Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0312851 Rosa chinensis HOM05D005141 ORTHO05D006250 2.5e-248 861.7 439 100.0
FAN15G0409 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.5e-226 787.7 443 92.3
FAN27G2430 Fragaria x ananassa HOM05D005141 ORTHO05D006250 8.6e-225 783.5 443 91.9
FAN24G3348 Fragaria x ananassa HOM05D005141 ORTHO05D006250 6.1e-223 777.3 443 91.2
FAN20G1096 Fragaria x ananassa HOM05D005141 ORTHO05D006250 4.4e-221 771.2 443 91.4
Prupe.1G467500 Prunus persica HOM05D005141 ORTHO05D006250 5.2e-198 694.5 438 82.0
MD15G1116100 Malus domestica HOM05D005141 ORTHO05D006250 5.6e-184 647.9 454 76.9
MD08G1137500 Malus domestica HOM05D005141 ORTHO05D006250 1.5e-181 639.8 450 77.6
FvH4_2g30050 Fragaria vesca HOM05D005141 ORTHO05D006250 1.7e-164 583.2 337 90.2
CiPaw.07G218200 Carya illinoinensis HOM05D005141 ORTHO05D006250 1.9e-152 543.1 444 66.4
Cfa021484 Carpinus fangiana HOM05D005141 ORTHO05D006250 1.0e-148 530.8 419 68.3
CiPaw.08G014900 Carya illinoinensis HOM05D005141 ORTHO05D006250 2.7e-146 522.7 444 64.4
CANSAT25G3062 Cannabis sativa HOM05D005141 ORTHO05D006250 7.9e-146 521.2 449 64.6
GSVIVG01035797001 Vitis vinifera HOM05D005141 ORTHO05D006250 7.4e-144 514.6 416 66.8
Potri.018G033700 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.2e-140 503.1 409 66.3
Haze_21614 Corylus avellana HOM05D005141 ORTHO05D006250 6.5e-140 501.5 422 66.1
Dinv30204 Davidia involucrata HOM05D005141 ORTHO05D006250 1.2e-138 497.3 443 63.2
QL12p031441 Quercus lobata HOM05D005141 ORTHO05D006250 1.6e-138 496.9 410 66.3
Sabra18G0034600 Salix brachista HOM05D005141 ORTHO05D006250 2.1e-138 496.5 406 65.3
TWI32G0021 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 1.5e-136 490.3 420 63.6
Manes.03G065500 Manihot esculenta HOM05D005141 ORTHO05D006250 2.6e-133 479.6 412 64.3
Sabra06G0193700 Salix brachista HOM05D005141 ORTHO05D006250 2.6e-133 479.6 418 64.4
Manes.16G067800 Manihot esculenta HOM05D005141 ORTHO05D006250 1.0e-132 477.6 414 64.5
Thecc.09G145300 Theobroma cacao HOM05D005141 ORTHO05D006250 3.3e-128 462.6 450 59.8
TWI34G0135 Tripterygium wilfordii HOM05D005141 ORTHO05D006250 5.9e-125 451.8 356 66.6
Ciclev10008356m.g Citrus clementina HOM05D005141 ORTHO05D006250 1.7e-124 450.3 443 56.9
TAR383G0458 Trochodendron aralioides HOM05D005141 ORTHO05D006250 6.5e-124 448.4 445 59.1
Duzib187G0541 Durio zibethinus HOM05D005141 ORTHO05D006250 8.0e-122 441.4 443 58.2
Atru.chr7.2334 Acer truncatum HOM05D005141 ORTHO05D006250 2.3e-121 439.9 417 60.9
Nn2g11855 Nelumbo nucifera HOM05D005141 ORTHO05D006250 3.0e-121 439.5 450 56.7
Ca_15703_v3 Cicer arietinum L. HOM05D005141 ORTHO05D006250 2.6e-120 436.4 441 57.4
Glyma.06G072700 Glycine max HOM05D005141 ORTHO05D006250 7.5e-120 434.9 434 57.4
TAR626G1320 Trochodendron aralioides HOM05D005141 ORTHO05D006250 7.5e-120 434.9 445 58.0
Phvul.009G097300 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 1.3e-119 434.1 434 56.7
Duzib150G1154 Durio zibethinus HOM05D005141 ORTHO05D006250 4.8e-119 432.2 480 54.0
Duzib168G0094 Durio zibethinus HOM05D005141 ORTHO05D006250 8.3e-119 431.4 444 56.8
Glyma.04G071400 Glycine max HOM05D005141 ORTHO05D006250 1.4e-118 430.6 435 56.6
Hma1.2p1_0175F.1_g077130 Hydrangea macrophylla HOM05D005141 ORTHO05D006250 5.3e-118 428.7 442 57.7
Eucgr.C01809 Eucalyptus grandis HOM05D005141 ORTHO05D006250 1.2e-117 427.6 413 56.4
Gorai.009G011200 Gossypium raimondii HOM05D005141 ORTHO05D006250 2.0e-117 426.8 448 56.7
VMungo1309G3073 Vigna mungo HOM05D005141 ORTHO05D006250 2.0e-117 426.8 434 56.5
TPR.G34685 Trifolium pratense HOM05D005141 ORTHO05D006250 2.7e-117 426.4 407 58.7
Lj1g0018494 Lotus japonicus HOM05D005141 ORTHO05D006250 3.5e-117 426.0 437 55.8
Medtr3g107950 Medicago truncatula HOM05D005141 ORTHO05D006250 7.7e-117 424.9 402 59.2
ClCG08G012940 Citrullus lanatus HOM05D005141 ORTHO05D006250 6.8e-113 411.8 420 59.0
TAR636G0300 Trochodendron aralioides HOM05D005141 ORTHO05D006250 3.4e-112 409.5 457 55.8
Potri.006G247500 Populus trichocarpa HOM05D005141 ORTHO05D006250 2.2e-111 406.8 307 70.0
Lalb_Chr23g0268881 Lupinus albus HOM05D005141 ORTHO05D006250 9.1e-110 401.4 412 56.3
PGSC0003DMG400026089 Solanum tuberosum HOM05D005141 ORTHO05D006250 2.7e-109 399.8 415 56.4
Lj7A714G44 Lonicera japonica HOM05D005141 ORTHO05D006250 7.7e-109 398.3 353 62.0
Solyc06g065650.3 Solanum lycopersicum HOM05D005141 ORTHO05D006250 7.7e-109 398.3 414 55.6
CAN.G199.28 Capsicum annuum HOM05D005141 ORTHO05D006250 3.3e-107 392.9 408 55.9
Sopen06g024010 Solanum pennellii HOM05D005141 ORTHO05D006250 9.5e-107 391.3 429 53.6
Sed0000645 Sechium edule HOM05D005141 ORTHO05D006250 1.4e-105 387.5 444 53.6
vmacro11124 Vaccinium macrocarpon HOM05D005141 ORTHO05D006250 3.0e-105 386.3 482 49.4
Actinidia13429 Actinidia chinensis HOM05D005141 ORTHO05D006250 6.3e-103 378.6 420 53.1
arahy.Tifrunner.gnm1.ann1.WUI646 Arachis hypogaea HOM05D005141 ORTHO05D006250 1.2e-101 374.4 381 55.6
Gohir.A05G010100 Gossypium hirsutum HOM05D005141 ORTHO05D006250 1.3e-100 370.9 447 51.7
MELO3C011217.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.6e-98 364.0 443 51.2
Gohir.D05G010800 Gossypium hirsutum HOM05D005141 ORTHO05D006250 6.1e-98 362.1 447 51.2
Nitab4.5_0005873g0030 Nicotiana tabacum HOM05D005141 ORTHO05D006250 1.8e-97 360.5 436 50.2
Lalb_Chr08g0243831 Lupinus albus HOM05D005141 ORTHO05D006250 6.8e-97 358.6 419 52.3
Nitab4.5_0011669g0010 Nicotiana tabacum HOM05D005141 ORTHO05D006250 2.6e-96 356.7 436 49.3
Cc08_g08010 Coffea canephora HOM05D005141 ORTHO05D006250 3.4e-96 356.3 412 51.5
arahy.Tifrunner.gnm1.ann1.29TRSQ Arachis hypogaea HOM05D005141 ORTHO05D006250 4.4e-96 355.9 419 50.6
PSO782G1260 Papaver somniferum HOM05D005141 ORTHO05D006250 9.8e-96 354.8 442 50.5
DCAR_022871 Daucus carota HOM05D005141 ORTHO05D006250 6.4e-95 352.1 442 50.2
Nn8g39307 Nelumbo nucifera HOM05D005141 ORTHO05D006250 4.1e-94 349.4 338 58.3
Peaxi162Scf00545g00034 Petunia axillaris HOM05D005141 ORTHO05D006250 7.0e-94 348.6 460 48.0
Cpa.g.sc91.20 Carica papaya HOM05D005141 ORTHO05D006250 7.8e-93 345.1 336 59.2
COL.COLO4_24046 Corchorus olitorius HOM05D005141 ORTHO05D006250 2.3e-92 343.6 288 62.8
Rhsim02G0188600 Rhododendron simsii HOM05D005141 ORTHO05D006250 1.1e-91 341.3 309 59.9
MBI04_g39529_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 4.3e-91 339.3 416 50.5
ECA233G0036 Erigeron canadensis HOM05D005141 ORTHO05D006250 1.5e-88 330.9 409 52.1
PGR031G2456 Punica granatum HOM05D005141 ORTHO05D006250 1.7e-84 317.4 448 46.0
SalBow4G0713 Salvia bowleyana HOM05D005141 ORTHO05D006250 5.6e-83 312.4 372 50.8
Actinidia13280 Actinidia chinensis HOM05D005141 ORTHO05D006250 1.6e-82 310.8 290 59.7
PSO063G0687 Papaver somniferum HOM05D005141 ORTHO05D006250 2.8e-82 310.1 441 47.2
Dinv11587 Davidia involucrata HOM05D005141 ORTHO05D006250 4.7e-82 309.3 262 64.5
MSTRG.25868 Avicennia marina HOM05D005141 ORTHO05D006250 1.2e-80 304.7 364 51.1
HanXRQChr02g0050641 Helianthus annuus HOM05D005141 ORTHO05D006250 7.6e-80 302.0 344 55.8
Sed0008448 Sechium edule HOM05D005141 ORTHO05D006250 8.3e-79 298.5 411 48.2
ClCG05G017130 Citrullus lanatus HOM05D005141 ORTHO05D006250 1.1e-78 298.1 427 46.8
MBI01_g37337_MAGBIO Magnolia biondii HOM05D005141 ORTHO05D006250 1.6e-77 294.3 315 54.6
Psat0s1782g0240 Pisum sativum HOM05D005141 ORTHO05D006250 2.7e-77 293.5 333 51.4
Lsat_1_v5_gn_1_43100 Lactuca sativa HOM05D005141 ORTHO05D006250 9.6e-75 285.0 405 48.9
MELO3C003675.2 Cucumis melo HOM05D005141 ORTHO05D006250 1.8e-73 280.8 419 45.3
Oeu032487.3 Olea europaea HOM05D005141 ORTHO05D006250 1.8e-73 280.8 327 51.4
Oeu014659.3 Olea europaea HOM05D005141 ORTHO05D006250 2.4e-73 280.4 390 45.6
Migut.A00282 Erythranthe guttata HOM05D005141 ORTHO05D006250 4.0e-73 279.6 384 49.0
CsaV3_3G046630 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.4e-72 276.6 338 50.6
Phvul.001G055100 Phaseolus vulgaris HOM05D005141 ORTHO05D006250 2.2e-71 273.9 346 48.6
EL10Ac2g02550 Beta vulgaris HOM05D005141 ORTHO05D006250 2.1e-69 267.3 359 47.9
Lsat_1_v5_gn_6_22941 Lactuca sativa HOM05D005141 ORTHO05D006250 7.3e-67 258.8 363 48.5
AUR62024850 Chenopodium quinoa HOM05D005141 ORTHO05D006250 5.3e-65 252.7 325 48.0
CsaV3_2G031660 Cucumis sativus L. HOM05D005141 ORTHO05D006250 3.4e-64 250.0 268 56.0
HanXRQChr13g0402161 Helianthus annuus HOM05D005141 ORTHO05D006250 4.4e-64 249.6 283 51.9
ATR0083G007 Amborella trichopoda HOM05D005141 ORTHO05D006250 3.3e-59 233.4 412 40.5
SGA_v2.0_scaffold27G11478 Striga asiatica HOM05D005141 ORTHO05D006250 4.5e-56 223.0 392 43.1
THA.LOC104803820 Tarenaya hassleriana HOM05D005141 ORTHO05D006250 2.4e-54 217.2 425 39.5
Thhalv10025562m.g Eutrema salsugineum HOM05D005141 ORTHO05D006250 3.0e-52 210.3 443 38.1
Sp7g30350 Schrenkiella parvula HOM05D005141 ORTHO05D006250 3.3e-51 206.8 437 38.2
Carub.0007s0798 Capsella rubella HOM05D005141 ORTHO05D006250 9.6e-51 205.3 430 38.1
AL7G19190 Arabidopsis lyrata HOM05D005141 ORTHO05D006250 8.1e-50 202.2 403 38.7
BraA08t33764Z Brassica rapa HOM05D005141 ORTHO05D006250 1.1e-49 201.8 437 37.1
AT4G32570 Arabidopsis thaliana HOM05D005141 ORTHO05D006250 3.4e-48 196.8 440 37.0
A08p18120 Brassica napus HOM05D005141 ORTHO05D006250 3.4e-48 196.8 435 36.8
C03p87260 Brassica napus HOM05D005141 ORTHO05D006250 1.0e-47 195.3 438 37.0
BolC3t21027H Brassica oleracea HOM05D005141 ORTHO05D006250 1.3e-47 194.9 438 37.0
Aqoxy7G01897 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.8e-47 193.4 305 43.9
BcaC01g01013 Brassica carinata HOM05D005141 ORTHO05D006250 1.1e-46 191.8 434 36.9
BcaB03g12752 Brassica carinata HOM05D005141 ORTHO05D006250 4.2e-46 189.9 429 37.3
C01p06380 Brassica napus HOM05D005141 ORTHO05D006250 8.7e-44 182.2 433 36.3
BraA01t00550Z Brassica rapa HOM05D005141 ORTHO05D006250 1.5e-43 181.4 431 35.7
A01p05810 Brassica napus HOM05D005141 ORTHO05D006250 3.3e-43 180.3 429 35.7
BolC1t00634H Brassica oleracea HOM05D005141 ORTHO05D006250 3.7e-42 176.8 429 35.7
Aa31LG4G11720 Aethionema arabicum HOM05D005141 ORTHO05D006250 5.3e-41 172.9 436 33.9
BcaC09g52048 Brassica carinata HOM05D005141 ORTHO05D006250 9.0e-41 172.2 428 36.7
SHI18604 Sapria himalayana HOM05D005141 ORTHO05D006250 4.5e-40 169.9 296 38.5
Glyma.17G205200 Glycine max HOM05D005141 ORTHO05D006250 7.6e-40 169.1 196 49.5
HPP92_009098 Vanilla planifolia HOM05D005141 ORTHO05D006250 1.6e-37 161.4 336 38.4
unitig_37.g12225 Utricularia gibba HOM05D005141 ORTHO05D006250 1.5e-32 144.8 307 35.5
CSS0000568 Camellia sinensis var. sinensis HOM05D005141 ORTHO05D006250 1.0e-28 132.1 124 58.1
unitig_46.g18533 Utricularia gibba HOM05D005141 ORTHO05D006250 3.0e-28 130.6 241 40.7
SEGI_18535 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 2.5e-27 127.5 302 34.1
Ah.10g025860 Amaranthus hybridus HOM05D005141 ORTHO05D006250 1.5e-24 118.2 205 40.0
AagrBONN_evm.TU.Sc2ySwM_117.408 Anthoceros agrestis HOM05D005141 ORTHO05D006250 1.4e-22 111.7 467 31.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 6.1e-21 106.3 133 49.6
Pp3c19_8700 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.0e-20 105.5 304 31.2
Pp3c22_12420 Physcomitrium patens HOM05D005141 ORTHO05D006250 1.1e-19 102.1 400 30.8
Cpa.g.sc91.24 Carica papaya HOM05D005141 ORTHO05D006250 4.8e-18 96.7 94 54.3
Mapoly0079s0053 Marchantia polymorpha HOM05D005141 ORTHO05D006250 6.3e-18 96.3 391 31.2
SMO143G0273 Selaginella moellendorffii HOM05D005141 ORTHO05D006250 6.3e-18 96.3 147 41.5
BcaC08g44885 Brassica carinata HOM05D005141 ORTHO05D006250 1.4e-17 95.1 175 37.1
C06p25010 Brassica napus HOM05D000698 ORTHO05D006250 2.4e-17 94.4 191 36.1
A06p26660 Brassica napus HOM05D005141 ORTHO05D006250 1.6e-16 91.7 175 36.6
Haze_10527 Corylus avellana HOM05D005141 ORTHO05D006250 9.4e-14 82.4 79 50.6
C07p35200 Brassica napus HOM05D005141 ORTHO05D006250 2.7e-08 64.3 63 52.4
BolC7t44052H Brassica oleracea HOM05D005141 ORTHO05D006250 2.7e-08 64.3 63 52.4
BolC9t58511H Brassica oleracea HOM05D005141 ORTHO05D006250 4.5e-08 63.5 60 53.3
Dinv07115 Davidia involucrata HOM05D005141 ORTHO05D030953 5.9e-08 63.2 90 50.0
Lj7C714T1 Lonicera japonica HOM05D005141 ORTHO05D030953 3.2e-06 57.4 70 52.9
SEGI_09816 Sequoiadendron giganteum HOM05D005141 ORTHO05D006250 5.5e-06 56.6 159 30.8


User provided reference genes

Program Settings