Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr7g0176901 Rosa chinensis HOM05D006666 ORTHO05D008276 7.0e-75 283.9 145 100.0
FAN13G2387 Fragaria x ananassa HOM05D006666 ORTHO05D008276 5.6e-56 221.1 124 90.3
FAN04G1657 Fragaria x ananassa HOM05D006666 ORTHO05D008276 7.3e-56 220.7 124 89.5
FvH4_5g18600 Fragaria vesca HOM05D006666 ORTHO05D008276 2.8e-55 218.8 124 89.5
FAN18G1406 Fragaria x ananassa HOM05D006666 ORTHO05D008276 2.8e-55 218.8 124 89.5
FAN08G1977 Fragaria x ananassa HOM05D006666 ORTHO05D008276 3.6e-55 218.4 124 88.7
Prupe.5G245400 Prunus persica HOM05D006666 ORTHO05D008276 1.3e-41 173.3 127 74.0
MD14G1247300 Malus domestica HOM05D006666 ORTHO05D008276 2.6e-37 159.1 132 68.2
Haze_18405 Corylus avellana HOM05D006666 ORTHO05D008276 2.7e-34 149.1 132 64.4
CiPaw.16G075700 Carya illinoinensis HOM05D006666 ORTHO05D008276 6.0e-34 147.9 132 65.9
MD06G1241100 Malus domestica HOM05D006666 ORTHO05D008276 6.0e-34 147.9 143 60.8
Cfa017808 Carpinus fangiana HOM05D006666 ORTHO05D008276 7.9e-34 147.5 131 64.1
Dinv09758 Davidia involucrata HOM05D006666 ORTHO05D008276 5.3e-30 134.8 127 60.6
PGR083G1370 Punica granatum HOM05D006666 ORTHO05D008276 1.5e-29 133.3 145 53.1
CSS0032824 Camellia sinensis var. sinensis HOM05D006666 ORTHO05D008276 5.8e-29 131.3 125 60.0
Eucgr.H00663 Eucalyptus grandis HOM05D006666 ORTHO05D008276 3.8e-28 128.6 121 60.3
PSO063G5885 Papaver somniferum HOM05D006666 ORTHO05D008276 3.8e-28 128.6 126 54.8
PSO782G1773 Papaver somniferum HOM05D006666 ORTHO05D008276 3.8e-28 128.6 126 54.8
Ciclev10023646m.g Citrus clementina HOM05D006666 ORTHO05D008276 4.9e-28 128.3 93 68.8
Sopen03g029740 Solanum pennellii HOM05D006666 ORTHO05D008276 4.9e-28 128.3 119 59.7
Solyc03g019880.3 Solanum lycopersicum HOM05D006666 ORTHO05D008276 3.2e-27 125.6 131 56.5
Atru.chr9.23 Acer truncatum HOM05D006666 ORTHO05D008276 1.2e-26 123.6 106 62.3
TAR629G2781 Trochodendron aralioides HOM05D006666 ORTHO05D008276 1.6e-26 123.2 110 62.7
EL10Ac7g16891 Beta vulgaris HOM05D006666 ORTHO05D008276 2.7e-26 122.5 111 59.5
Potri.004G066900 Populus trichocarpa HOM05D006666 ORTHO05D008276 2.7e-26 122.5 131 56.5
PGSC0003DMG400015210 Solanum tuberosum HOM05D006666 ORTHO05D008276 2.7e-26 122.5 127 58.3
AUR62037011 Chenopodium quinoa HOM05D006666 ORTHO05D008276 3.5e-26 122.1 123 53.7
MBI06_g22566_MAGBIO Magnolia biondii HOM05D006666 ORTHO05D008276 6.0e-26 121.3 107 58.9
Actinidia02653 Actinidia chinensis HOM05D006666 ORTHO05D008276 1.3e-25 120.2 95 66.3
Ah.15g090740 Amaranthus hybridus HOM05D006666 ORTHO05D008276 1.3e-25 120.2 105 59.0
AUR62006207 Chenopodium quinoa HOM05D006666 ORTHO05D008276 1.3e-25 120.2 79 70.9
Duzib205G1681 Durio zibethinus HOM05D006666 ORTHO05D008276 3.0e-25 119.0 120 55.0
MSTRG.11567 Avicennia marina HOM05D006666 ORTHO05D008276 5.1e-25 118.2 79 70.9
Glyma.10G174200 Glycine max HOM05D006666 ORTHO05D008276 5.1e-25 118.2 86 67.4
Nn4g25066 Nelumbo nucifera HOM05D006666 ORTHO05D008276 5.1e-25 118.2 95 62.1
Thecc.03G072200 Theobroma cacao HOM05D006666 ORTHO05D008276 8.7e-25 117.5 116 56.9
CAN.G861.22 Capsicum annuum HOM05D006666 ORTHO05D008276 1.5e-24 116.7 123 52.8
TWI81G0077 Tripterygium wilfordii HOM05D006666 ORTHO05D008276 1.5e-24 116.7 79 69.6
SGA_v2.0_scaffold25G10726 Striga asiatica HOM05D006666 ORTHO05D008276 1.9e-24 116.3 131 51.9
Ca_09926_v3 Cicer arietinum L. HOM05D006666 ORTHO05D008276 4.3e-24 115.2 87 62.1
Hund06740 Selenicereus undatus HOM05D006666 ORTHO05D008276 4.3e-24 115.2 101 61.4
Sc10g0008660 Simmondsia chinensis HOM05D006666 ORTHO05D008276 4.3e-24 115.2 110 56.4
vmacro17828 Vaccinium macrocarpon HOM05D006666 ORTHO05D008276 4.3e-24 115.2 79 70.9
VMungo0720G1342 Vigna mungo HOM05D006666 ORTHO05D008276 4.3e-24 115.2 112 56.2
Peaxi162Scf00171g00030 Petunia axillaris HOM05D006666 ORTHO05D008276 7.4e-24 114.4 118 54.2
GSVIVG01024243001 Vitis vinifera HOM05D006666 ORTHO05D008276 9.6e-24 114.0 80 75.0
Gohir.A07G062700 Gossypium hirsutum HOM05D006666 ORTHO05D008276 2.1e-23 112.8 103 55.3
Glyma.20G216200 Glycine max HOM05D006666 ORTHO05D008276 3.7e-23 112.1 86 64.0
Hma1.2p1_0816F.1_g222970 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 3.7e-23 112.1 107 59.8
Medtr1g077550 Medicago truncatula HOM05D006666 ORTHO05D008276 3.7e-23 112.1 123 49.6
Nitab4.5_0008182g0010 Nicotiana tabacum HOM05D006666 ORTHO05D008276 3.7e-23 112.1 139 49.6
MELO3C001965.2 Cucumis melo HOM05D006666 ORTHO05D008276 6.2e-23 111.3 131 50.4
Nitab4.5_0009307g0050 Nicotiana tabacum HOM05D006666 ORTHO05D008276 6.2e-23 111.3 132 49.2
ATR0124G047 Amborella trichopoda HOM05D006666 ORTHO05D008276 8.2e-23 110.9 112 56.2
Gorai.001G070900 Gossypium raimondii HOM05D006666 ORTHO05D008276 1.1e-22 110.5 132 46.2
Rhsim08G0006200 Rhododendron simsii HOM05D006666 ORTHO05D008276 1.1e-22 110.5 139 52.5
Phvul.L006501 Phaseolus vulgaris HOM05D006666 ORTHO05D008276 1.4e-22 110.2 87 64.4
DCAR_011403 Daucus carota HOM05D006666 ORTHO05D008276 1.8e-22 109.8 124 50.8
Gohir.D07G067300 Gossypium hirsutum HOM05D006666 ORTHO05D008276 1.8e-22 109.8 122 50.8
Lsat_1_v5_gn_8_1660 Lactuca sativa HOM05D006666 ORTHO05D008276 1.8e-22 109.8 128 51.6
AL1G41680 Arabidopsis lyrata HOM05D006666 ORTHO05D008276 2.4e-22 109.4 93 62.4
BcaC05g26820 Brassica carinata HOM05D006666 ORTHO05D008276 2.4e-22 109.4 96 63.5
C05p26900 Brassica napus HOM05D006666 ORTHO05D008276 2.4e-22 109.4 131 52.7
BolC5t31408H Brassica oleracea HOM05D006666 ORTHO05D008276 2.4e-22 109.4 96 63.5
THA.LOC104812606 Tarenaya hassleriana HOM05D006666 ORTHO05D008276 2.4e-22 109.4 130 55.4
TPR.G8870 Trifolium pratense HOM05D006666 ORTHO05D008276 2.4e-22 109.4 87 62.1
SalBow5G0154 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.1e-22 109.0 79 65.8
Thhalv10009115m.g Eutrema salsugineum HOM05D006666 ORTHO05D008276 4.0e-22 108.6 72 73.6
Lj5g0025802 Lotus japonicus HOM05D006666 ORTHO05D008276 4.0e-22 108.6 81 65.4
BcaC06g35338 Brassica carinata HOM05D006666 ORTHO05D008276 5.3e-22 108.2 79 70.9
C07p17240 Brassica napus HOM05D006666 ORTHO05D008276 5.3e-22 108.2 79 70.9
BolC7t42228H Brassica oleracea HOM05D006666 ORTHO05D008276 5.3e-22 108.2 79 70.9
CDE06G1954 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 5.3e-22 108.2 94 64.9
Lalb_Chr21g0311701 Lupinus albus HOM05D006666 ORTHO05D008276 5.3e-22 108.2 81 61.7
Sp1g24340 Schrenkiella parvula HOM05D006666 ORTHO05D008276 5.3e-22 108.2 71 76.1
Aa31sc45G80 Aethionema arabicum HOM05D006666 ORTHO05D008276 9.0e-22 107.5 125 52.8
AT1G28150 Arabidopsis thaliana HOM05D006666 ORTHO05D008276 9.0e-22 107.5 71 73.2
BraA07t28933Z Brassica rapa HOM05D006666 ORTHO05D008276 9.0e-22 107.5 71 74.6
CARHR027620 Cardamine hirsuta HOM05D006666 ORTHO05D008276 1.2e-21 107.1 79 70.9
Manes.02G219900 Manihot esculenta HOM05D006666 ORTHO05D008276 2.0e-21 106.3 73 71.2
Psat6g054440 Pisum sativum HOM05D006666 ORTHO05D008276 2.0e-21 106.3 128 44.5
A07p11450 Brassica napus HOM05D006666 ORTHO05D008276 2.6e-21 105.9 71 74.6
ClCG04G012450 Citrullus lanatus HOM05D006666 ORTHO05D008276 2.6e-21 105.9 100 54.0
BraA09t39302Z Brassica rapa HOM05D006666 ORTHO05D008276 4.5e-21 105.1 72 76.4
BcaB03g13950 Brassica carinata HOM05D006666 ORTHO05D008276 7.6e-21 104.4 71 73.2
Os04g0528100 Oryza sativa ssp. japonica HOM05D006666 ORTHO05D008276 7.6e-21 104.4 111 51.4
Carub.0001s2658 Capsella rubella HOM05D006666 ORTHO05D008276 1.0e-20 104.0 96 58.3
A09p37900 Brassica napus HOM05D006666 ORTHO05D008276 1.3e-20 103.6 72 75.0
CDE04G3444 Ceratophyllum demersum HOM05D006666 ORTHO05D008276 1.7e-20 103.2 95 62.1
Cc00_g07700 Coffea canephora HOM05D006666 ORTHO05D008276 1.7e-20 103.2 79 64.6
Sabra04G0044800 Salix brachista HOM05D006666 ORTHO05D008276 3.8e-20 102.1 164 42.1
SalBow1G4610 Salvia bowleyana HOM05D006666 ORTHO05D008276 3.8e-20 102.1 72 63.9
Sed0024015 Sechium edule HOM05D006666 ORTHO05D008276 3.8e-20 102.1 79 62.0
Migut.O00284 Erythranthe guttata HOM05D006666 ORTHO05D008276 4.9e-20 101.7 114 53.5
ECA233G5286 Erigeron canadensis HOM05D006666 ORTHO05D008276 6.5e-20 101.3 72 69.4
Sabra11G0106200 Salix brachista HOM05D006666 ORTHO05D008276 1.4e-19 100.1 63 77.8
Sabra17G0092500 Salix brachista HOM05D006666 ORTHO05D008276 1.4e-19 100.1 63 77.8
HPP92_021068 Vanilla planifolia HOM05D006666 ORTHO05D008276 1.4e-19 100.1 122 50.8
CsaV3_1G005250 Cucumis sativus L. HOM05D006666 ORTHO05D008276 2.5e-19 99.4 116 49.1
HanXRQChr05g0141151 Helianthus annuus HOM05D006666 ORTHO05D008276 3.2e-19 99.0 79 65.8
SEGI_19522 Sequoiadendron giganteum HOM05D006666 ORTHO05D008276 7.1e-19 97.8 108 49.1
unitig_749.g13724 Utricularia gibba HOM05D006666 ORTHO05D008276 1.3e-17 93.6 79 59.5
arahy.Tifrunner.gnm1.ann1.UGS5Z8 Arachis hypogaea HOM05D006666 ORTHO05D008276 1.8e-17 93.2 152 38.2
COL.COLO4_25502 Corchorus olitorius HOM05D006666 ORTHO05D008276 2.3e-17 92.8 60 73.3
QL10p036089 Quercus lobata HOM05D006666 ORTHO05D008276 5.1e-17 91.7 69 66.7
Aqoxy3G04334 Aquilegia oxysepala HOM05D006666 ORTHO05D008276 6.7e-17 91.3 124 46.0
QL10p036477 Quercus lobata HOM05D006666 ORTHO05D008276 1.1e-16 90.5 61 72.1
AagrBONN_evm.TU.Sc2ySwM_344.686 Anthoceros agrestis HOM05D006666 ORTHO05D008276 2.2e-15 86.3 116 44.8
Oeu038394.2 Olea europaea HOM05D006666 ORTHO05D008276 3.7e-15 85.5 62 67.7
Pp3c19_21970 Physcomitrium patens HOM05D006666 ORTHO05D008276 3.7e-15 85.5 73 50.7
Mapoly0096s0047 Marchantia polymorpha HOM05D006666 ORTHO05D008276 1.8e-14 83.2 79 51.9
SMO143G0007 Selaginella moellendorffii HOM05D006666 ORTHO05D008276 5.9e-13 78.2 79 48.1
COL.COLO4_37022 Corchorus olitorius HOM05D006666 ORTHO05D008276 6.5e-12 74.7 52 69.2
MCO08G267 Micromonas commoda HOM05D006666 ORTHO05D008276 1.1e-11 73.9 78 50.0
Hma1.2p1_0816F.1_g222980 Hydrangea macrophylla HOM05D006666 ORTHO05D008276 4.2e-11 72.0 58 65.5
PRCOL_00004364 Prasinoderma coloniale HOM05D006666 ORTHO05D008276 4.6e-10 68.6 63 44.4
Cre03.g203800 Chlamydomonas reinhardtii HOM05D006666 ORTHO05D008276 5.1e-09 65.1 44 63.6


User provided reference genes

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