Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 1.7e-183 646.0 340 100.0
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 2.0e-176 622.5 340 95.6
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 4.7e-170 601.3 345 91.9
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 3.3e-168 595.1 340 92.4
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 6.5e-164 580.9 341 89.7
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.6e-162 576.2 341 89.1
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.7e-156 556.2 303 95.7
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 6.5e-156 554.3 303 95.4
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.9e-155 552.7 344 82.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 4.2e-155 551.6 345 82.3
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 7.2e-155 550.8 347 84.1
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.2e-154 550.1 345 82.0
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 8.8e-153 543.9 345 80.9
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 1.5e-152 543.1 346 81.8
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 80.9
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 82.0
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 82.0
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 4.4e-152 541.6 345 80.3
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 6.3e-151 537.7 345 81.4
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.4e-150 536.6 345 81.7
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 1.8e-150 536.2 344 81.1
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 1.8e-150 536.2 346 80.3
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 5.4e-150 534.6 345 79.7
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.0e-150 534.3 345 79.7
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 1.2e-149 533.5 346 80.1
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.2e-149 533.5 345 80.6
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.7e-149 530.8 345 79.4
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.0e-148 530.4 344 79.4
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.7e-148 529.6 345 79.4
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 2.3e-148 529.3 345 80.3
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.9e-148 528.9 345 78.8
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.9e-148 528.9 345 78.8
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 3.8e-148 528.5 345 79.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 3.8e-148 528.5 344 80.2
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 3.8e-148 528.5 340 80.0
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 3.8e-148 528.5 343 79.3
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 5.0e-148 528.1 343 77.3
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 6.6e-148 527.7 343 77.3
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 6.6e-148 527.7 345 80.0
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 1.5e-147 526.6 343 76.7
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 1.9e-147 526.2 343 77.0
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 5.5e-147 524.6 343 77.8
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 1.6e-146 523.1 345 79.1
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 2.1e-146 522.7 342 80.1
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 3.6e-146 521.9 343 76.7
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 4.7e-146 521.5 345 77.7
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 4.7e-146 521.5 348 80.2
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 6.1e-146 521.2 346 78.3
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 8.0e-146 520.8 345 78.0
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.0e-145 520.4 346 78.3
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.0e-145 520.4 344 79.4
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.0e-145 520.4 345 79.4
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.8e-145 519.6 345 78.0
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.0e-145 518.8 343 79.6
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 4.0e-145 518.5 340 79.4
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 5.2e-145 518.1 345 78.3
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 5.2e-145 518.1 344 78.2
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 6.8e-145 517.7 343 76.1
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 6.8e-145 517.7 343 76.1
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 6.8e-145 517.7 355 74.1
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 8.9e-145 517.3 343 76.1
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 2.0e-144 516.2 343 75.8
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 2.0e-144 516.2 343 75.8
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 2.0e-144 516.2 343 75.8
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 3.4e-144 515.4 343 75.5
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 4.4e-144 515.0 343 75.2
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.4e-144 515.0 344 77.3
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 7.5e-144 514.2 343 78.1
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 7.5e-144 514.2 350 76.6
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 1.3e-143 513.5 345 77.7
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 1.3e-143 513.5 345 77.7
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 1.7e-143 513.1 343 75.2
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 2.2e-143 512.7 344 78.8
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 3.7e-143 511.9 343 77.3
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 1.1e-142 510.4 355 73.8
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.1e-142 510.4 344 77.3
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 7.0e-142 507.7 350 76.6
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.7e-141 505.8 332 79.2
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 4.5e-141 505.0 388 70.9
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 7.8e-141 504.2 342 77.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 2.3e-140 502.7 357 74.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 1.5e-139 500.0 336 75.6
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 1.9e-139 499.6 345 75.9
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 6.1e-138 494.6 343 77.0
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 8.0e-138 494.2 367 72.5
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 3.4e-136 488.8 324 78.4
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 1.3e-135 486.9 345 75.4
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.3e-135 486.9 308 81.5
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 2.9e-135 485.7 340 75.9
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 6.4e-135 484.6 345 72.2
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 2.0e-133 479.6 336 73.8
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 2.7e-133 479.2 413 64.4
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 6.6e-132 474.6 272 87.9
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 1.8e-129 466.5 308 77.9
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 2.9e-127 459.1 345 73.3
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 6.4e-127 458.0 272 84.6
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 4.1e-126 455.3 336 71.7
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 9.2e-126 454.1 336 68.8
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.0e-124 450.7 344 70.3
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 8.1e-122 441.0 295 80.7
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.7e-119 433.3 343 68.2
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 2.4e-118 429.5 394 63.7
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.1e-118 427.9 340 67.4
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.1e-115 420.6 340 66.2
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 1.4e-113 413.7 418 57.2
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.0e-112 409.8 328 68.6
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.7e-108 396.7 292 72.9
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.4e-102 377.1 222 84.2
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 3.2e-102 375.9 224 83.9
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 3.5e-101 372.5 343 62.7
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.5e-99 367.1 345 61.7
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.8e-98 362.8 380 54.2
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 8.4e-95 351.3 249 75.5
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 8.1e-90 334.7 204 83.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 1.7e-87 327.0 435 49.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 1.8e-81 307.0 324 50.9
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 2.4e-81 306.6 169 92.9
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 4.5e-80 302.4 344 53.8
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 6.7e-76 288.5 249 60.6
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 2.2e-74 283.5 249 62.7
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 1.3e-71 274.2 200 68.0
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 3.7e-66 256.1 251 58.2
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 3.1e-65 253.1 271 47.2
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 2.8e-58 229.9 152 80.3
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 1.3e-55 221.1 144 79.9
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 4.2e-54 216.1 238 55.5
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 4.2e-54 216.1 158 67.7
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 8.8e-52 208.4 164 65.9
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 6.5e-47 192.2 184 60.3
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 1.9e-46 190.7 349 36.1
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.6e-45 187.6 131 75.6
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 1.5e-43 181.0 110 82.7
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 8.5e-39 165.2 341 33.1
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 5.5e-38 162.5 323 31.9
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 7.2e-38 162.2 132 71.2
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.2e-37 161.4 316 35.1
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.7e-31 141.0 113 67.3
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 9.8e-27 125.2 74 85.1
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 3.5e-24 116.7 95 64.2
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 2.3e-23 114.0 106 62.3
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 4.0e-20 103.2 95 63.2
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 5.2e-20 102.8 73 68.5


User provided reference genes

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