Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0178201 Rosa chinensis HOM05D004562 ORTHO05D005435 0.0e+00 2209.9 1121 100.0
FAN13G2245 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1963.3 1122 89.2
FAN08G1802 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1958.0 1122 88.9
FAN18G3714 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1939.1 1122 88.7
FAN04G0449 Fragaria x ananassa HOM05D004562 ORTHO05D005435 0.0e+00 1936.4 1122 88.3
FvH4_5g17490 Fragaria vesca HOM05D004562 ORTHO05D005435 0.0e+00 1933.3 1122 88.5
MD14G1237500 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1593.2 1124 74.8
MD06G1228300 Malus domestica HOM05D004562 ORTHO05D005435 0.0e+00 1523.5 1145 71.4
Prupe.5G234800 Prunus persica HOM05D004562 ORTHO05D005435 0.0e+00 1494.2 999 78.5
Cfa019638 Carpinus fangiana HOM05D004562 ORTHO05D005435 0.0e+00 1342.4 1136 64.5
QL10p030682 Quercus lobata HOM05D004562 ORTHO05D005435 0.0e+00 1336.2 1133 63.7
Dinv02642 Davidia involucrata HOM05D004562 ORTHO05D005435 0.0e+00 1286.6 1143 61.9
COL.COLO4_28896 Corchorus olitorius HOM05D004562 ORTHO05D005435 0.0e+00 1283.1 1135 61.6
TWI60G0891 Tripterygium wilfordii HOM05D004562 ORTHO05D005435 0.0e+00 1255.0 1129 61.3
CANSAT80G2549 Cannabis sativa HOM05D004562 ORTHO05D005435 0.0e+00 1224.5 1131 60.7
Ciclev10007290m.g Citrus clementina HOM05D004562 ORTHO05D005435 0.0e+00 1223.4 1135 61.1
Gorai.008G290800 Gossypium raimondii HOM05D004562 ORTHO05D005435 0.0e+00 1223.0 1142 59.8
Haze_18884 Corylus avellana HOM05D004562 ORTHO05D005435 0.0e+00 1210.3 1133 60.0
Potri.015G036300 Populus trichocarpa HOM05D004562 ORTHO05D005435 0.0e+00 1174.5 1134 58.6
Glyma.08G055400 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1170.6 1133 57.1
Glyma.05G247000 Glycine max HOM05D004562 ORTHO05D005435 0.0e+00 1160.6 1130 57.2
Ca_17180_v3 Cicer arietinum L. HOM05D004562 ORTHO05D005435 0.0e+00 1147.9 1130 56.5
GSVIVG01008458001 Vitis vinifera HOM05D004562 ORTHO05D005435 0.0e+00 1142.5 1121 57.9
Thecc.03G058700 Theobroma cacao HOM05D004562 ORTHO05D005435 0.0e+00 1140.2 1141 57.1
Sabra15G0029800 Salix brachista HOM05D004562 ORTHO05D005435 0.0e+00 1133.6 1134 56.9
Lj4g0011431 Lotus japonicus HOM05D004562 ORTHO05D005435 0.0e+00 1130.9 1136 56.2
Lalb_Chr09g0330331 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1130.2 1125 55.8
Actinidia35140 Actinidia chinensis HOM05D004562 ORTHO05D005435 0.0e+00 1129.4 1143 55.9
Psat7g001240 Pisum sativum HOM05D004562 ORTHO05D005435 0.0e+00 1123.6 1130 55.2
Medtr8g107440 Medicago truncatula HOM05D004562 ORTHO05D005435 0.0e+00 1121.7 1136 55.6
Sed0003970 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1120.5 1138 56.7
TPR.G1465 Trifolium pratense HOM05D004562 ORTHO05D005435 0.0e+00 1119.4 1107 56.0
PGR044G1246 Punica granatum HOM05D004562 ORTHO05D005435 0.0e+00 1115.1 1131 56.1
Rhsim12G0137700 Rhododendron simsii HOM05D004562 ORTHO05D005435 0.0e+00 1112.8 1157 55.6
Lalb_Chr05g0221581 Lupinus albus HOM05D004562 ORTHO05D005435 0.0e+00 1111.3 1134 55.0
Eucgr.K02277 Eucalyptus grandis HOM05D004562 ORTHO05D005435 0.0e+00 1099.0 1130 56.6
Manes.06G004700 Manihot esculenta HOM05D004562 ORTHO05D005435 0.0e+00 1097.0 1118 56.8
arahy.Tifrunner.gnm1.ann1.WQ60SD Arachis hypogaea HOM05D004562 ORTHO05D005435 0.0e+00 1090.1 1130 54.9
CsaV3_1G004480 Cucumis sativus L. HOM05D004562 ORTHO05D005435 0.0e+00 1090.1 1139 54.9
Nn4g24285 Nelumbo nucifera HOM05D004562 ORTHO05D005435 0.0e+00 1086.2 1154 53.9
Gohir.D12G270500 Gossypium hirsutum HOM05D004562 ORTHO05D005435 0.0e+00 1085.5 1002 61.2
vmacro16407 Vaccinium macrocarpon HOM05D004562 ORTHO05D005435 0.0e+00 1079.3 1147 54.8
Peaxi162Scf00314g00332 Petunia axillaris HOM05D004562 ORTHO05D005435 0.0e+00 1077.4 1133 54.2
Sed0022497 Sechium edule HOM05D004562 ORTHO05D005435 0.0e+00 1075.1 1136 54.6
PGSC0003DMG400005676 Solanum tuberosum HOM05D004562 ORTHO05D005435 1.5e-311 1073.2 1132 52.9
CAN.G843.49 Capsicum annuum HOM05D004562 ORTHO05D005435 1.2e-310 1070.1 1121 53.6
MBI13_g01852_MAGBIO Magnolia biondii HOM05D004562 ORTHO05D005435 1.1e-308 1063.5 1166 52.9
Duzib205G1225 Durio zibethinus HOM05D004562 ORTHO05D005435 1.3e-306 1056.6 1145 54.5
Sopen03g037570 Solanum pennellii HOM05D004562 ORTHO05D005435 5.6e-305 1051.2 1132 51.9
Aqoxy3G00029 Aquilegia oxysepala HOM05D004562 ORTHO05D005435 9.6e-305 1050.4 1147 52.8
Cc04_g06100 Coffea canephora HOM05D004562 ORTHO05D005435 2.8e-304 1048.9 1125 54.3
VMungo0251G1597 Vigna mungo HOM05D004562 ORTHO05D005435 2.8e-304 1048.9 1127 53.2
arahy.Tifrunner.gnm1.ann1.G227WQ Arachis hypogaea HOM05D004562 ORTHO05D005435 2.4e-303 1045.8 1130 53.4
Solyc03g118620.3 Solanum lycopersicum HOM05D004562 ORTHO05D005435 3.1e-303 1045.4 1132 51.7
MSTRG.9309 Avicennia marina HOM05D004562 ORTHO05D005435 9.9e-302 1040.4 1155 51.9
Gohir.A12G270000 Gossypium hirsutum HOM05D004562 ORTHO05D005435 2.9e-301 1038.9 971 60.4
MELO3C017375.2 Cucumis melo HOM05D004562 ORTHO05D005435 2.1e-299 1032.7 1048 56.5
CiPaw.15G144500 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.0e-298 1030.4 954 60.3
ClCG06G014190 Citrullus lanatus HOM05D004562 ORTHO05D005435 5.3e-295 1018.1 1124 53.4
THA.LOC104820345 Tarenaya hassleriana HOM05D004562 ORTHO05D005435 6.9e-295 1017.7 1138 52.3
Phvul.002G331100 Phaseolus vulgaris HOM05D004562 ORTHO05D005435 2.2e-293 1012.7 999 57.1
AUR62029906 Chenopodium quinoa HOM05D004562 ORTHO05D005435 6.9e-287 991.1 1134 51.4
CiPaw.16G096100 Carya illinoinensis HOM05D004562 ORTHO05D005435 1.2e-286 990.3 874 62.8
Nn3g18314 Nelumbo nucifera HOM05D004562 ORTHO05D005435 4.5e-286 988.4 1213 49.1
HanXRQChr09g0268071 Helianthus annuus HOM05D004562 ORTHO05D005435 1.3e-285 986.9 1125 51.1
PSO478G3379 Papaver somniferum HOM05D004562 ORTHO05D005435 2.2e-285 986.1 1173 50.1
Oeu026264.3 Olea europaea HOM05D004562 ORTHO05D005435 2.3e-282 976.1 1214 48.6
EL10Ac8g19501 Beta vulgaris HOM05D004562 ORTHO05D005435 2.1e-280 969.5 1134 50.4
Lj5A159T41 Lonicera japonica HOM05D004562 ORTHO05D005435 2.8e-280 969.1 1164 50.2
AUR62033795 Chenopodium quinoa HOM05D004562 ORTHO05D005435 3.1e-279 965.7 1136 50.7
CARHR038150 Cardamine hirsuta HOM05D004562 ORTHO05D005435 1.6e-275 953.4 1118 48.6
Sp3g16040 Schrenkiella parvula HOM05D004562 ORTHO05D005435 1.3e-274 950.3 1126 49.8
Thhalv10019973m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.8e-274 949.9 1125 49.9
PSO017G6436 Papaver somniferum HOM05D004562 ORTHO05D005435 2.2e-272 943.0 1153 49.3
AL1G55180 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 8.2e-272 941.0 1123 48.0
AL3G31090 Arabidopsis lyrata HOM05D004562 ORTHO05D005435 1.4e-271 940.3 1135 49.3
AT3G17920 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 4.1e-271 938.7 1123 49.4
BcaC05g28736 Brassica carinata HOM05D004562 ORTHO05D005435 6.9e-271 937.9 1128 48.9
BolC5t33574H Brassica oleracea HOM05D004562 ORTHO05D005435 6.9e-271 937.9 1128 48.9
C05p48370 Brassica napus HOM05D004562 ORTHO05D005435 1.2e-270 937.2 1129 48.6
BcaB07g33749 Brassica carinata HOM05D004562 ORTHO05D005435 1.5e-270 936.8 1127 49.6
ATR0753G019 Amborella trichopoda HOM05D004562 ORTHO05D005435 4.5e-270 935.3 1158 49.2
BraA05t22020Z Brassica rapa HOM05D004562 ORTHO05D005435 2.2e-269 932.9 1125 48.8
Carub.0003s1765 Capsella rubella HOM05D004562 ORTHO05D005435 2.2e-269 932.9 1121 48.7
A05p31880 Brassica napus HOM05D004562 ORTHO05D005435 1.4e-268 930.2 1127 48.8
DCAR_011617 Daucus carota HOM05D004562 ORTHO05D005435 2.5e-268 929.5 1138 48.5
C06p03060 Brassica napus HOM05D004562 ORTHO05D005435 9.4e-268 927.5 1124 48.6
BcaC08g43044 Brassica carinata HOM05D004562 ORTHO05D005435 2.1e-267 926.4 1124 48.6
A06p04420 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-266 924.1 1125 48.5
Sc12g0007950 Simmondsia chinensis HOM05D004562 ORTHO05D005435 2.3e-266 922.9 1085 51.2
Carub.0001s3765 Capsella rubella HOM05D004562 ORTHO05D005435 3.9e-266 922.2 1127 47.5
HanXRQChr02g0032401 Helianthus annuus HOM05D004562 ORTHO05D005435 1.5e-265 920.2 1127 47.7
BolC6t35426H Brassica oleracea HOM05D004562 ORTHO05D005435 2.0e-265 919.8 1125 48.9
BcaB06g25854 Brassica carinata HOM05D004562 ORTHO05D005435 1.3e-264 917.1 1127 48.6
Sp1g35480 Schrenkiella parvula HOM05D004562 ORTHO05D005435 3.7e-264 915.6 1118 48.3
Aa31LG10G5260 Aethionema arabicum HOM05D004562 ORTHO05D005435 5.3e-263 911.8 1179 47.4
Thhalv10011201m.g Eutrema salsugineum HOM05D004562 ORTHO05D005435 1.2e-262 910.6 1133 47.8
Aa31LG8G4790 Aethionema arabicum HOM05D004562 ORTHO05D005435 3.4e-262 909.1 1120 47.5
BraA06t23647Z Brassica rapa HOM05D004562 ORTHO05D005435 7.7e-262 907.9 1162 47.2
Lsat_1_v5_gn_2_14940 Lactuca sativa HOM05D004562 ORTHO05D005435 2.5e-260 902.9 1127 48.6
ECA238G1924 Erigeron canadensis HOM05D004562 ORTHO05D005435 7.2e-260 901.4 1131 47.7
Ah.14g085940 Amaranthus hybridus HOM05D004562 ORTHO05D005435 7.9e-259 897.9 1137 48.2
AT1G48540 Arabidopsis thaliana HOM05D004562 ORTHO05D005435 1.8e-258 896.7 1049 49.0
Atru.chr9.1669 Acer truncatum HOM05D004562 ORTHO05D005435 3.9e-258 895.6 902 57.4
TAR374G0462 Trochodendron aralioides HOM05D004562 ORTHO05D005435 8.5e-245 851.3 751 63.0
HPP92_016742 Vanilla planifolia HOM05D004562 ORTHO05D005435 1.9e-244 850.1 1149 44.8
Gorai.005G132200 Gossypium raimondii HOM05D004562 ORTHO05D005435 1.0e-242 844.3 687 66.4
Gohir.D02G121900 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.5e-241 838.2 687 66.1
CSS0019251 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 2.8e-232 809.7 687 64.9
Zm00001eb008950 Zea mays HOM05D004562 ORTHO05D005435 5.4e-231 805.4 1136 43.9
Os03g0221800 Oryza sativa ssp. japonica HOM05D004562 ORTHO05D005435 7.0e-231 805.1 1142 43.7
Actinidia18882 Actinidia chinensis HOM05D004562 ORTHO05D005435 9.5e-228 794.7 879 53.0
Manes.14G172200 Manihot esculenta HOM05D004562 ORTHO05D005435 4.4e-225 785.8 896 51.8
Migut.D01318 Erythranthe guttata HOM05D004562 ORTHO05D005435 5.9e-222 775.4 775 57.2
SGA_v2.0_scaffold172G39021 Striga asiatica HOM05D004562 ORTHO05D005435 4.4e-217 759.2 778 56.2
Potri.012G045300 Populus trichocarpa HOM05D004562 ORTHO05D005435 1.1e-215 754.6 553 72.0
Sabra12G0031500 Salix brachista HOM05D004562 ORTHO05D005435 2.8e-211 740.0 966 48.4
SalBow1G2489 Salvia bowleyana HOM05D004562 ORTHO05D005435 4.0e-210 736.1 652 61.7
CARHR093250 Cardamine hirsuta HOM05D004562 ORTHO05D005435 6.4e-208 728.8 869 50.2
Hund22308 Selenicereus undatus HOM05D004562 ORTHO05D005435 6.8e-202 708.8 880 49.1
Cpa.g.sc3.379 Carica papaya HOM05D004562 ORTHO05D005435 1.4e-199 701.0 658 61.4
Nitab4.5_0001264g0030 Nicotiana tabacum HOM05D004562 ORTHO05D005435 2.4e-199 700.3 533 68.1
Nitab4.5_0010397g0020 Nicotiana tabacum HOM05D004562 ORTHO05D005435 8.4e-192 675.2 456 74.1
CDE05G0309 Ceratophyllum demersum HOM05D004562 ORTHO05D005435 9.0e-186 655.2 1134 39.3
unitig_46.g18720 Utricularia gibba HOM05D004562 ORTHO05D005435 1.3e-181 641.3 656 55.9
SEGI_15130 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 1.5e-172 611.3 912 43.6
Hma1.2p1_0163F.1_g072990 Hydrangea macrophylla HOM05D004562 ORTHO05D005435 8.2e-155 552.4 725 48.0
Mapoly0118s0042 Marchantia polymorpha HOM05D004562 ORTHO05D005435 4.0e-133 480.3 676 42.2
Pp3c10_10590 Physcomitrium patens HOM05D004562 ORTHO05D005435 4.4e-132 476.9 783 39.6
CSS0012259 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 8.0e-126 456.1 615 47.6
CSS0009282 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-125 455.3 268 85.4
CSS0039239 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.4e-125 455.3 268 85.4
CSS0042944 Camellia sinensis var. sinensis HOM05D004562 ORTHO05D005435 1.8e-125 454.9 615 47.5
Gohir.A03G092940 Gossypium hirsutum HOM05D004562 ORTHO05D005435 1.1e-122 445.7 437 58.1
AagrBONN_evm.TU.Sc2ySwM_228.5527 Anthoceros agrestis HOM05D004562 ORTHO05D005435 2.8e-102 377.9 328 57.6
Gohir.A03G092980 Gossypium hirsutum HOM05D004562 ORTHO05D005435 7.1e-90 336.7 206 82.5
Duzib084G0184 Durio zibethinus HOM05D004562 ORTHO05D005435 2.4e-85 321.6 651 38.2
SEGI_31258 Sequoiadendron giganteum HOM05D004562 ORTHO05D005435 8.7e-72 276.6 780 30.4
AUR62044432 Chenopodium quinoa HOM05D004562 ORTHO05D005435 4.9e-67 260.8 691 32.0
CBR_g38780 Chara braunii HOM05D004562 ORTHO05D005435 3.3e-63 248.1 578 31.1
SHI19076 Sapria himalayana HOM05D004562 ORTHO05D005435 4.0e-53 214.5 142 76.8
SHI19074 Sapria himalayana HOM05D004562 ORTHO05D005435 2.5e-42 178.7 131 64.9
CAN.G59.9 Capsicum annuum HOM05D004562 ORTHO05D005435 2.3e-40 172.2 157 61.8
CAN.G1490.14 Capsicum annuum HOM05D004562 ORTHO05D005435 2.8e-38 165.2 91 90.1
CAN.G1687.2 Capsicum annuum HOM05D004562 ORTHO05D005435 1.9e-34 152.5 157 58.0
TAR374G0732 Trochodendron aralioides HOM05D004562 ORTHO05D005435 1.2e-33 149.8 179 45.8
SHI19075 Sapria himalayana HOM05D004562 ORTHO05D005435 7.9e-33 147.1 87 80.5
MCO11G516 Micromonas commoda HOM05D004562 ORTHO05D005435 2.4e-21 109.0 384 28.1
CAN.G22.26 Capsicum annuum HOM05D001423 ORTHO05D001412 1.7e-19 102.8 67 71.6
Cpa.g.sc3.375 Carica papaya HOM05D000419 ORTHO05D000692 4.0e-16 91.7 78 60.3
SHI19073 Sapria himalayana HOM05D004562 ORTHO05D005435 1.2e-15 90.1 381 28.1
C03p70010 Brassica napus HOM05D004562 ORTHO05D005435 2.2e-11 75.9 118 38.1
C09p22450 Brassica napus HOM05D004562 ORTHO05D005435 1.0e-08 67.0 123 38.2
BolC3t19259H Brassica oleracea HOM05D004562 ORTHO05D005435 1.2e-07 63.5 111 36.9
BolC9t55163H Brassica oleracea HOM05D004562 ORTHO05D005435 4.4e-07 61.6 112 38.4


User provided reference genes

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