlamydomonas reinhardtii HOM05D007021 ORTHO05D008916 2.1e-27 126.7 106 59.4
MD14G1237400 Malus domestica HOM05D007021 ORTHO05D008916 1.3e-24 117.5 184 41.8
Oeu010907.1 Olea europaea HOM05D007021 ORTHO05D008916 3.3e-20 102.8 114 54.4
MCO16G182 Micromonas commoda HOM05D007021 ORTHO05D008916 8.1e-19 98.2 158 39.9
PRCOL_00000692 Prasinoderma coloniale HOM05D007021 ORTHO05D008916 4.5e-17 92.4 102 49.0
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 2.1e-06 57.0 45 60.0


User provided reference genes

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