Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 2.8e-126 455.3 228 100.0
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 9.3e-106 387.1 248 80.2
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.1e-95 353.6 254 72.8
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.3e-95 352.1 254 72.4
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 1.5e-84 316.6 243 65.0
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 4.5e-84 315.1 249 65.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.4e-83 310.8 252 67.1
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.4e-83 310.8 252 67.1
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 3.2e-82 308.9 254 65.0
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.1e-81 306.2 245 64.5
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 8.7e-80 300.8 242 62.8
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 2.5e-79 299.3 240 63.8
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 3.3e-79 298.9 248 61.7
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 3.3e-79 298.9 242 61.6
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 5.7e-79 298.1 255 60.0
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.8e-78 295.8 240 61.7
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 2.8e-78 295.8 240 61.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 2.8e-78 295.8 240 63.3
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 4.8e-78 295.0 242 62.4
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 6.3e-78 294.7 263 58.6
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 8.2e-78 294.3 240 62.9
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 8.2e-78 294.3 237 62.4
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.1e-77 293.9 237 63.3
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 2.4e-77 292.7 239 62.8
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.1e-77 292.4 251 61.4
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 4.1e-77 292.0 228 66.7
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 5.3e-77 291.6 242 63.6
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.0e-76 289.7 239 59.8
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 4.5e-76 288.5 226 65.5
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.3e-75 287.0 240 60.0
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 6.5e-75 284.6 234 61.5
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.1e-74 283.9 247 57.5
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 3.2e-74 282.3 271 56.5
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 4.2e-74 282.0 256 59.0
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 5.5e-74 281.6 176 83.5
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 1.2e-73 280.4 237 61.2
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 4.6e-73 278.5 243 58.8
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 6.1e-73 278.1 240 62.5
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 8.8e-72 274.2 229 61.6
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 1.1e-71 273.9 244 60.2
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 2.0e-71 273.1 247 60.7
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 3.3e-71 272.3 242 56.6
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 3.3e-71 272.3 248 57.3
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 3.3e-71 272.3 242 61.2
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 5.7e-71 271.6 247 57.9
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 9.7e-71 270.8 241 60.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.3e-70 270.4 247 56.7
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.3e-70 270.4 260 53.1
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 2.2e-70 269.6 246 56.9
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 2.8e-70 269.2 255 56.5
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 4.8e-70 268.5 246 56.9
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.2e-70 267.7 207 68.6
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-69 267.3 246 56.5
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.4e-69 266.9 246 56.5
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.4e-69 266.9 244 58.6
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.1e-69 265.8 241 56.4
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 4.1e-69 265.4 251 55.0
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 2.0e-68 263.1 272 52.2
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 2.6e-68 262.7 272 52.9
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 3.4e-68 262.3 211 62.1
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 5.9e-68 261.5 251 59.4
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 7.7e-68 261.2 250 52.0
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.0e-67 260.8 244 57.4
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 1.0e-67 260.8 246 54.9
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.0e-67 260.8 239 57.7
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.3e-67 260.4 239 57.7
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 2.2e-67 259.6 241 55.6
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 9.4e-66 254.2 242 53.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.2e-65 253.8 209 61.2
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 4.7e-65 251.9 254 55.1
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 6.1e-65 251.5 233 54.9
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.4e-64 250.4 251 52.2
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.3e-64 249.6 264 54.2
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 5.1e-64 248.4 228 57.5
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 7.4e-63 244.6 236 57.6
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.3e-62 243.8 253 53.0
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 2.4e-61 239.6 249 53.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 2.4e-61 239.6 239 54.4
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 2.6e-60 236.1 251 51.0
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 5.0e-59 231.9 221 54.8
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 4.7e-57 225.3 210 54.3
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 3.0e-56 222.6 247 45.7
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 5.7e-55 218.4 247 50.2
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 1.7e-54 216.9 217 55.3
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 3.1e-53 212.6 240 45.4
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 1.7e-51 206.8 196 55.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.2e-51 206.5 255 46.7
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.9e-50 203.4 191 56.0
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 4.2e-50 202.2 197 54.3
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 3.0e-48 196.1 229 49.3
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.0e-48 196.1 380 36.1
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 5.7e-47 191.8 239 49.0
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 2.2e-46 189.9 217 48.8
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 5.4e-45 185.3 216 44.9
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.6e-41 172.6 193 50.8
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.8e-40 170.2 153 58.8
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 6.8e-40 168.3 150 56.0
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 1.7e-38 163.7 135 60.7
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 3.7e-38 162.5 114 71.9
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 8.3e-38 161.4 124 65.3
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.1e-34 151.0 129 58.1
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.9e-34 150.2 124 59.7
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 3.3e-34 149.4 127 58.3
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 7.2e-34 148.3 129 57.4
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 7.2e-34 148.3 129 57.4
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 1.6e-33 147.1 210 40.5
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.6e-33 147.1 123 56.9
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 3.6e-33 146.0 127 56.7
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.0e-32 144.4 125 56.8
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 1.8e-32 143.7 95 72.6
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 2.0e-31 140.2 119 58.0
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 1.4e-29 134.0 100 63.0
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 6.6e-27 125.2 90 65.6
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 7.3e-26 121.7 211 35.1
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 2.1e-25 120.2 125 51.2
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 8.9e-24 114.8 91 61.5
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.6e-23 113.2 278 32.4
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 3.7e-22 109.4 88 61.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.2e-21 106.3 76 59.2
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.7e-20 103.2 102 53.9
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 4.6e-20 102.4 119 50.4
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 7.8e-20 101.7 103 49.5
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.5e-18 97.4 288 27.1
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 3.3e-18 96.3 87 57.5
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 4.3e-18 95.9 92 48.9
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.1e-16 91.3 93 50.5
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 3.0e-11 73.2 70 47.1
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.5e-10 70.9 72 48.6
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 4.3e-10 69.3 43 72.1
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.3e-08 63.5 39 69.2
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 9.9e-07 58.2 34 79.4
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 6.4e-06 55.5 107 32.7


User provided reference genes

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