Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
RcHm_v2.0_Chr6g0309741 Rosa chinensis HOM05D006323 ORTHO05D007827 0.0e+00 1101.7 536 100.0
FAN24G0652 Fragaria x ananassa HOM05D006323 ORTHO05D007827 7.7e-244 847.0 541 78.7
FAN20G1244 Fragaria x ananassa HOM05D006323 ORTHO05D007827 3.8e-243 844.7 553 77.9
FvH4_2g32960 Fragaria vesca HOM05D006323 ORTHO05D007827 1.5e-239 832.8 459 88.2
FAN27G3326 Fragaria x ananassa HOM05D006323 ORTHO05D007827 2.4e-237 825.5 459 87.4
FAN15G2783 Fragaria x ananassa HOM05D006323 ORTHO05D007827 4.5e-236 821.2 461 86.8
Prupe.1G422100 Prunus persica HOM05D006323 ORTHO05D007827 2.4e-213 745.7 472 77.8
Dinv44950 Davidia involucrata HOM05D006323 ORTHO05D007827 1.3e-166 590.5 464 64.2
CiPaw.07G174200 Carya illinoinensis HOM05D006323 ORTHO05D007827 1.1e-160 570.9 468 60.9
QL12p038177 Quercus lobata HOM05D006323 ORTHO05D007827 4.0e-160 568.9 471 62.0
ClCG08G016540 Citrullus lanatus HOM05D006323 ORTHO05D007827 9.3e-157 557.8 462 59.5
Hma1.2p1_0819F.1_g223630 Hydrangea macrophylla HOM05D006323 ORTHO05D007827 2.1e-156 556.6 477 61.2
CANSAT25G0442 Cannabis sativa HOM05D006323 ORTHO05D007827 1.0e-155 554.3 477 60.8
Actinidia38108 Actinidia chinensis HOM05D006323 ORTHO05D007827 5.1e-155 552.0 467 61.0
Haze_22429 Corylus avellana HOM05D006323 ORTHO05D007827 5.1e-155 552.0 466 61.2
CSS0010458 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.5e-154 549.7 470 60.6
Cfa013771 Carpinus fangiana HOM05D006323 ORTHO05D007827 4.3e-154 548.9 466 60.7
MELO3C010800.2 Cucumis melo HOM05D006323 ORTHO05D007827 1.6e-153 547.0 462 58.0
CSS0050369 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 3.7e-153 545.8 468 60.7
CsaV3_2G026070 Cucumis sativus L. HOM05D006323 ORTHO05D007827 3.7e-153 545.8 462 58.2
TAR381G1608 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.3e-150 537.3 481 57.8
TAR381G0342 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.7e-150 537.0 473 58.4
CSS0045238 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 2.1e-148 530.0 461 59.9
CSS0024022 Camellia sinensis var. sinensis HOM05D006323 ORTHO05D007827 1.0e-147 527.7 464 59.1
Nn5g30609 Nelumbo nucifera HOM05D006323 ORTHO05D007827 5.3e-144 515.4 463 58.3
arahy.Tifrunner.gnm1.ann1.JK4I75 Arachis hypogaea HOM05D006323 ORTHO05D007827 6.9e-144 515.0 486 54.9
Duzib093G0619 Durio zibethinus HOM05D006323 ORTHO05D007827 4.5e-143 512.3 466 55.2
Sed0007452 Sechium edule HOM05D006323 ORTHO05D007827 2.2e-142 510.0 460 54.3
Thecc.08G088000 Theobroma cacao HOM05D006323 ORTHO05D007827 5.0e-142 508.8 461 56.4
Manes.18G047100 Manihot esculenta HOM05D006323 ORTHO05D007827 1.8e-139 500.4 463 55.3
vmacro22049 Vaccinium macrocarpon HOM05D006323 ORTHO05D007827 5.1e-139 498.8 470 57.7
Lalb_Chr14g0368151 Lupinus albus HOM05D006323 ORTHO05D007827 8.8e-139 498.0 497 53.5
PSO675G0675 Papaver somniferum HOM05D006323 ORTHO05D007827 3.7e-137 492.7 473 54.3
Gohir.A05G210400 Gossypium hirsutum HOM05D006323 ORTHO05D007827 8.2e-137 491.5 457 56.2
Gorai.009G220400 Gossypium raimondii HOM05D006323 ORTHO05D007827 1.4e-136 490.7 457 56.2
Potri.002G117900 Populus trichocarpa HOM05D006323 ORTHO05D007827 1.4e-136 490.7 465 55.7
Eucgr.F00088 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.8e-136 490.3 456 54.8
PSO541G5960 Papaver somniferum HOM05D006323 ORTHO05D007827 2.4e-136 490.0 471 53.9
HanXRQChr10g0298611 Helianthus annuus HOM05D006323 ORTHO05D007827 3.1e-136 489.6 455 55.2
Gohir.D05G213700 Gossypium hirsutum HOM05D006323 ORTHO05D007827 1.2e-135 487.6 453 56.1
Cpa.g.sc142.31 Carica papaya HOM05D006323 ORTHO05D007827 3.4e-135 486.1 470 53.6
Lj5g0017088 Lotus japonicus HOM05D006323 ORTHO05D007827 4.5e-135 485.7 474 56.1
Nitab4.5_0003725g0070 Nicotiana tabacum HOM05D006323 ORTHO05D007827 5.9e-135 485.3 458 54.1
Nitab4.5_0000497g0170 Nicotiana tabacum HOM05D006323 ORTHO05D007827 7.7e-135 485.0 456 53.7
Cpa.g.sc142.34 Carica papaya HOM05D006323 ORTHO05D007827 1.3e-134 484.2 470 53.6
Aqoxy6G02596 Aquilegia oxysepala HOM05D006323 ORTHO05D007827 1.7e-134 483.8 471 53.5
Medtr1g017940 Medicago truncatula HOM05D006323 ORTHO05D007827 1.7e-134 483.8 481 54.5
TWI56G0563 Tripterygium wilfordii HOM05D006323 ORTHO05D007827 3.8e-134 482.6 459 54.2
Psat6g018000 Pisum sativum HOM05D006323 ORTHO05D007827 6.5e-134 481.9 477 55.6
Ca_13213_v3 Cicer arietinum L. HOM05D006323 ORTHO05D007827 1.9e-133 480.3 471 55.6
Oeu016579.1 Olea europaea HOM05D006323 ORTHO05D007827 3.2e-133 479.6 456 54.4
EL10Ac1g02373 Beta vulgaris HOM05D006323 ORTHO05D007827 1.6e-132 477.2 454 52.9
PGSC0003DMG400010620 Solanum tuberosum HOM05D006323 ORTHO05D007827 1.8e-131 473.8 451 52.3
Sabra02G0092600 Salix brachista HOM05D006323 ORTHO05D007827 3.0e-131 473.0 467 54.0
PGR083G0013 Punica granatum HOM05D006323 ORTHO05D007827 1.1e-130 471.1 466 53.4
TPR.G13155 Trifolium pratense HOM05D006323 ORTHO05D007827 1.1e-130 471.1 477 52.2
Sopen04g031380 Solanum pennellii HOM05D006323 ORTHO05D007827 2.0e-130 470.3 451 51.7
Migut.N02786 Erythranthe guttata HOM05D006323 ORTHO05D007827 3.3e-130 469.5 465 52.0
Rhsim07G0219300 Rhododendron simsii HOM05D006323 ORTHO05D007827 3.7e-129 466.1 473 54.3
Glyma.17G234600 Glycine max HOM05D006323 ORTHO05D007827 4.1e-128 462.6 474 52.5
Phvul.001G028300 Phaseolus vulgaris HOM05D006323 ORTHO05D007827 1.6e-127 460.7 463 52.7
CAN.G724.32 Capsicum annuum HOM05D006323 ORTHO05D007827 4.5e-127 459.1 448 51.8
Lsat_1_v5_gn_1_1301 Lactuca sativa HOM05D006323 ORTHO05D007827 2.9e-126 456.4 460 53.9
Hund05295 Selenicereus undatus HOM05D006323 ORTHO05D007827 5.0e-126 455.7 453 52.1
Ciclev10001174m.g Citrus clementina HOM05D006323 ORTHO05D007827 5.5e-125 452.2 455 54.3
SalBow2G0555 Salvia bowleyana HOM05D006323 ORTHO05D007827 7.2e-125 451.8 461 50.5
Glyma.14G089027 Glycine max HOM05D006323 ORTHO05D007827 1.6e-124 450.7 465 52.7
GSVIVG01009337001 Vitis vinifera HOM05D006323 ORTHO05D007827 2.1e-124 450.3 459 53.6
VMungo0647G1220 Vigna mungo HOM05D006323 ORTHO05D007827 1.0e-123 448.0 463 51.4
THA.LOC104825780 Tarenaya hassleriana HOM05D006323 ORTHO05D007827 4.0e-123 446.0 448 52.0
Atru.chr13.839 Acer truncatum HOM05D006323 ORTHO05D007827 3.7e-121 439.5 457 52.7
SGA_v2.0_scaffold28G11834 Striga asiatica HOM05D006323 ORTHO05D007827 4.1e-120 436.0 457 49.2
arahy.Tifrunner.gnm1.ann1.694GR7 Arachis hypogaea HOM05D006323 ORTHO05D007827 1.1e-117 427.9 439 51.9
CDE04G3275 Ceratophyllum demersum HOM05D006323 ORTHO05D007827 2.1e-116 423.7 462 48.5
Ah.05g167080 Amaranthus hybridus HOM05D006323 ORTHO05D007827 9.8e-114 414.8 457 48.6
HPP92_013407 Vanilla planifolia HOM05D006323 ORTHO05D007827 3.1e-112 409.8 445 48.3
AUR62022472 Chenopodium quinoa HOM05D006323 ORTHO05D007827 4.1e-112 409.5 468 48.1
QL05p065459 Quercus lobata HOM05D006323 ORTHO05D007827 1.2e-111 407.9 315 66.0
Sc26g0004210 Simmondsia chinensis HOM05D006323 ORTHO05D007827 1.8e-107 394.0 414 47.6
Carub.0003s1171 Capsella rubella HOM05D006323 ORTHO05D007827 8.8e-107 391.7 449 48.8
Sp6g10510 Schrenkiella parvula HOM05D006323 ORTHO05D007827 2.2e-105 387.1 450 46.9
Thhalv10028685m.g Eutrema salsugineum HOM05D006323 ORTHO05D007827 3.1e-104 383.3 450 48.0
ATR0739G201 Amborella trichopoda HOM05D006323 ORTHO05D007827 2.7e-103 380.2 491 45.2
AT3G12350 Arabidopsis thaliana HOM05D006323 ORTHO05D007827 8.6e-102 375.2 449 48.8
C03p33680 Brassica napus HOM05D006323 ORTHO05D007827 2.5e-101 373.6 450 46.9
BolC3t15688H Brassica oleracea HOM05D006323 ORTHO05D007827 2.5e-101 373.6 450 46.9
CARHR287100 Cardamine hirsuta HOM05D006323 ORTHO05D007827 9.5e-101 371.7 451 47.0
AL3G24000 Arabidopsis lyrata HOM05D006323 ORTHO05D007827 2.1e-100 370.5 449 48.1
TAR625G0711 Trochodendron aralioides HOM05D006323 ORTHO05D007827 1.4e-99 367.9 443 46.0
BcaC01g04786 Brassica carinata HOM05D006323 ORTHO05D007827 2.6e-98 363.6 450 46.7
Aa31LG5G21510 Aethionema arabicum HOM05D006323 ORTHO05D007827 2.2e-97 360.5 455 45.7
A03p27900 Brassica napus HOM05D006323 ORTHO05D007827 1.4e-96 357.8 452 46.2
BcaB01g02882 Brassica carinata HOM05D006323 ORTHO05D007827 2.7e-95 353.6 450 45.8
BraA03t12002Z Brassica rapa HOM05D006323 ORTHO05D007827 4.6e-95 352.8 452 45.6
CAN.G724.31 Capsicum annuum HOM05D006323 ORTHO05D007827 3.6e-92 343.2 446 40.6
AUR62037416 Chenopodium quinoa HOM05D006323 ORTHO05D007827 1.4e-91 341.3 457 42.5
HPP92_013383 Vanilla planifolia HOM05D006323 ORTHO05D007827 1.3e-89 334.7 362 48.9
BcaC01g04794 Brassica carinata HOM05D006323 ORTHO05D007827 9.2e-88 328.6 446 44.4
Lj4A71T64 Lonicera japonica HOM05D006323 ORTHO05D007827 1.1e-85 321.6 325 54.8
TAR628G0857 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.5e-77 293.9 297 52.5
COL.COLO4_28496 Corchorus olitorius HOM05D006323 ORTHO05D007827 4.1e-72 276.6 243 55.1
ECA247G3150 Erigeron canadensis HOM05D006323 ORTHO05D007827 1.0e-70 271.9 320 47.8
Mapoly0007s0129 Marchantia polymorpha HOM05D006323 ORTHO05D007827 3.9e-70 270.0 493 34.1
Cc10_g05020 Coffea canephora HOM05D006323 ORTHO05D007827 4.2e-64 250.0 283 51.9
SEGI_30290 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 1.2e-63 248.4 338 43.2
unitig_8.g4874 Utricularia gibba HOM05D006323 ORTHO05D007827 3.7e-52 210.3 233 48.9
Pp3c15_12240 Physcomitrium patens HOM05D006323 ORTHO05D007827 1.1e-51 208.8 533 30.6
Os12g0511000 Oryza sativa ssp. japonica HOM05D006323 ORTHO05D007827 3.8e-49 200.3 386 34.7
FvH4_3g44630 Fragaria vesca HOM05D006323 ORTHO05D007827 7.4e-45 186.0 107 80.4
AagrBONN_evm.TU.Sc2ySwM_362.2944 Anthoceros agrestis HOM05D006323 ORTHO05D007827 5.3e-43 179.9 358 33.5
HPP92_013381 Vanilla planifolia HOM05D006323 ORTHO05D007827 2.3e-38 164.5 194 47.4
MD08G1081200 Malus domestica HOM05D006323 ORTHO05D007827 6.7e-38 162.9 119 70.6
TAR623G1714 Trochodendron aralioides HOM05D006323 ORTHO05D007827 3.9e-30 137.1 105 61.0
CBR_g25752 Chara braunii HOM05D006323 ORTHO05D007827 4.8e-28 130.2 440 27.3
Eucgr.L02719 Eucalyptus grandis HOM05D006323 ORTHO05D007827 6.3e-28 129.8 157 45.9
COL.COLO4_28497 Corchorus olitorius HOM05D006323 ORTHO05D007827 1.4e-24 118.6 135 45.2
QL04p027551 Quercus lobata HOM05D006323 ORTHO05D007827 1.6e-23 115.2 94 59.6
Zm00001eb264620 Zea mays HOM05D006323 ORTHO05D007827 1.4e-19 102.1 309 28.2
unitig_8.g4875 Utricularia gibba HOM05D006323 ORTHO05D007827 1.2e-18 99.0 100 48.0
TAR623G1335 Trochodendron aralioides HOM05D006323 ORTHO05D007827 2.6e-18 97.8 66 63.6
Lj1P1160T24 Lonicera japonica HOM05D006323 ORTHO05D007827 5.9e-18 96.7 85 65.9
Lj5P501T7 Lonicera japonica HOM05D006323 ORTHO05D007827 1.3e-17 95.5 82 67.1
SEGI_04434 Sequoiadendron giganteum HOM05D006323 ORTHO05D007827 2.7e-15 87.8 163 35.6
Eucgr.C01112 Eucalyptus grandis HOM05D006323 ORTHO05D007827 1.5e-13 82.0 92 46.7
Oeu037483.1 Olea europaea HOM05D006323 ORTHO05D007827 2.1e-07 61.6 138 36.2
HPP92_006886 Vanilla planifolia HOM05D003519 ORTHO05D004443 1.0e-06 59.3 132 30.3


User provided reference genes

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