Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309981 Rosa chinensis HOM05D006874 ORTHO05D008334 7.9e-200 700.3 366 100.0
FAN15G0895 Fragaria x ananassa HOM05D006874 ORTHO05D008334 4.1e-148 528.5 363 79.6
FAN27G0759 Fragaria x ananassa HOM05D006874 ORTHO05D008334 1.4e-143 513.5 363 77.1
FvH4_2g32690 Fragaria vesca HOM05D006874 ORTHO05D008334 2.9e-141 505.8 364 77.7
FAN20G1691 Fragaria x ananassa HOM05D006874 ORTHO05D008334 4.6e-139 498.4 348 78.2
Prupe.1G419500 Prunus persica HOM05D006874 ORTHO05D008334 1.8e-79 300.4 369 53.7
FAN24G0724 Fragaria x ananassa HOM05D006874 ORTHO05D008334 2.9e-69 266.5 190 76.3
MD08G1078600 Malus domestica HOM05D006874 ORTHO05D008334 9.4e-68 261.5 395 48.6
Cfa013741 Carpinus fangiana HOM05D006874 ORTHO05D008334 4.0e-58 229.6 386 43.5
Manes.18G049200 Manihot esculenta HOM05D006874 ORTHO05D008334 1.2e-54 218.0 387 39.8
Manes.05G183400 Manihot esculenta HOM05D006874 ORTHO05D008334 9.5e-52 208.4 378 41.3
Duzib093G1642 Durio zibethinus HOM05D006874 ORTHO05D008334 3.6e-51 206.5 370 42.2
TAR628G0654 Trochodendron aralioides HOM05D006874 ORTHO05D008334 4.7e-51 206.1 387 40.3
QL12p038579 Quercus lobata HOM05D006874 ORTHO05D008334 6.1e-51 205.7 399 39.8
Duzib116G0206 Durio zibethinus HOM05D006874 ORTHO05D008334 1.8e-50 204.1 366 41.5
Haze_22393 Corylus avellana HOM05D006874 ORTHO05D008334 4.4e-49 199.5 381 39.9
Haze_22401 Corylus avellana HOM05D006874 ORTHO05D008334 4.4e-49 199.5 381 39.9
Thecc.08G084900 Theobroma cacao HOM05D006874 ORTHO05D008334 5.9e-46 189.1 367 38.7
CiPaw.07G172200 Carya illinoinensis HOM05D006874 ORTHO05D008334 1.1e-44 184.9 359 37.9
Potri.014G013200 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.0e-42 176.4 390 36.9
Ciclev10016010m.g Citrus clementina HOM05D006874 ORTHO05D008334 2.0e-41 174.1 365 37.3
Eucgr.F02227 Eucalyptus grandis HOM05D006874 ORTHO05D008334 3.4e-41 173.3 387 37.0
Potri.002G115600 Populus trichocarpa HOM05D006874 ORTHO05D008334 3.4e-41 173.3 385 36.1
MD15G1065400 Malus domestica HOM05D006874 ORTHO05D008334 5.8e-41 172.6 219 51.1
Sabra14G0008000 Salix brachista HOM05D006874 ORTHO05D008334 5.8e-41 172.6 383 36.0
CANSAT25G0531 Cannabis sativa HOM05D006874 ORTHO05D008334 2.9e-40 170.2 379 35.1
Nn6g34522 Nelumbo nucifera HOM05D006874 ORTHO05D008334 3.2e-39 166.8 392 35.7
Actinidia19297 Actinidia chinensis HOM05D006874 ORTHO05D008334 4.6e-38 162.9 378 34.1
Nn5g30659 Nelumbo nucifera HOM05D006874 ORTHO05D008334 1.0e-37 161.8 400 34.8
Sabra02G0091300 Salix brachista HOM05D006874 ORTHO05D008334 1.3e-37 161.4 350 35.4
Dinv39206 Davidia involucrata HOM05D006874 ORTHO05D008334 3.0e-37 160.2 377 37.1
Oeu053642.1 Olea europaea HOM05D006874 ORTHO05D008334 8.6e-37 158.7 359 36.5
Actinidia10219 Actinidia chinensis HOM05D006874 ORTHO05D008334 2.5e-36 157.1 359 35.9
TWI56G0226 Tripterygium wilfordii HOM05D006874 ORTHO05D008334 4.7e-35 152.9 377 35.8
Aqoxy6G02484 Aquilegia oxysepala HOM05D006874 ORTHO05D008334 6.2e-35 152.5 403 35.5
Gohir.D05G215200 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.4e-34 151.4 361 36.3
Atru.chr13.867 Acer truncatum HOM05D006874 ORTHO05D008334 3.1e-34 150.2 311 37.6
Gorai.009G221900 Gossypium raimondii HOM05D006874 ORTHO05D008334 3.4e-33 146.7 368 35.1
PSO541G5864 Papaver somniferum HOM05D006874 ORTHO05D008334 2.2e-32 144.1 397 33.5
Gohir.A05G211900 Gossypium hirsutum HOM05D006874 ORTHO05D008334 4.1e-31 139.8 362 35.6
Medtr3g103400 Medicago truncatula HOM05D006874 ORTHO05D008334 5.4e-31 139.4 367 32.7
Hund05278 Selenicereus undatus HOM05D006874 ORTHO05D008334 7.1e-31 139.0 387 32.8
vmacro21419 Vaccinium macrocarpon HOM05D006874 ORTHO05D008334 7.1e-31 139.0 374 33.2
Nitab4.5_0001426g0040 Nicotiana tabacum HOM05D006874 ORTHO05D008334 6.0e-30 136.0 351 34.8
MSTRG.24387 Avicennia marina HOM05D006874 ORTHO05D008334 7.8e-30 135.6 363 35.0
Gohir.A06G025400 Gossypium hirsutum HOM05D006874 ORTHO05D008334 7.8e-30 135.6 361 33.8
Gorai.010G027100 Gossypium raimondii HOM05D006874 ORTHO05D008334 1.0e-29 135.2 361 33.8
Rhsim06G0064400 Rhododendron simsii HOM05D006874 ORTHO05D008334 1.3e-29 134.8 374 34.0
Gohir.D06G022500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 1.7e-29 134.4 361 33.5
Lalb_Chr23g0267621 Lupinus albus HOM05D006874 ORTHO05D008334 3.0e-29 133.7 377 32.1
Glyma.17G233100 Glycine max HOM05D006874 ORTHO05D008334 1.1e-28 131.7 368 31.0
PGR031G0049 Punica granatum HOM05D006874 ORTHO05D008334 1.1e-28 131.7 376 32.2
Cpa.g.sc524.2 Carica papaya HOM05D006874 ORTHO05D008334 1.9e-28 131.0 370 31.1
Nitab4.5_0002796g0010 Nicotiana tabacum HOM05D006874 ORTHO05D008334 2.5e-28 130.6 354 36.2
PSO675G5853 Papaver somniferum HOM05D006874 ORTHO05D008334 3.3e-28 130.2 404 32.4
Cc10_g07600 Coffea canephora HOM05D006874 ORTHO05D008334 9.5e-28 128.6 365 31.5
Dinv09539 Davidia involucrata HOM05D006874 ORTHO05D008334 2.8e-27 127.1 354 33.1
Ca_15889_v3 Cicer arietinum L. HOM05D006874 ORTHO05D008334 8.1e-27 125.6 364 31.3
Lj1g0014879 Lotus japonicus HOM05D006874 ORTHO05D008334 2.6e-25 120.6 364 33.5
Glyma.14G089075 Glycine max HOM05D006874 ORTHO05D008334 7.6e-25 119.0 368 29.6
MBI16_g45151_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 7.6e-25 119.0 379 34.0
PGSC0003DMG400004918 Solanum tuberosum HOM05D006874 ORTHO05D008334 7.6e-25 119.0 359 31.8
AUR62037457 Chenopodium quinoa HOM05D006874 ORTHO05D008334 9.9e-25 118.6 382 30.9
ATR0739G189 Amborella trichopoda HOM05D006874 ORTHO05D008334 2.2e-24 117.5 364 34.3
AUR62035010 Chenopodium quinoa HOM05D006874 ORTHO05D008334 2.2e-24 117.5 385 31.2
Solyc04g077535.1 Solanum lycopersicum HOM05D006874 ORTHO05D008334 1.4e-23 114.8 365 33.4
Sed0017147 Sechium edule HOM05D006874 ORTHO05D008334 2.4e-23 114.0 364 32.7
ClCG05G026570 Citrullus lanatus HOM05D006874 ORTHO05D008334 5.4e-23 112.8 349 32.7
Phvul.001G029700 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 2.1e-22 110.9 364 29.1
Glyma.06G048600 Glycine max HOM05D006874 ORTHO05D008334 4.6e-22 109.8 398 32.2
Psat0s1031g0080 Pisum sativum HOM05D006874 ORTHO05D008334 4.6e-22 109.8 363 30.3
MELO3C016836.2 Cucumis melo HOM05D006874 ORTHO05D008334 7.8e-22 109.0 360 32.5
Cfa004701 Carpinus fangiana HOM05D006874 ORTHO05D008334 1.7e-21 107.8 374 30.7
SalBow7G3254 Salvia bowleyana HOM05D006874 ORTHO05D008334 1.7e-21 107.8 354 30.8
Psat5g037000 Pisum sativum HOM05D006874 ORTHO05D008334 3.9e-21 106.7 365 29.3
CsaV3_4G035240 Cucumis sativus L. HOM05D006874 ORTHO05D008334 5.1e-21 106.3 359 32.0
Sc15g0005390 Simmondsia chinensis HOM05D006874 ORTHO05D008334 8.6e-21 105.5 370 30.5
CSS0036555 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 2.5e-20 104.0 202 35.6
Migut.C00474 Erythranthe guttata HOM05D006874 ORTHO05D008334 1.6e-19 101.3 355 30.7
EL10Ac1g02352 Beta vulgaris HOM05D006874 ORTHO05D008334 4.7e-19 99.8 405 28.9
Potri.001G290000 Populus trichocarpa HOM05D006874 ORTHO05D008334 4.7e-19 99.8 375 30.4
CiPaw.06G164000 Carya illinoinensis HOM05D006874 ORTHO05D008334 3.1e-18 97.1 380 30.0
MBI16_g41242_MAGBIO Magnolia biondii HOM05D006874 ORTHO05D008334 6.9e-18 95.9 148 43.9
TAR376G0413 Trochodendron aralioides HOM05D006874 ORTHO05D008334 7.6e-17 92.4 169 41.4
Hma1.2p1_1170F.1_g263450 Hydrangea macrophylla HOM05D006874 ORTHO05D008334 6.4e-16 89.4 113 43.4
TPR.G13116 Trifolium pratense HOM05D006874 ORTHO05D008334 6.4e-16 89.4 360 28.1
CSS0007120 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 1.1e-15 88.6 358 28.8
MSTRG.25026 Avicennia marina HOM05D006874 ORTHO05D008334 1.4e-15 88.2 291 30.2
TAR625G1551 Trochodendron aralioides HOM05D006874 ORTHO05D008334 1.4e-15 88.2 140 37.9
Sabra16G0181500 Salix brachista HOM05D006874 ORTHO05D008334 1.9e-15 87.8 386 28.8
VMungo1309G0435 Vigna mungo HOM05D006874 ORTHO05D008334 1.9e-15 87.8 394 28.4
CSS0047478 Camellia sinensis var. sinensis HOM05D006874 ORTHO05D008334 3.2e-15 87.0 358 28.2
Haze_10303 Corylus avellana HOM05D006874 ORTHO05D008334 3.2e-15 87.0 356 28.9
Gorai.002G136000 Gossypium raimondii HOM05D006874 ORTHO05D008334 5.4e-15 86.3 355 30.4
Gohir.A01G123500 Gossypium hirsutum HOM05D006874 ORTHO05D008334 9.3e-15 85.5 346 30.3
SGA_v2.0_scaffold14G07085 Striga asiatica HOM05D000285 ORTHO05D000241 2.1e-14 84.3 363 26.7
Lj5g0027457 Lotus japonicus HOM05D006874 ORTHO05D008334 2.7e-14 84.0 369 31.2
Medtr1g017530 Medicago truncatula HOM05D006874 ORTHO05D008334 2.7e-14 84.0 365 27.7
Actinidia00356 Actinidia chinensis HOM05D006874 ORTHO05D008334 6.0e-14 82.8 145 36.6
Phvul.009G073900 Phaseolus vulgaris HOM05D006874 ORTHO05D008334 6.0e-14 82.8 399 28.1
VMungo0647G0698 Vigna mungo HOM05D006874 ORTHO05D008334 7.8e-14 82.4 376 27.7
COL.COLO4_28465 Corchorus olitorius HOM05D006874 ORTHO05D008334 5.1e-13 79.7 145 42.8
Dinv16069 Davidia involucrata HOM05D006874 ORTHO05D008334 6.6e-13 79.3 360 28.1
QL11p029345 Quercus lobata HOM05D006874 ORTHO05D008334 6.6e-13 79.3 359 27.3
Potri.009G085500 Populus trichocarpa HOM05D006874 ORTHO05D008334 8.7e-13 79.0 374 29.7
DCAR_020062 Daucus carota HOM05D006874 ORTHO05D008334 1.1e-12 78.6 350 28.3
TAR625G0319 Trochodendron aralioides HOM05D006874 ORTHO05D008334 5.6e-12 76.3 91 53.8
Psat6g017400 Pisum sativum HOM05D006874 ORTHO05D008334 3.6e-11 73.6 354 27.1
Sopen04g031160 Solanum pennellii HOM05D006874 ORTHO05D008334 4.8e-11 73.2 283 30.0
Manes.07G056800 Manihot esculenta HOM05D006874 ORTHO05D008334 3.1e-10 70.5 354 26.3
COL.COLO4_32486 Corchorus olitorius HOM05D016697 ORTHO05D018163 4.0e-10 70.1 369 24.7
Ciclev10030239m.g Citrus clementina HOM05D006874 ORTHO05D008334 5.3e-10 69.7 106 33.0
Cpa.g.sc91.58 Carica papaya HOM05D016697 ORTHO05D018163 7.6e-09 65.9 386 24.9
Thecc.02G119800 Theobroma cacao HOM05D016697 ORTHO05D018163 2.2e-08 64.3 373 26.3
arahy.Tifrunner.gnm1.ann1.0IC8QA Arachis hypogaea HOM05D006874 ORTHO05D008334 3.8e-08 63.5 258 27.5
Gohir.D01G111300 Gossypium hirsutum HOM05D006874 ORTHO05D008334 2.7e-06 57.4 356 27.0


User provided reference genes

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