Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 0.0e+00 2234.9 1167 100.0
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1973.0 1172 88.6
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 0.0e+00 1962.6 1172 88.8
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1958.3 1172 88.7
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1946.0 1165 88.7
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 0.0e+00 1942.2 1174 88.0
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 0.0e+00 1775.4 1166 80.6
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 0.0e+00 1765.4 1169 79.9
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 0.0e+00 1498.4 1177 70.0
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 0.0e+00 1481.1 1171 68.1
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 0.0e+00 1478.0 1174 66.2
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 0.0e+00 1459.9 1167 66.9
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 0.0e+00 1454.1 1171 65.1
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 0.0e+00 1448.0 1162 66.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 0.0e+00 1446.4 1170 64.5
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 0.0e+00 1442.9 1164 65.6
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 0.0e+00 1441.0 1172 65.8
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 0.0e+00 1439.5 1164 65.6
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 0.0e+00 1437.2 1196 63.9
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 0.0e+00 1423.7 1184 63.9
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 0.0e+00 1412.9 1182 62.9
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 0.0e+00 1411.0 1170 65.0
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 0.0e+00 1409.8 1177 64.4
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 0.0e+00 1405.2 1276 59.7
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 0.0e+00 1402.9 1185 63.1
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 0.0e+00 1401.0 1185 62.7
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1400.2 1045 67.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 0.0e+00 1397.9 1182 65.2
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1393.6 1199 62.6
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 0.0e+00 1392.5 1168 63.8
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1381.7 1175 63.3
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 0.0e+00 1378.6 1176 63.5
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 0.0e+00 1378.2 1172 63.4
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 0.0e+00 1377.8 1177 64.6
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 0.0e+00 1373.2 1161 63.4
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1371.3 1161 63.3
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 0.0e+00 1367.8 1045 66.7
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 0.0e+00 1364.4 1163 63.6
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 0.0e+00 1349.7 1163 62.7
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 0.0e+00 1346.6 1354 57.9
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 0.0e+00 1343.9 1176 61.7
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 0.0e+00 1340.9 1169 63.7
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 0.0e+00 1338.9 1179 62.7
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 0.0e+00 1333.2 1231 58.3
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 0.0e+00 1323.5 1649 50.2
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 0.0e+00 1321.6 1185 60.5
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 0.0e+00 1318.5 1136 61.2
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 0.0e+00 1315.8 1185 60.6
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 0.0e+00 1313.5 1178 60.4
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 0.0e+00 1310.4 1174 59.1
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 0.0e+00 1303.9 1167 59.7
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 0.0e+00 1300.4 1169 60.3
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1293.9 1168 61.0
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1279.2 1168 60.1
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 0.0e+00 1274.6 1082 63.5
Lj9C414G14 Lonicera japonica HOM05D006302 ORTHO05D007960 0.0e+00 1251.1 951 65.7
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 0.0e+00 1248.0 1186 57.7
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 0.0e+00 1246.9 1203 58.4
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 0.0e+00 1245.3 1176 58.1
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 0.0e+00 1244.2 1179 59.8
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 0.0e+00 1233.8 1145 60.3
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 0.0e+00 1228.0 1163 56.0
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 0.0e+00 1226.8 1153 57.2
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 0.0e+00 1218.8 1155 58.8
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 0.0e+00 1218.4 1151 57.8
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1187 55.8
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1156 58.8
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 0.0e+00 1211.8 1156 58.8
Thhalv10019937m.g Eutrema salsugineum HOM05D006302 ORTHO05D007960 0.0e+00 1211.1 1168 55.7
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 0.0e+00 1209.1 1182 56.3
Carub.0003s1747 Capsella rubella HOM05D006302 ORTHO05D007960 0.0e+00 1207.6 1170 57.2
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 0.0e+00 1205.7 1178 56.3
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 0.0e+00 1190.3 1167 57.0
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 0.0e+00 1181.0 1158 56.4
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 0.0e+00 1171.8 1135 57.6
A05p32110 Brassica napus HOM05D006302 ORTHO05D007960 0.0e+00 1157.5 1006 60.2
AT3G17740 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 0.0e+00 1155.6 1171 53.9
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 0.0e+00 1150.6 1139 56.8
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 0.0e+00 1134.4 1170 54.9
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 0.0e+00 1128.6 1072 57.7
BraA05t22040Z Brassica rapa HOM05D006302 ORTHO05D007960 0.0e+00 1112.8 1156 53.4
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 0.0e+00 1090.5 1046 54.9
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 9.3e-303 1043.9 1256 48.6
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 3.1e-298 1028.9 1040 52.1
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 1.1e-295 1020.4 1156 50.8
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 2.6e-281 972.6 1162 47.7
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 6.5e-280 968.0 982 54.2
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.6e-262 910.2 837 60.1
Sc10g0008940 Simmondsia chinensis HOM05D006302 ORTHO05D007960 1.0e-256 891.0 719 61.2
CARHR093080 Cardamine hirsuta HOM05D006302 ORTHO05D007960 3.8e-256 889.0 727 62.9
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 7.5e-252 874.8 1063 45.4
Glyma.09G169600 Glycine max HOM05D006302 ORTHO05D007960 3.3e-239 832.8 635 66.1
Ca_22760_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 1.9e-234 817.0 662 64.0
Ca_05032_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 3.2e-234 816.2 659 64.3
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 3.1e-229 799.7 1043 45.3
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.5e-199 701.0 674 56.5
AT3G17712 Arabidopsis thaliana HOM05D006302 ORTHO05D007960 7.6e-196 688.7 798 49.6
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 1.3e-195 688.0 1060 40.2
Mapoly0172s0015 Marchantia polymorpha HOM05D006302 ORTHO05D007960 1.1e-191 674.9 987 40.2
SMO340G0100 Selaginella moellendorffii HOM05D006302 ORTHO05D007960 1.8e-181 641.0 1039 36.6
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 5.3e-181 639.4 1075 37.5
Cpa.g.sc7.123 Carica papaya HOM05D006302 ORTHO05D007960 3.8e-179 633.3 494 67.0
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 9.7e-175 618.6 1061 37.0
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 2.3e-144 517.7 1231 30.8
C05p48600 Brassica napus HOM05D006302 ORTHO05D007960 4.3e-114 417.2 438 54.8
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.1e-105 388.3 415 55.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 6.3e-65 253.8 356 39.9
Ah.14g085900 Amaranthus hybridus HOM05D006302 ORTHO05D007960 8.5e-62 243.4 179 65.4
Cpa.g.sc7.122 Carica papaya HOM05D006302 ORTHO05D007960 1.0e-38 166.8 116 66.4
Cre13.g589650 Chlamydomonas reinhardtii HOM05D006302 ORTHO05D007960 2.8e-25 122.1 331 27.5
Medtr6g072590 Medicago truncatula HOM05D000005 ORTHO05D000012 5.8e-18 97.8 95 49.5
Medtr6g074610 Medicago truncatula HOM05D006302 ORTHO05D007960 7.5e-18 97.4 157 37.6
Medtr6g075030 Medicago truncatula HOM05D006302 ORTHO05D007960 6.0e-15 87.8 81 55.6
Actinidia04194 Actinidia chinensis HOM05D006302 ORTHO05D007960 6.2e-12 77.8 72 55.6
Medtr6g072640 Medicago truncatula HOM05D006302 ORTHO05D007960 8.9e-11 73.9 61 62.3
COL.COLO4_09240 Corchorus olitorius HOM05D006302 ORTHO05D007960 7.5e-10 70.9 40 77.5
Cpa.g.sc7.124 Carica papaya HOM05D006302 ORTHO05D007960 6.4e-09 67.8 174 43.7
Cpa.g.c41962 Carica papaya HOM05D006302 ORTHO05D007960 8.3e-09 67.4 37 83.8
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.1e-08 67.0 85 43.5
Lsat_1_v5_gn_5_105340 Lactuca sativa HOM05D006302 ORTHO05D007960 1.6e-07 63.2 77 40.3
SGA_v2.0_scaffold100G29654 Striga asiatica HOM05D006302 ORTHO05D007960 2.0e-07 62.8 35 77.1
Actinidia02680 Actinidia chinensis HOM05D006302 ORTHO05D000044 2.7e-07 62.4 43 67.4
Medtr6g072310 Medicago truncatula HOM05D000005 ORTHO05D000012 3.5e-07 62.0 76 47.4
Medtr6g074160 Medicago truncatula HOM05D006302 ORTHO05D007960 1.7e-06 59.7 41 65.9


User provided reference genes

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