Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.4e-62 243.0 145 100.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.5e-40 169.1 125 79.2
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 3.3e-40 168.7 125 80.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 7.3e-40 167.5 125 80.8
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.8e-39 165.6 125 79.2
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.3e-36 156.8 125 76.0
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 4.5e-29 131.7 131 66.4
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 6.9e-22 107.8 129 59.7
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 9.0e-22 107.5 125 63.2
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 9.0e-22 107.5 129 50.4
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 1.2e-21 107.1 125 50.4
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.0e-21 106.3 125 53.6
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 2.6e-21 105.9 125 56.0
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.6e-21 105.9 125 51.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.6e-21 105.9 125 51.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 5.8e-21 104.8 125 47.2
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.7e-20 103.2 128 50.8
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 4.9e-20 101.7 124 57.3
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 4.9e-20 101.7 126 62.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 4.9e-20 101.7 125 52.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 4.9e-20 101.7 125 52.0
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 6.5e-20 101.3 125 56.0
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 6.5e-20 101.3 125 53.6
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 1.1e-19 100.5 125 56.0
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.4e-19 100.1 132 54.5
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 1.9e-19 99.8 125 53.6
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-19 99.8 125 51.2
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 1.9e-19 99.8 124 50.8
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 2.5e-19 99.4 132 52.3
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 2.5e-19 99.4 129 50.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 3.2e-19 99.0 132 62.1
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 3.2e-19 99.0 124 52.4
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 3.2e-19 99.0 126 57.9
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 4.2e-19 98.6 125 58.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 7.1e-19 97.8 132 43.9
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 7.1e-19 97.8 125 48.8
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 9.3e-19 97.4 132 49.2
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 9.3e-19 97.4 126 47.6
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 9.3e-19 97.4 129 51.9
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 9.3e-19 97.4 127 53.5
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 1.2e-18 97.1 127 54.3
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 1.6e-18 96.7 127 58.3
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 1.6e-18 96.7 135 51.9
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 1.6e-18 96.7 135 54.1
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 1.6e-18 96.7 135 51.9
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 2.7e-18 95.9 126 50.8
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 6.0e-18 94.7 125 48.0
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.0e-17 94.0 125 44.8
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.0e-17 94.0 125 44.8
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 1.3e-17 93.6 125 51.2
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 1.3e-17 93.6 130 49.2
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 2.3e-17 92.8 125 52.8
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.3e-17 92.8 128 54.7
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 3.0e-17 92.4 127 57.5
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 3.0e-17 92.4 126 57.9
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 3.0e-17 92.4 132 61.4
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 3.0e-17 92.4 123 49.6
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 5.1e-17 91.7 127 54.3
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 5.1e-17 91.7 125 44.0
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 6.7e-17 91.3 129 48.8
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 6.7e-17 91.3 136 49.3
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 6.7e-17 91.3 134 53.7
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 8.7e-17 90.9 124 51.6
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 1.1e-16 90.5 130 51.5
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 1.5e-16 90.1 125 52.8
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-16 90.1 126 50.0
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.5e-16 90.1 140 48.6
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 1.9e-16 89.7 125 44.0
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 2.5e-16 89.4 131 51.1
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.5e-16 89.4 125 55.2
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 2.5e-16 89.4 125 55.2
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.5e-16 89.4 126 47.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 3.3e-16 89.0 133 48.9
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 4.3e-16 88.6 128 49.2
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 4.3e-16 88.6 125 42.4
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 4.3e-16 88.6 128 51.6
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 5.7e-16 88.2 127 47.2
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 5.7e-16 88.2 125 48.8
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 7.4e-16 87.8 125 40.8
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 9.7e-16 87.4 125 45.6
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 9.7e-16 87.4 131 46.6
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 1.3e-15 87.0 125 48.0
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 1.3e-15 87.0 124 49.2
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 1.6e-15 86.7 134 50.7
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.6e-15 86.7 125 53.6
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 1.6e-15 86.7 125 50.4
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.8e-15 85.9 125 49.6
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 4.8e-15 85.1 125 48.0
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 4.8e-15 85.1 131 45.8
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.3e-15 84.7 124 53.2
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 8.2e-15 84.3 125 49.6
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 1.1e-14 84.0 134 49.3
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 1.4e-14 83.6 130 51.5
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 1.8e-14 83.2 144 45.1
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 2.4e-14 82.8 121 44.6
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 3.1e-14 82.4 132 45.5
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 4.1e-14 82.0 125 40.0
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 4.1e-14 82.0 124 40.3
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 5.3e-14 81.6 125 51.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 9.0e-14 80.9 126 42.1
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 9.0e-14 80.9 122 47.5
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 1.2e-13 80.5 130 49.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 1.5e-13 80.1 105 52.4
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 5.9e-13 78.2 141 48.2
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 7.7e-13 77.8 122 53.3
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 1.0e-12 77.4 122 47.5
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 2.2e-12 76.3 131 38.2
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.1e-11 73.9 124 46.0
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 2.5e-11 72.8 139 36.0
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 2.5e-11 72.8 52 65.4
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.5e-11 72.8 127 52.8
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 3.2e-11 72.4 127 41.7
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 4.2e-11 72.0 131 43.5
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 9.4e-11 70.9 121 43.8
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 9.4e-11 70.9 168 33.9
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.6e-10 70.1 52 65.4
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.7e-10 69.3 127 44.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 3.6e-10 68.9 46 67.4
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 4.6e-10 68.6 102 48.0
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 4.6e-10 68.6 124 41.9
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 6.1e-10 68.2 135 41.5
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 7.9e-10 67.8 141 48.2
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 7.9e-10 67.8 47 63.8
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 1.4e-09 67.0 111 45.0
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 3.0e-09 65.9 128 33.6
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 1.5e-08 63.5 44 59.1
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.0e-08 63.2 46 56.5
vmacro00163 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 6.9e-06 54.7 125 36.8


User provided reference genes

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