Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0311721 Rosa chinensis HOM05D003371 ORTHO05D003729 8.9e-26 119.4 56 100.0
FvH4_3g38390 Fragaria vesca HOM05D003371 ORTHO05D003729 4.0e-10 67.4 43 76.7
Peaxi162Scf00540g00515 Petunia axillaris HOM05D003371 ORTHO05D003729 4.0e-10 67.4 45 68.9
Aqoxy2G00928 Aquilegia oxysepala HOM05D003371 ORTHO05D003729 5.2e-10 67.0 44 68.2
FAN11G3530 Fragaria x ananassa HOM05D003371 ORTHO05D003729 5.2e-10 67.0 41 78.0
FAN16G0130 Fragaria x ananassa HOM05D003371 ORTHO05D003729 5.2e-10 67.0 41 78.0
FAN21G4041 Fragaria x ananassa HOM05D003371 ORTHO05D003729 5.2e-10 67.0 41 78.0
FAN25G1160 Fragaria x ananassa HOM05D003371 ORTHO05D003729 5.2e-10 67.0 41 78.0
RcHm_v2.0_Chr5g0069011 Rosa chinensis HOM05D003371 ORTHO05D003729 5.2e-10 67.0 41 78.0
MD10G1151000 Malus domestica HOM05D003371 ORTHO05D003729 6.8e-10 66.6 41 73.2
HPP92_019872 Vanilla planifolia HOM05D003371 ORTHO05D003729 1.5e-09 65.5 43 69.8
Hma1.2p1_2245F.1_g317970 Hydrangea macrophylla HOM05D003371 ORTHO05D003729 3.4e-09 64.3 41 70.7
Manes.10G014400 Manihot esculenta HOM05D003371 ORTHO05D003729 4.4e-09 63.9 41 68.3
Os01g0856800 Oryza sativa ssp. japonica HOM05D003371 ORTHO05D003729 4.4e-09 63.9 43 69.8
Potri.009G044500 Populus trichocarpa HOM05D003371 ORTHO05D003729 4.4e-09 63.9 41 68.3
Sabra09G0032100 Salix brachista HOM05D003371 ORTHO05D003729 4.4e-09 63.9 41 68.3
Zm00001eb147460 Zea mays HOM05D003371 ORTHO05D003729 4.4e-09 63.9 39 74.4
MD03G1072100 Malus domestica HOM05D000001 ORTHO05D000003 5.8e-09 63.5 41 70.7
MD11G1076900 Malus domestica HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
MD11G1077100 Malus domestica HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
Manes.01G162600 Manihot esculenta HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
Nn2g13676 Nelumbo nucifera HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
TWI31G0057 Tripterygium wilfordii HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
TAR369G0639 Trochodendron aralioides HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
TAR623G1505 Trochodendron aralioides HOM05D003371 ORTHO05D003729 5.8e-09 63.5 41 70.7
CANSAT56G3040 Cannabis sativa HOM05D003371 ORTHO05D003729 7.5e-09 63.2 39 71.8
Gohir.A05G304200 Gossypium hirsutum HOM05D003371 ORTHO05D003729 7.5e-09 63.2 39 69.2
Ah.16g103380 Amaranthus hybridus HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
EL10Ac2g04811 Beta vulgaris HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
AUR62012232 Chenopodium quinoa HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
AUR62022864 Chenopodium quinoa HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
Ca_05951_v3 Cicer arietinum L. HOM05D003371 ORTHO05D003729 9.8e-09 62.8 41 63.4
Ciclev10029527m.g Citrus clementina HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
Nn2g11439 Nelumbo nucifera HOM05D003371 ORTHO05D003729 9.8e-09 62.8 49 59.2
Prupe.6G059100 Prunus persica HOM05D003371 ORTHO05D003729 9.8e-09 62.8 41 70.7
TPR.G35122 Trifolium pratense HOM05D003371 ORTHO05D003729 9.8e-09 62.8 41 63.4
VMungo0540G1366 Vigna mungo HOM05D003371 ORTHO05D003729 9.8e-09 62.8 39 69.2
COL.COLO4_19131 Corchorus olitorius HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Duzib170G0792 Durio zibethinus HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Glyma.14G060200 Glycine max HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 66.7
Gohir.A13G224900 Gossypium hirsutum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Gohir.D13G229900 Gossypium hirsutum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Gorai.013G260600 Gossypium raimondii HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Nitab4.5_0000010g0260 Nicotiana tabacum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
Nitab4.5_0011052g0020 Nicotiana tabacum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
Os05g0447000 Oryza sativa ssp. japonica HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
Psat2g034360 Pisum sativum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 41 61.0
Solyc06g076890.1 Solanum lycopersicum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
Sopen06g033280 Solanum pennellii HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
PGSC0003DMG400030353 Solanum tuberosum HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 71.8
Thecc.09G303600 Theobroma cacao HOM05D003371 ORTHO05D003729 1.3e-08 62.4 39 69.2
Cpa.g.sc19.194 Carica papaya HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Cfa001345 Carpinus fangiana HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
CiPaw.01G297300 Carya illinoinensis HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Ciclev10033015m.g Citrus clementina HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Haze_17210 Corylus avellana HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Dinv17977 Davidia involucrata HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Duzib114G0114 Durio zibethinus HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Lsat_1_v5_gn_8_12501 Lactuca sativa HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Phvul.006G132900 Phaseolus vulgaris HOM05D003371 ORTHO05D003729 1.7e-08 62.0 39 66.7
Potri.008G066700 Populus trichocarpa HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
PGR142G3776 Punica granatum HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
QL08p062972 Quercus lobata HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
THA.LOC104823146 Tarenaya hassleriana HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
Thecc.10G021500 Theobroma cacao HOM05D003371 ORTHO05D003729 1.7e-08 62.0 41 65.9
BolC3t15467H Brassica oleracea HOM05D000100 ORTHO05D003729 2.9e-08 61.2 42 66.7
Cc01_g14090 Coffea canephora HOM05D003371 ORTHO05D003729 2.9e-08 61.2 41 61.0
FAN01G1381 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.9e-08 61.2 39 69.2
FAN03G0659 Fragaria x ananassa HOM05D000021 ORTHO05D000010 2.9e-08 61.2 39 69.2
FAN10G1504 Fragaria x ananassa HOM05D000021 ORTHO05D003729 2.9e-08 61.2 39 69.2
Lj8C12T8 Lonicera japonica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 41 63.4
Lj8C69T2 Lonicera japonica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 41 63.4
MD01G1149900 Malus domestica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
MD07G1216300 Malus domestica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
Prupe.2G060800 Prunus persica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
Prupe.2G248200 Prunus persica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
Prupe.3G164400 Prunus persica HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
RcHm_v2.0_Chr1g0369831 Rosa chinensis HOM05D003371 ORTHO05D003729 2.9e-08 61.2 39 69.2
CAN.G394.120 Capsicum annuum HOM05D003371 ORTHO05D003729 3.7e-08 60.8 37 75.7
Cc02_g06700 Coffea canephora HOM05D003371 ORTHO05D003729 3.7e-08 60.8 39 66.7
Glyma.02G256300 Glycine max HOM05D003371 ORTHO05D003729 3.7e-08 60.8 39 66.7
LjContig00357g0015600 Lotus japonicus HOM05D003371 ORTHO05D003729 3.7e-08 60.8 41 61.0
Manes.02G120600 Manihot esculenta HOM05D003371 ORTHO05D003729 3.7e-08 60.8 41 65.9
SalBow6G5569 Salvia bowleyana HOM05D003371 ORTHO05D003729 3.7e-08 60.8 39 66.7
SEGI_01218 Sequoiadendron giganteum HOM05D003371 ORTHO05D003729 3.7e-08 60.8 41 65.9
Sc10g0002270 Simmondsia chinensis HOM05D003371 ORTHO05D003729 3.7e-08 60.8 39 66.7
VMungo0540G0466 Vigna mungo HOM05D003371 ORTHO05D003729 3.7e-08 60.8 39 66.7
Aa31LG5G6780 Aethionema arabicum HOM05D003371 ORTHO05D003729 4.9e-08 60.5 42 64.3
AL4G24480 Arabidopsis lyrata HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
AT2G29700 Arabidopsis thaliana HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
arahy.Tifrunner.gnm1.ann1.VYGJ8S Arachis hypogaea HOM05D003371 ORTHO05D003729 4.9e-08 60.5 38 68.4
AUR62001663 Chenopodium quinoa HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
AUR62020116 Chenopodium quinoa HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
DCAR_011803 Daucus carota HOM05D003371 ORTHO05D003729 4.9e-08 60.5 39 66.7
Thhalv10017382m.g Eutrema salsugineum HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
Lsat_1_v5_gn_7_35761 Lactuca sativa HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 63.4
Potri.010G190500 Populus trichocarpa HOM05D003371 ORTHO05D003729 4.9e-08 60.5 38 68.4
PGR102G0824 Punica granatum HOM05D003371 ORTHO05D003729 4.9e-08 60.5 38 68.4
Sp4g12420 Schrenkiella parvula HOM05D003371 ORTHO05D003729 4.9e-08 60.5 41 65.9
AL6G15610 Arabidopsis lyrata HOM05D003371 ORTHO05D003729 6.4e-08 60.1 39 66.7
AT5G05710 Arabidopsis thaliana HOM05D003371 ORTHO05D003729 6.4e-08 60.1 39 66.7
BcaC01g05005 Brassica carinata HOM05D003371 ORTHO05D003729 6.4e-08 60.1 41 65.9
A03p26140 Brassica napus HOM05D000100 ORTHO05D003729 6.4e-08 60.1 41 65.9
C03p31200 Brassica napus HOM05D000100 ORTHO05D003729 6.4e-08 60.1 41 65.9
BraA03t11829Z Brassica rapa HOM05D000100 ORTHO05D003729 6.4e-08 60.1 41 65.9
Gohir.A07G103800 Gossypium hirsutum HOM05D003371 ORTHO05D003729 6.4e-08 60.1 39 64.1
Lj1P953T37 Lonicera japonica HOM05D003371 ORTHO05D003729 6.4e-08 60.1 38 68.4
THA.LOC104826291 Tarenaya hassleriana HOM05D003371 ORTHO05D003729 6.4e-08 60.1 41 63.4
Actinidia16077 Actinidia chinensis HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 61.0
MSTRG.8948 Avicennia marina HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 64.1
BcaB01g03144 Brassica carinata HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 63.4
CSS0017433 Camellia sinensis var. sinensis HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 63.4
MELO3C025860.2 Cucumis melo HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 65.9
CsaV3_6G016290 Cucumis sativus L. HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 65.9
Migut.F00673 Erythranthe guttata HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 64.1
Oeu025645.1 Olea europaea HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 64.1
Oeu028600.1 Olea europaea HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 64.1
Potri.001G250400 Populus trichocarpa HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 65.9
Rhsim09G0176500 Rhododendron simsii HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 66.7
SalBow6G2046 Salvia bowleyana HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 66.7
Sed0019834 Sechium edule HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 65.9
SGA_v2.0_scaffold78G25463 Striga asiatica HOM05D003371 ORTHO05D003729 8.3e-08 59.7 39 64.1
THA.LOC104800730 Tarenaya hassleriana HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 63.4
THA.LOC104816554 Tarenaya hassleriana HOM05D003371 ORTHO05D003729 8.3e-08 59.7 41 65.9
Aa31LG11G6740 Aethionema arabicum HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 64.1
Carub.0004s1080 Capsella rubella HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 66.7
CARHR123040 Cardamine hirsuta HOM05D003371 ORTHO05D003729 1.1e-07 59.3 41 63.4
Cpa.g.sc112.38 Carica papaya HOM05D003371 ORTHO05D003729 1.1e-07 59.3 41 65.9
Duzib150G0551 Durio zibethinus HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 66.7
HanXRQChr08g0222161 Helianthus annuus HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 66.7
MBI14_g28270_MAGBIO Magnolia biondii HOM05D003371 ORTHO05D003729 1.1e-07 59.3 37 73.0
Nitab4.5_0000802g0060 Nicotiana tabacum HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 64.1
Nitab4.5_0008493g0020 Nicotiana tabacum HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 64.1
PSO339G5404 Papaver somniferum HOM05D003371 ORTHO05D003729 1.1e-07 59.3 37 73.0
PSO801G0606 Papaver somniferum HOM05D003371 ORTHO05D003729 1.1e-07 59.3 37 73.0
QL01p037786 Quercus lobata HOM05D003371 ORTHO05D003729 1.1e-07 59.3 37 73.0
Sabra08G0048900 Salix brachista HOM05D003371 ORTHO05D003729 1.1e-07 59.3 39 64.1
ClCG02G019620 Citrullus lanatus HOM05D003371 ORTHO05D003729 1.4e-07 58.9 41 65.9
Thhalv10015014m.g Eutrema salsugineum HOM05D003371 ORTHO05D003729 1.4e-07 58.9 41 61.0
HanXRQChr12g0369321 Helianthus annuus HOM05D003371 ORTHO05D003729 1.4e-07 58.9 41 63.4
Lalb_Chr20g0114941 Lupinus albus HOM05D003371 ORTHO05D003729 1.4e-07 58.9 41 58.5
Ah.08g221040 Amaranthus hybridus HOM05D003371 ORTHO05D003729 1.9e-07 58.5 39 66.7
CiPaw.13G079300 Carya illinoinensis HOM05D003371 ORTHO05D003729 1.9e-07 58.5 37 70.3
Medtr5g082470 Medicago truncatula HOM05D003371 ORTHO05D003729 1.9e-07 58.5 39 61.5
Pp3c25_5310 Physcomitrium patens HOM05D003371 ORTHO05D003729 1.9e-07 58.5 41 61.0
TWI09G0053 Tripterygium wilfordii HOM05D003371 ORTHO05D003729 1.9e-07 58.5 41 63.4
TWI53G1617 Tripterygium wilfordii HOM05D003371 ORTHO05D003729 1.9e-07 58.5 41 63.4
arahy.Tifrunner.gnm1.ann1.AI3QN3 Arachis hypogaea HOM05D003371 ORTHO05D003729 2.4e-07 58.2 43 58.1
arahy.Tifrunner.gnm1.ann1.YJ1RAA Arachis hypogaea HOM05D003371 ORTHO05D003729 2.4e-07 58.2 43 58.1
Gohir.D07G107600 Gossypium hirsutum HOM05D003371 ORTHO05D003729 2.4e-07 58.2 47 55.3
BcaC02g11055 Brassica carinata HOM05D003371 ORTHO05D003729 3.2e-07 57.8 41 58.5
C04p21100 Brassica napus HOM05D000100 ORTHO05D003729 3.2e-07 57.8 41 58.5
BolC4t23636H Brassica oleracea HOM05D003371 ORTHO05D003729 3.2e-07 57.8 41 58.5
COL.COLO4_25619 Corchorus olitorius HOM05D003371 ORTHO05D003729 3.2e-07 57.8 41 63.4
Lalb_Chr15g0082821 Lupinus albus HOM05D003371 ORTHO05D003729 3.2e-07 57.8 41 58.5
Lalb_Chr17g0346711 Lupinus albus HOM05D003371 ORTHO05D003729 3.2e-07 57.8 41 58.5
Sp6g37180 Schrenkiella parvula HOM05D003371 ORTHO05D003729 3.2e-07 57.8 39 61.5
Cfa011673 Carpinus fangiana HOM05D003371 ORTHO05D003729 4.1e-07 57.4 37 67.6
Haze_24286 Corylus avellana HOM05D003371 ORTHO05D003729 4.1e-07 57.4 37 67.6
Gorai.001G115600 Gossypium raimondii HOM05D003371 ORTHO05D003729 4.1e-07 57.4 39 61.5
Mapoly0105s0029 Marchantia polymorpha HOM05D003371 ORTHO05D003729 4.1e-07 57.4 39 61.5
Pp3c16_7820 Physcomitrium patens HOM05D003371 ORTHO05D003729 5.4e-07 57.0 39 59.0
vmacro22162 Vaccinium macrocarpon HOM05D003371 ORTHO05D003729 5.4e-07 57.0 39 61.5
A05p15690 Brassica napus HOM05D003371 ORTHO05D003729 7.0e-07 56.6 39 59.0
BraA05t20482Z Brassica rapa HOM05D003371 ORTHO05D003729 7.0e-07 56.6 39 59.0
ECA238G1505 Erigeron canadensis HOM05D003371 ORTHO05D003729 7.0e-07 56.6 41 61.0
PGSC0003DMG400027183 Solanum tuberosum HOM05D003371 ORTHO05D003729 7.0e-07 56.6 39 61.5
Pp3c5_16490 Physcomitrium patens HOM05D003371 ORTHO05D003729 9.2e-07 56.2 39 59.0
MSTRG.8322 Avicennia marina HOM05D003371 ORTHO05D003729 1.2e-06 55.8 39 59.0
Lsat_1_v5_gn_3_12600 Lactuca sativa HOM05D003371 ORTHO05D003729 1.2e-06 55.8 39 61.5
Rhsim13G0071000 Rhododendron simsii HOM05D003371 ORTHO05D003729 1.2e-06 55.8 39 59.0
vmacro02977 Vaccinium macrocarpon HOM05D003371 ORTHO05D003729 1.2e-06 55.8 39 59.0
vmacro10054 Vaccinium macrocarpon HOM05D003371 ORTHO05D003729 1.2e-06 55.8 39 59.0
CANSAT54G2848 Cannabis sativa HOM05D003371 ORTHO05D003729 2.1e-06 55.1 38 63.2
Solyc05g052720.1 Solanum lycopersicum HOM05D003371 ORTHO05D003729 2.1e-06 55.1 39 61.5
Sopen05g031240 Solanum pennellii HOM05D003371 ORTHO05D003729 2.1e-06 55.1 39 61.5
EL10Ac7g16151 Beta vulgaris HOM05D003371 ORTHO05D003729 2.7e-06 54.7 39 64.1
Nitab4.5_0002100g0010 Nicotiana tabacum HOM05D003371 ORTHO05D003729 2.7e-06 54.7 39 59.0
HanXRQChr17g0555421 Helianthus annuus HOM05D003371 ORTHO05D003729 3.5e-06 54.3 39 59.0
CBR_g3755 Chara braunii HOM05D003371 ORTHO05D003729 6.0e-06 53.5 38 55.3
CARHR207560 Cardamine hirsuta HOM05D003371 ORTHO05D003729 7.8e-06 53.1 37 59.5
SMO356G0170 Selaginella moellendorffii HOM05D003371 ORTHO05D003729 7.8e-06 53.1 37 59.5


User provided reference genes

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